The Impact of User Effects on the Performance of Dual Receive Antenna Diversity Systems in Flat Rayleigh Fading Channels

In this paper we study the impact of user effects on the performance of receive antenna diversity systems in flat Rayleigh fading channels. Three diversity combining techniques are compared: maximal ratio combining (MRC), equal gain combining (EGC), and selection combining (SC). User effects are considered in two scenarios: 1) body loss (the reduction of effective antenna gain due to user effects) on a single antenna, and 2) equal body loss on both antennas. The system performance is assessed in terms of mean SNR, link reliability, bit error rate of BPSK, diversity order and ergodic capacity. Our results show that body loss on a single antenna has limited (bounded) impact on system performance. In comparison, body loss on both antennas has unlimited (unbounded) impact and can severely degrade system performance. Our results also show that with increasing body loss on a single antenna the performance of EGC drops faster than that of MRC and SC. When body loss on a single antenna is larger than a certain level, EGC is not a “sub-optimal” method anymore and has worse performance than SC

Distribution and conservation of Oncilla (Leopardus tigrinus) of Yungas, Argentina

En la Argentina y las Yungas, el Tirica es el felino con rango de distribución más restringido y probablemente localmente raro. En este trabajo se presenta un mapa de prioridades de conservación para el Tirica (Leopardus tigrinus) que se desarrolló en base a un mapa de distribución potencial y un mapa de uso de la tierra. Para al mapa de distribución se desarrolló un modelo de distribución de la especie usando el programa MaxEnt y 64 puntos de presencia actual de la Argentina (Yungas y Bosque Atlántico). Se midió el rendimiento general del mapa con el AUC o área bajo la curva ROC, que fue de 0.996; lo que indica un buen rendimiento. Se superpuso este mapa con un mapa de uso de la tierra humano para excluir áreas no aptas para la especie. El mapa resultante indica que ya se ha perdido casi la mitad (48%) del hábitat potencial para la especie, en particular en el borde oriental de su distribución y en el sur donde probablemente la especie nunca estuvo presente. Dos aras son importantes para la conectividad del hábitat y por la alta probabilidad de presencia y por lo tanto, para la conservación de Tirica. Se espera que este mapa sea de utilidad para conservacionistas y tomadores de decisiones.In Argentina and Yungas, Oncilla is the felid species with the smallest distribution range and probably locally rare. Based on the potential distribution map and human land use we present a map indicating important areas for Oncilla conservation. Therefore we developed a potential distribution map for Oncilla (Leopardus tigrinus) using MaxEnt and 64 existing presence points of Argentina (Yungas and Atlantic Forest). We measured the general performance of the map using the AUC or area under the Roc curve, which was 0.996, indicating a model with a good general performance. We superimposed this map with a map of human land use to exclude areas not suitable for the species. The resulting map indicates that already almost half (48%) of potential habitat for the species is lost, particularly in the eastern limit of its distribution and in the south, where the species probably was never present. Two areas are important for habitat connectivity or high presence probability and therefore, conservation of Oncilla. This map is hopefully useful for conservation actions and decision makers.Fil: Cuyckens, Griet An Erica. Universidad Nacional de Jujuy. Facultad de Ciencias Agrarias. Centro de Estudios Ambientales Territoriales y Sociales; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Perovic, P. G.. Administracion de Parques Nacionales; Argentin

Living on the edge: regional distribution and retracting range of the jaguar (Panthera onca)

Vivir al límite: distribución regional y superficie ocupada por el jaguar en retroceso (Panthera onca) Para conservar la biodiversidad, es necesario entender cómo se distribuyen las especies y qué variables ambientales determinan dicha distribución. Los cambios inducidos por el hombre en la ocupación del suelo y la pérdida de hábitat ponen en peligro a numerosas especies de todo el mundo, especialmente a grandes carnívoros. Diferenciar la influencia del clima y la de los usos del suelo en la distribución de jaguar (Panthera onca) es importante para su conservación. Esta especie, que tradicionalmente se distribuía desde los Estados Unidos hasta el sur de Argentina, ha visto reducida su distribución a escala regional y local. En este trabajo predecimos el rango de distribución de la especie utilizando registros de presencia histórica, variables climáticas y algoritmos predictivos obtenidos con MaxEnt. Nos centramos especialmente en su límite más austral en Argentina para indicar los límites históricos de esta especie y describir el nicho que ocupa actualmente en estas poblaciones marginales. Para estimar el efecto de las acciones antrópicas, utilizamos una capa de ocupación del suelo para limitar la distribución del jaguar. Recopilamos una buena cantidad de registros de presencia en todo el área de distribución histórica de la especie y estimamos una distribución regional histórica desde la Patagonia hasta los –50° de latitud. Nuestros resultados ponen de manifiesto que el área de distribución del jaguar se está contrayendo de forma alarmante en el límite meridional y también en el septentrional, y que los cambios de ocupación y de uso del suelo son una amenaza para la especie. Tras restar del nicho estudiado la ocupación del suelo que no es adecuada, descubrimos que la superficie idónea para el jaguar desde el punto de vista ambiental en la zona del estudio se ha reducido hasta el 5,2% de su tamaño original. Por consiguiente, advertimos del elevado riesgo de extinción que acecha al jaguar en Argentina.Vivir al límite: distribución regional y superficie ocupada por el jaguar en retroceso (Panthera onca) Para conservar la biodiversidad, es necesario entender cómo se distribuyen las especies y qué variables ambientales determinan dicha distribución. Los cambios inducidos por el hombre en la ocupación del suelo y la pérdida de hábitat ponen en peligro a numerosas especies de todo el mundo, especialmente a grandes carnívoros. Diferenciar la influencia del clima y la de los usos del suelo en la distribución de jaguar (Panthera onca) es importante para su conservación. Esta especie, que tradicionalmente se distribuía desde los Estados Unidos hasta el sur de Argentina, ha visto reducida su distribución a escala regional y local. En este trabajo predecimos el rango de distribución de la especie utilizando registros de presencia histórica, variables climáticas y algoritmos predictivos obtenidos con MaxEnt. Nos centramos especialmente en su límite más austral en Argentina para indicar los límites históricos de esta especie y describir el nicho que ocupa actualmente en estas poblaciones marginales. Para estimar el efecto de las acciones antrópicas, utilizamos una capa de ocupación del suelo para limitar la distribución del jaguar. Recopilamos una buena cantidad de registros de presencia en todo el área de distribución histórica de la especie y estimamos una distribución regional histórica desde la Patagonia hasta los –50° de latitud. Nuestros resultados ponen de manifiesto que el área de distribución del jaguar se está contrayendo de forma alarmante en el límite meridional y también en el septentrional, y que los cambios de ocupación y de uso del suelo son una amenaza para la especie. Tras restar del nicho estudiado la ocupación del suelo que no es adecuada, descubrimos que la superficie idónea para el jaguar desde el punto de vista ambiental en la zona del estudio se ha reducido hasta el 5,2% de su tamaño original. Por consiguiente, advertimos del elevado riesgo de extinción que acecha al jaguar en Argentina.To preserve biodiversity we need to understand how species are distributed and which aspects of the environment determine these distributions. Human–induced changes in land–cover and loss of habitat threaten many species, particularly large carnivores, in many parts of the world. Differentiating the influence of climate and human land use on the distribution of the jaguar (Panthera onca) is important for the species’ conservation. Historically distributed from the United States to southern Argentina, the jaguar has seen its distribution range decreased at regional and local scales. Here we predict the species’ distribution range using historical records of its presence, climate variables, and MaxEnt predictive algorithms. We focus especially on its southernmost limit in Argentina to indicate the historical limits of this species, and describe its present niche in these edge populations. To estimate the effect of human activity we used a raster of land cover to restrict the jaguar’s distribution. We collected a large amount of presence records through the species’ historical range, and estimated a historical regional distribution ranging from Patagonia up to latitude –50°S. Our findings show the range of the jaguar is decreasing severely in its southern limit and also in its northern limit, and that changes in land cover/use are threats to the species. After subtracting non–suitable land–cover from the studied niche, we found the environmentally suitable area for the jaguar in the study area has decreased to 5.2% of its original size. We thus warn of the high extinction risk of the jaguar in Argentina

Novel phylogenetic algorithm to monitor human tropism in Egyptian H5N1-HPAIV reveals evolution toward efficient human-to-human transmission

Years of endemic infections with highly pathogenic avian influenza (HPAI) A subtype H5N1 virus in poultry and high numbers of infections in humans provide ample opportunity in Egypt for H5N1-HPAIV to develop pandemic potential. In an effort to better understand the viral determinants that facilitate human infections of the Egyptian H5N1-HPAIVvirus, we developed a new phylogenetic algorithm based on a new distance measure derived from the informational spectrum method (ISM). This new approach, which describes functional aspects of the evolution of the hemagglutinin subunit 1 (HA1), revealed a growing group G2 of H5N1-HPAIV in Egypt after 2009 that acquired new informational spectrum (IS) properties suggestive of an increased human tropism and pandemic potential. While in 2006 all viruses in Egypt belonged to the G1 group, by 2011 these viruses were virtually replaced by G2 viruses. All of the G2 viruses displayed four characteristic mutations (D43N, S120(D,N), (S,L)129Δ and I151T), three of which were previously reported to increase binding to the human receptor. Already in 2006–2008 G2 viruses were significantly (p<0.02) more often found in humans than expected from their overall prevalence and this further increased in 2009–2011 (p<0.007). Our approach also identified viruses that acquired additional mutations that we predict to further enhance their human tropism. The extensive evolution of Egyptian H5N1-HPAIV towards a preferential human tropism underlines an urgent need to closely monitor these viruses with respect to molecular determinants of virulence

Characterization of conserved properties of hemagglutinin of H5N1 and human influenza viruses: possible consequences for therapy and infection control

<p>Abstract</p> <p>Background</p> <p>Epidemics caused by highly pathogenic avian influenza virus (HPAIV) are a continuing threat to human health and to the world's economy. The development of approaches, which help to understand the significance of structural changes resulting from the alarming mutational propensity for human-to-human transmission of HPAIV, is of particularly interest. Here we compare informational and structural properties of the hemagglutinin (HA) of H5N1 virus and human influenza virus subtypes, which are important for the receptor/virus interaction.</p> <p>Results</p> <p>Presented results revealed that HA proteins encode highly conserved information that differ between influenza virus subtypes H5N1, H1N1, H3N2, H7N7 and defined an HA domain which may modulate interaction with receptor. We also found that about one third of H5N1 viruses which are isolated during the 2006/07 influenza outbreak in Egypt possibly evolve towards receptor usage similar to that of seasonal H1N1.</p> <p>Conclusion</p> <p>The presented results may help to better understand the interaction of influenza virus with its receptor(s) and to identify new therapeutic targets for drug development.</p

Matrix-assisted laser desorption/ionization time of flight mass spectrometry identification of Vibrio (Listonella) anguillarum isolated from sea bass and sea bream

Vibrio (Listonella) anguillarum is a pathogenic bacterium causing septicaemia in a wide range of marine organisms and inducing severe mortalities, thus it is crucial to conduct its accurate and rapid identification. The aim of this study was to assess MALDI-TOF MS as a method of choice for identification of clinical V. anguillarum isolates from affected marine fish. Since the method accuracy might be influenced by the type of the medium used, as well as by the incubation conditions, we tested V. anguillarum isolates grown on standard media with and without the addition of NaCl, cultured at three incubation temperatures, and at three incubation periods. The best scores were retrieved for V. anguillarum strains grown on NaCl-supplemented tryptone soy agar (TSA) at 22°C and incubated for 48h (100% identification to species level; overall score 2.232), followed by incubation at 37°C and 48h (100% to species level; score 2.192). The strains grown on non-supplemented TSA gave the best readings when incubated at 22°C for 72h (100% identification to species level; overall score 2.182), followed by incubation at 15°C for 72h (100% to species level; score 2.160). Unreliable identifications and no-identifications were growing with the incubation duration at 37°C, on both media, amounting to 88.89% for 7d incubation on supplemented TSA, and 92.60% for 7d incubation on non-supplemented TSA. The age of the cultured strains and use of media significantly impacted the mass spectra, demonstrating that for reliable identification, MALDI-TOF MS protein fingerprinting with the on-target extraction should be performed on strains grown on a NaCl-supplemented medium at temperatures between 15 and 22°C, incubated for 48-72 hours

The interface of syntax with pragmatics and prosody in children with Autism Spectrum Disorders

In order to study problems of individuals with Autism Spectrum Disorders (ASD) with morphosyntax, we investigated twenty high-functioning Greek-speaking children (mean age:6;11) and twenty age- and language-matched typically developing children on environments that allow or forbid object clitics or their corresponding noun phrase. Children with ASD fell behind typically developing in comprehending and producing simple clitics and producing noun phrases in focus structures. The two groups performed similarly in comprehending and producing clitics in clitic left dislocation and in producing noun phrases in non-focus structures. We argue that children with ASD have difficulties at the interface of(morpho)syntax with pragmatics and prosody, namely, distinguishing a discourse prominent element, and considering intonation relevant for a particular interpretation that excludes clitics

A cluster of nucleotide-binding site-leucine-rich repeat genes resides in a barley powdery mildew resistance quantitative trait loci on 7HL

Powdery mildew causes severe yield losses in barley production worldwide. Although many resistance genes have been described, only a few have already been cloned. A strong QTL (quantitative trait locus) conferring resistance to a wide array of powdery mildew isolates was identified in a Spanish barley landrace on the long arm of chromosome 7H. Previous studies narrowed down the QTL position, but were unable to identify candidate genes or physically locate the resistance. In this study, the exome of three recombinant lines from a high-resolution mapping population was sequenced and analyzed, narrowing the position of the resistance down to a single physical contig. Closer inspection of the region revealed a cluster of closely related NBS-LRR (nucleotide-binding site–leucine-rich repeat containing protein) genes. Large differences were found between the resistant lines and the reference genome of cultivar Morex, in the form of PAV (presence-absence variation) in the composition of the NBS-LRR cluster. Finally, a template-guided assembly was performed and subsequent expression analysis revealed that one of the new assembled candidate genes is transcribed. In summary, the results suggest that NBS-LRR genes, absent from the reference and the susceptible genotypes, could be functional and responsible for the powdery mildew resistance. The procedure followed is an example of the use of NGS (next-generation sequencing) tools to tackle the challenges of gene cloning when the target gene is absent from the reference genome