A simple parameterisation for retrieving soil moisture from passive microwave data

International audienceMICRO-SWEAT, a physically based soil water and energy balance model coupled with a microwave emission model, was used to investigate the relationship between near surface soil moisture (?0-5) and L-band microwave brightness temperature (TB) under a wide range of conditions. The effects of soil texture, look angle and vegetation on this relationship were parameterised and combined into a simple summary model relating ?0-5 to TB. This model retains much of the physical basis of MICRO-SWEAT but can be used in more data limiting circumstances. It was tested using a variety of truck-based L-band data sets collected between 1980 and 1982. This paper emphasises the need to have an accurate estimate of the vegetation optical depth (a parameter that describes the degree of influence of the vegetation on the microwave emission from the soil surface) in order to retrieve correctly the soil water content. Keywords: passive microwave, soil moisture, remote sensing, vegetation, retrieval algorith

Climate change and cetaceans: concerns and recent developments

At least a quarter of the world's cetaceans were recently confirmed as endangered and the situation may be worse as the status of many others remains unclear. Climate change is affecting the oceans and a number of studies have recently highlighted its potential impact on cetacean species - for example, there are important linkages between sea ice and krill, the primary prey for baleen whales in Antarctica. This paper provides a synthesis of new information available on this theme and considers its implications for the future conservation and management of cetacean populations and species. The more mobile (or otherwise adaptable) cetaceans may be able to respond to climate related changes, although the extent of this adaptability is largely unknown. However, there is broad agreement that certain species and populations are likely to be especially vulnerable to climate related changes, including those with a limited habitat range, or those for which sea ice provides an important habitat for the cetacean population and/or that of their prey. International conservation bodies, such as the Convention for Migratory Species and the International Whaling Commission, are striving to address these issues. The challenges presented by climate change require an innovative, large scale, long term and multinational response from scientists, conservation managers and decision makers. This response that should encompass a precautionary approach, including addressing the detrimental effects of other factors negatively impacting populations and specie

Defect Visualization and Location of Reinforcing Bars and Cables in Concrete Using Active Electromagnetic Induction Imaging

Reinforced concrete is used to build many modern structures such as bridges and buildings. The strength of these structures is dependent upon the integrity of the steel reinforcing embedded in the concrete. Over a period of time the rebars may begin to corrode and crack. The loss of steel due to corrosion or the loss of strength due to cracking may lead to structural failure particularly for prestressed concrete. The work described in this paper is the development of active electromagnetic induction sensors capable of detecting reinforcing bars within concrete and the identification of surface breaking defects on the reinforcing bars

Outbreak of acute hepatitis C following the use of anti-hepatitis C virus--screened intravenous immunoglobulin therapy

BACKGROUND and AIMS: Hepatitis C virus (HCV) infection has been associated with intravenous (IV) immunoglobulin (Ig), and plasma donations used to prepare IV Ig are now screened to prevent transmission. Thirty-six patients from the United Kingdom received infusions from a batch of anti-HCV antibody-screened intravenous Ig (Gammagard; Baxter Healthcare Ltd., Thetford, Norfolk, England) that was associated with reports of acute hepatitis C outbreak in Europe. The aim of this study was to document the epidemiology of this outbreak. METHODS: Forty-six patients from the United Kingdom treated with Gammagard (34 exposed and 12 unexposed to the batch) returned epidemiological questionnaires. RESULTS: Eighty-two percent of the exposed patients (28 of 34) became positive for HCV RNA. Eighteen percent of the patients (6 of 34) who had infusions with this batch tested negative for HCV RNA, but 2 of the patients had abnormal liver function and subsequently seroconverted to anti-HCV antibody positive. Twenty-seven percent of the patients (9 of 34) developed jaundice, and 79% (27 of 34) had abnormal liver transferase levels. Virus isolates (n=21), including an isolate from the implicated batch, were genotype 1a and virtually identical by sequence analysis of the NS5 region, consistent with transmission from a single source. CONCLUSIONS: Hepatitis C infection can be transmitted by anti-HCV-screened IV Ig. Careful documentation of IV Ig batch numbers and regular biochemical monitoring is recommended for all IV Ig recipients

SSE: a nucleotide and amino acid sequence analysis platform

<p>Abstract</p> <p>Background</p> <p>There is an increasing need to develop bioinformatic tools to organise and analyse the rapidly growing amount of nucleotide and amino acid sequence data in organisms ranging from viruses to eukaryotes.</p> <p>Finding</p> <p>A simple sequence editor (SSE) was developed to create an integrated environment where sequences can be aligned, annotated, classified and directly analysed by a number of built-in bioinformatic programs. SSE incorporates a sequence editor for the creation of sequence alignments, a process assisted by integrated CLUSTAL/MUSCLE alignment programs and automated removal of indels. Sequences can be fully annotated and classified into groups and annotated of sequences and sequence groups and access to analytical programs that analyse diversity, recombination and RNA secondary structure. Methods for analysing sequence diversity include measures of divergence and evolutionary distances, identity plots to detect regions of nucleotide or amino acid homology, reconstruction of sequence changes, mono-, di- and higher order nucleotide compositional biases and codon usage.</p> <p>Association Index calculations, GroupScans, Bootscanning and TreeOrder scans perform phylogenetic analyses that reconcile group membership with tree branching orders and provide powerful methods for examining segregation of alleles and detection of recombination events. Phylogeny changes across alignments and scoring of branching order differences between trees using the Robinson-Fould algorithm allow effective visualisation of the sites of recombination events.</p> <p>RNA secondary and tertiary structures play important roles in gene expression and RNA virus replication. For the latter, persistence of infection is additionally associated with pervasive RNA secondary structure throughout viral genomic RNA that modulates interactions with innate cell defences. SSE provides several programs to scan alignments for RNA secondary structure through folding energy thermodynamic calculations and phylogenetic methods (detection of co-variant changes, and structure conservation between divergent sequences). These analyses complement methods based on detection of sequence constraints, such as suppression of synonymous site variability.</p> <p>For each program, results can be plotted in real time during analysis through an integrated graphics package, providing publication quality graphs. Results can be also directed to tabulated datafiles for import into spreadsheet or database programs for further analysis.</p> <p>Conclusions</p> <p>SSE combines sequence editor functions with analytical tools in a comprehensive and user-friendly package that assists considerably in bioinformatic and evolution research.</p

Magnetopolaron interactions in n-type indium phosphide

Broadband far-infrared absorption spectroscopy is used to investigate n-type indium phosphide in magnetic fields of up to 30 T. The large energy range 2–14 Ry and the large magnetic field range 03 employed permit the observation of a rich variety of magnetopolaron interactions. We report on the magnetopolaron effect for bound states in InP, beginning with the coupling of the 2p+ state with the 1s+LO phonon state. We further observe the magnetopolaron effect associated with the metastable state 210. In addition we report i) the re-emergence of the 210 impurity state transition beyond the LO phonon manifold, ii) the possible coupling of an impurity transition with the 1s+2LO phonon state, and iii) both low- and high-energy one-phonon transitions of impressive richness and detail

The International Whaling Commission—Beyond Whaling

Since its establishment in 1946 as the international body intended to manage whaling, the International Whaling Commission (IWC) has expanded its areas of interest to ensure the wider conservation of whales. Several key conservation topics have been taken forward under its auspices including climate change, chemical and noise pollution, marine debris and whale watching. Work on each of these topics at the IWC has grown substantially since the 1990s and remains ongoing. Important developments were the establishment of the Standing Working Group on Environmental Concerns in 1996 and the IWC’s Conservation Committee in 2003. Trying to address this diverse set of issues is obviously a challenge, but will be necessary if the long term conservation of cetaceans is to be achieved. Through research, workshops, resolutions and collaboration with other organizations, the IWC has advanced both the understanding of the various issues and the means to manage them with increasing effectiveness. The IWC is likely to remain on the forefront of continuing efforts to address these, and other, conservation concerns and ensure the continued viability of cetacean populations around the globe