Oyster – Sharing and Re-using Ontologies in a Peer-to-Peer Community

In this paper, we present Oyster, a Peer-to-Peer system for exchanging ontology metadata among communities in the Semantic Web. Oyster exploits semantic web techniques in data representation, query formulation and query result presentation to provide an online solution for sharing ontologies, thus assisting researchers in re-using existing ontologies

An Editorial Workflow Approach For Collaborative Ontology Development

The widespread use of ontologies in the last years has raised new challenges for their development and maintenance. Ontology development has transformed from a process normally performed by one ontology engineer into a process performed collaboratively by a team of ontology engineers, who may be geographically distributed and play different roles. For example, editors may propose changes, while authoritative users approve or reject them following a well defined process. This process, however, has only been partially addressed by existing ontology development methods, methodologies, and tool support. Furthermore, in a distributed environment where ontology editors may be working on local copies of the same ontology, strategies should be in place to ensure that changes in one copy are reflected in all of them. In this paper, we propose a workflow-based model for the collaborative development of ontologies in distributed environments and describe the components required to support them. We illustrate our model with a test case in the fishery domain from the United Nations Food and Agriculture Organisation (FAO)

A holistic approach to collaborative ontology development based on change management

This paper describes our methodological and technological approach for collaborative ontology development in inter-organizational settings. It is based on the formalization of the collaborative ontology development process by means of an explicit editorial workflow, which coordinates proposals for changes among ontology editors in a flexible manner. This approach is supported by new models, methods and strategies for ontology change management in distributed environments: we propose a new form of ontology change representation, organized in layers so as to provide as much independence as possible from the underlying ontology languages, together with methods and strategies for their manipulation, version management, capture, storage and maintenance, some of which are based on existing proposals in the state of the art. Moreover, we propose a set of change propagation strategies that allow keeping distributed copies of the same ontology synchronized. Finally, we illustrate and evaluate our approach with a test case in the fishery domain from the United Nations Food and Agriculture Organisation (FAO). The preliminary results obtained from our evaluation suggest positive indication on the practical value and usability of the work here presented

Change Representation For OWL 2 Ontologies

Ontologies are entities that evolve over time; therefore it is essential to represent and manage changes to ontologies along with the ontologies themselves. In this paper we propose a change ontology for the OWL 2 ontology language. This change ontology comprises a fine-grained taxonomy of ontology changes that considers the lowest-level atomic operations that can be performed in an ontology, but in addition also on other abstraction levels (ontology entity, composite). It thus allows to describe on a fine grained level how an ontology has changed from one version to another, and it also provides the vocabulary to talk about the changes that enables, for instance, to associate provenance or other rich metadata, such as argumentation structures. Additionally, we discuss some useful applications of our change ontology and its technological support

Lifecycle-Support in Architectures for Ontology-Based Information Systems

Ontology-based applications play an increasingly important role in the public and corporate Semantic Web. While today there exist a range of tools and technologies to support specific ontology engineering and management activities, architectural design guidelines for building ontology-based applications are missing. In this paper, we present an architecture for ontology-based applications—covering the complete ontology-lifecycle—that is intended to support software engineers in designing and developing ontology based-applications. We illustrate the use of the architecture in a concrete case study using the NeOn toolkit as one implementation of the architecture

Sobre la distribució de Trifolium diffusum Ehrh. als Països Catalans

We contribute new chorological data on Trifolium diffusum Ehrh. in the Catalan Countries, and we confi rm its existence in Catalonia.[es ] En esta nota a portamos nuevos datos sobre la distribución de Trifolium diffusum Ehrh. en los Países Catalanes y confirmamos su presencia en Cataluña. [ct] En aquesta nota aportem noves dades corològiques de Trifolium diffusum Ehrh. als Països Catalans i confirmem la seva presència a Catalunya

Abrupt changes in the composition and function of fungal communities along an environmental gradient in the High Arctic

Fungi play a key role in soil-plant interactions, nutrient cycling and carbon flow and are essential for the functioning of arctic terrestrial ecosystems. Some studies have shown that the composition of fungal communities is highly sensitive to variations in environmental conditions, but little is known about how the conditions control the role of fungal communities (i.e., their ecosystem function). We used DNA metabarcoding to compare taxonomic and functional composition of fungal communities along a gradient of environmental severity in Northeast Greenland. We analysed soil samples from fell fields, heaths and snowbeds, three habitats with very contrasting abiotic conditions. We also assessed within-habitat differences by comparing three widespread microhabitats (patches with high cover of Dryas, Salix, or bare soil). The data suggest that, along the sampled mesotopographic gradient, the greatest differences in both fungal richness and community composition are observed amongst habitats, while the effect of microhabitat is weaker, although still significant. Furthermore, we found that richness and community composition of fungi are shaped primarily by abiotic factors and to a lesser, though still significant extent, by floristic composition. Along this mesotopographic gradient, environmental severity is strongly correlated with richness in all fungal functional groups: positively in saprotrophic, pathogenic and lichenised fungi, and negatively in ectomycorrhizal and root endophytic fungi. Our results suggest complex interactions amongst functional groups, possibly due to nutrient limitation or competitive exclusion, with potential implications on soil carbon stocks. These findings are important in the light of the environmental changes predicted for the Arctic

When is directed deceased donation justified? Practical, ethical, and legal issues

This paper explores whether directed deceased organ donation should be permitted, and if so under which conditions. While organ donation and allocation systems must be fair and transparent, might it be “one thought too many” to prevent directed donation within families? We proceed by providing a description of the medical and legal context, followed by identification of the main ethical issues involved in directed donation, and then explore these through a series of hypothetical cases similar to those encountered in practice. Ultimately, we set certain conditions under which directed deceased donation may be ethically acceptable. We restrict our discussion to the allocation of organs to recipients already on the waiting list

Rapid Detection of Infestation of Apple Fruits by the Peach Fruit Moth, Carposina sasakii Matsumura, Larvae Using a 0.2-T Dedicated Magnetic Resonance Imaging Apparatus

Infestation of harvested apple fruits by the peach fruit moth (Carposina sasakii Matsumura) was studied using a dedicated magnetic resonance imaging (MRI) apparatus equipped with a 0.2-T permanent magnet. Infested holes on the three-dimensional (3-D) images tracked ecological movements of peach fruit moth larvae within the food fruits, and thus in their natural habitat. Sensitive short solenoid coil and surface coil detectors were devised to shorten measurement times. The short solenoid coil detected infestation holes at a rate of 6.4 s per image by the single-slice 2-D measurement. The multi-slice 2-D measurement provided six slice images of a fruit within 2 min taken by the two detectors. These results indicate that the 0.2-T MRI apparatus allows one to distinguish sound fruits from infested ones, and also as a means for plant protection and the preservation of natural ecological systems in foreign trade