52 research outputs found

    Heterogeneous hydrolytic features for OXA-48-like Ī²-lactamases

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    Objectives Carbapenem-hydrolysing class D Ī²-lactamases of the OXA-48 type are increasingly reported from Enterobacteriaceae. Ī²-Lactamase OXA-48 hydrolyses penicillins very efficiently, but carbapenems only weakly and spares broad-spectrum cephalosporins. Recently, diverse OXA-48-like Ī²-lactamases have been identified worldwide (OXA-162, OXA-181, OXA-163, OXA-204 and OXA-232). They differ by few amino acid substitutions or by amino acid deletions. Methods blaOXA-48, blaOXA-162, blaOXA-163, blaOXA-181, blaOXA-204 and blaOXA-232 were cloned into the same expression vector and expressed in the same Escherichia coli background. Kinetic studies were performed with enzymes purified by ion-exchange chromatography. Determination of hydrolytic activities was performed by UV spectrophotometry. MICs were determined for all recombinant strains, using as background either the WT E. coli TOP10 strain or a porin-deficient E. coli strain. Results Kinetic studies showed that OXA-162 and OXA-204 shared the same hydrolytic properties as OXA-48. On the other hand, OXA-181 possessed a higher ability to hydrolyse carbapenems, while OXA-232 hydrolysed those substrates less efficiently. In contrast to the other OXA-48-like Ī²-lactamases, OXA-163 hydrolysed broad-spectrum cephalosporins very efficiently, but did not possess significant carbapenemase activity. Although several of these OXA-48-like enzymes possess low activity against carbapenems, MICs of carbapenems were significantly elevated when determined for strains possessing permeability defects. Conclusions A detailed comparative analysis of the kinetic properties of the OXA-48-like Ī²-lactamases is provided here. It clarifies the respective features of each OXA-48-like variant and their respective impacts in terms of carbapenem resistanc

    Heterogeneous hydrolytic features for OXA-48-like Ī²-lactamases

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    Objectives: Carbapenem-hydrolysing class D Ī²-lactamases of the OXA-48 type are increasingly reported from Enterobacteriaceae. Ī²-Lactamase OXA-48 hydrolyses penicillins very efficiently, but carbapenems only weakly and spares broad-spectrum cephalosporins. Recently, diverse OXA-48-like Ī²-lactamases have been identified worldwide (OXA-162, OXA-181, OXA-163, OXA-204 and OXA-232). They differ by few amino acid substitutions or by amino acid deletions.Methods: blaOXA-48, blaOXA-162, blaOXA-163, blaOXA-181, blaOXA-204 and blaOXA-232 were cloned into the same expression vector and expressed in the same Escherichia coli background. Kinetic studies were performed with enzymes purified by ion-exchange chromatography. Determination of hydrolytic activities was performed by UV spectrophotometry. MICs were determined for all recombinant strains, using as background either the WT E. coli TOP10 strain or a porin-deficient E. coli strain.Results: Kinetic studies showed that OXA-162 and OXA-204 shared the same hydrolytic properties as OXA-48. On the other hand, OXA-181 possessed a higher ability to hydrolyse carbapenems, while OXA-232 hydrolysed those substrates less efficiently. In contrast to the other OXA-48-like Ī²-lactamases, OXA-163 hydrolysed broad-spectrum cephalosporins very efficiently, but did not possess significant carbapenemase activity. Although several of these OXA-48-like enzymes possess low activity against carbapenems, MICs of carbapenems were significantly elevated when determined for strains possessing permeability defects.Conclusions: A detailed comparative analysis of the kinetic properties of the OXA-48-like Ī²-lactamases is provided here. It clarifies the respective features of each OXA-48-like variant and their respective impacts in terms of carbapenem resistance

    Genetic and biochemical characterization of FRI-1, a carbapenem-hydrolyzing class A Ī²-Lactamase from Enterobacter cloacae

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    An Enterobacter cloacae isolate was recovered from a rectal swab from a patient hospitalized in France with previous travel to Switzerland. It was resistant to penicillins, narrow- and broad-spectrum cephalosporins, aztreonam, and carbapenems but remained susceptible to expanded-spectrum cephalosporins. Whereas PCR-based identification of the most common carbapenemase genes failed, the biochemical Carba NP test II identified an Ambler class A carbapenemase. Cloning experiments followed by sequencing identified a gene encoding a totally novel class A carbapenemase, FRI- 1, sharing 51 to 55% amino acid sequence identity with the closest carbapenemase sequences. However, it shared conserved residues as a source of carbapenemase activity. Purified Ī²-lactamase FRI-1 hydrolyzed penicillins, aztreonam, and carbapenems but spared expanded-spectrum cephalosporins. The 50% inhibitory concentrations (ICā‚…ā‚€s) of clavulanic acid and tazobactam were 10-fold higher than those found for Klebsiella pneumoniae carbapenemase (KPC), IMI, and SME, leading to lower sensitivity of FRI-1 activity to Ī²-lactamase inhibitors. The bla FRI-1 gene was located on a ca. 110-kb untypeable, transferable, and non-self-conjugative plasmid. A putative LysR family regulator-encoding gene at the 5ā€² end of the Ī²-lactamase gene was identified, leading to inducible expression of the blaFRI-1 gene

    Genetic and biochemical characterization of OXA-405, an OXA-48-Type extended-spectrum Ī²-lactamase without significant carbapenemase activity

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    The epidemiology of carbapenemases worldwide is showing that OXA-48 variants are becoming the predominant carbapenemase type in Enterobacteriaceae in many countries. However, not all OXA-48 variants possess significant activity toward carbapenems (e.g., OXA-163). Two Serratia marcescens isolates with resistance either to carbapenems or to extended-spectrum cephalosporins were successively recovered from the same patient. A genomic comparison using pulsed-field gel electrophoresis and automated Rep-PCR typing identified a 97.8% similarity between the two isolates. Both strains were resistant to penicillins and first-generation cephalosporins. The first isolate was susceptible to expanded-spectrum cephalosporins, was resistant to carbapenems, and had a significant carbapenemase activity (positive Carba NP test) related to the expression of OXA-48. The second isolate was resistant to expanded-spectrum cephalosporins, was susceptible to carbapenems, and did not express a significant imipenemase activity, (negative for the Carba NP test) despite possessing a blaOXA-48-type gene. Sequencing identified a novel OXA-48-type Ī²-lactamase, OXA-405, with a four-amino-acid deletion compared to OXA-48. The blaOXA-405 gene was located on a ca. 46-kb plasmid identical to the prototype IncL/M blaOXA-48-carrying plasmid except for a ca. 16.4-kb deletion in the tra operon, leading to the suppression of self-conjugation properties. Biochemical analysis showed that OXA-405 has clavulanic acid-inhibited activity toward expanded-spectrum activity without significant imipenemase activity. This is the first identification of a successive switch of catalytic activity in OXA-48-like Ī²-lactamases, suggesting their plasticity. Therefore, this report suggests that the first-line screening of carbapenemase producers in Enterobacteriaceae may be based on the biochemical detection of carbapenemase activity in clinical settings

    Biochemical and Structural Characterization of OXA-405, an OXA-48 Variant with Extended-Spectrum Ī²-Lactamase Activity

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    International audienceOXA-48-producing Enterobacterales have now widely disseminated globally. A sign of their extensive spread is the identification of an increasing number of OXA-48 variants. Among them, three are particularly interesting, OXA-163, OXA-247 and OXA-405, since they have lost carbapenem activities and gained expanded-spectrum cephalosporin hydrolytic activity subsequent to a four amino-acid (AA) deletion in the Ī²5-Ī²6 loop. We investigated the mechanisms responsible for substrate specificity of OXA-405. Kinetic parameters confirmed that OXA-405 has a hydrolytic profile compatible with an ESBL (hydrolysis of expanded spectrum cephalosporins and susceptibility to class A inhibitors). Molecular modeling techniques and 3D structure determination show that the overall dimeric structure of OXA-405 is very similar to that of OXA-48, except for the Ī²5-Ī²6 loop, which is shorter for OXA-405, suggesting that the length of the Ī²5-Ī²6 loop is critical for substrate specificity. Covalent docking with selected substrates and molecular dynamics simulations evidenced the structural changes induced by substrate binding, as well as the distribution of water molecules in the active site and their role in substrate hydrolysis. All this data may represent the structural basis for the design of new and efficient class D inhibitors

    Genomic characterization of an NDM-9-producing Acinetobacter baumannii clinical isolate and role of Glu152Lys substitution in the enhanced cefiderocol hydrolysis of NDM-9

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    Here, we characterized the first French NDM-9-producing Acinetobacter baumannii isolate. A. baumannii 13A297, which belonged to the STPas25 (international clone IC7), was highly resistant to Ī²-lactams including cefiderocol (MIC >32ā€‰mg/L). Whole genome sequencing (WGS) using both Illumina and Oxford Nanopore technologies revealed a 166-kb non-conjugative plasmid harboring a blaNDM-9 gene embedded in a Tn125 composite transposon. Complementation of E. coli DH5Ī± and A. baumannii CIP70.10 strains with the pABEC plasmid carrying the blaNDM-1 or blaNDM-9 gene, respectively, resulted in a significant increase in cefiderocol MIC values (16 to >256-fold), particularly in the NDM-9 transformants. Interestingly, steady-state kinetic parameters, measured using purified NDM-1 and NDM-9 (Glu152Lys) enzymes, revealed that the affinity for cefiderocol was 3-fold higher for NDM-9 (Kmā€‰=ā€‰53ā€‰Ī¼M) than for NDM-1 (Kmā€‰=ā€‰161ā€‰Ī¼M), leading to a 2-fold increase in catalytic efficiency for NDM-9 (0.13 and 0.069ā€‰Ī¼Māˆ’1.sāˆ’1, for NDM-9 and NDM-1, respectively). Finally, we showed by molecular docking experiments that the residue 152 of NDM-like enzymes plays a key role in cefiderocol binding and resistance, by allowing a strong ionic interaction between the Lys152 residue of NDM-9 with both the Asp223 residue of NDM-9 and the carboxylate group of the R1 substituent of cefiderocol

    CaractĆ©risation molĆ©culaire et biochimique des carbapĆ©nĆØmases les plus rĆ©pandues chez les EntĆ©robactĆ©ries associĆ©es Ć  des infections sĆ©vĆØres en vue de dĆ©velopper de nouveaux inhibiteurs

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    Antibiotics, and particularly Ɵ- lactams, have long been considered the ultimate weapon for the treatment of bacterial infections, because of their effectiveness, good tolerance and low cost. However, bacteria have developed mechanisms of resistance, including against Ī²- lactams with the broadest spectrum of activity, carbapenems. The latter are considered as last resort antibiotics for the treatment of severe infections due to Gram negative bacilli in hospital. This emerging resistance to carbapenems in Enterobacteriaceae is mainly due to the expression of enzymes called carbapenemases capable of inactivating carbapenems. The worldwide exponential spread of these carbapenemase-producing enterobacteria (CPE) represents a major public health issue. Currently, the most common carbapenemases in the world are KPC (Klebsiella pneumoniae carbapenemase), NDM-1 (New Delhi metallo-Ī²-lactamase) and OXA-48 (Oxacillinase). The first KPC was identified in 1996 in the United States, NDM-1 in 2009 in Sweden in a patient from India and OXA-48 in 2003 in Turkey. In France, OXA-48- type are the most abundant carbapenemases with nearly 70% of the EPCs. Thus, the repercussion of their dissemination and the development of new inhibitors capable of inactivating carbapenemases is becoming more and more urgent.The aims of this thesis were to better understand the mode of action of the 3 main carbapenemases from a molecular and biochemical point of view, in order to identify the structural elements necessary for their functioning, but also to lay the basis for the development of "pan-inhibitors" and noveldiagnostic tools. For this purpose, the biochemical characterization of carbapenemases of the KPC, NDM and OXA-48 type, their natural variants and mutants generated in vitro has been undertaken.We could highlight the involvement of specific residues and structural elements necessary for the hydrolysis of carbapenems. The crystallographic and NMR study as well as the in silico (modeling) studies of these enzymes and their respective mutants, allowed us to better understand the enzyme-substrate interaction mode. We could thus understand the basis of the impressive capacity of these carbapenemases to adapt and therefore to evolve according to the selection pressures exerted.In collaboration with several chemists we participated in the development of different series of "pan-inhibitors" that were able to inhibit the 3 classes of carbapenemases. Thus we could show the inhibitory properties of some compounds of the family of flavonoids including myricetin, the most active molecule. We have also been able to identify a series of compounds, imidazolines, possessing a pan- inhibitory effect with sub-micromolar IC50 values and therefore compatible with in vivo use. Finally, we participated in the development (in collaboration with the CEA) of a rapid diagnostic tool based on theimmunochromatographic, allowing the detection of EPCs in less than 15 minutes.Les antibiotiques, et plus particulieĢ€rement les Ī²-lactamines, furent pendant longtemps consideĢreĢs comme lā€™arme absolue pour le traitement des infections bacteĢriennes, du fait de leur efficaciteĢ, leur bonne toleĢrance et de leur faible couĢ‚t. Cependant, les bacteĢries ont deĢveloppeĢ des meĢcanismes de reĢsistance, y compris vis-aĢ€-vis des Ī²-lactamines posseĢdant le spectre dā€™activiteĢ le plus large, les carbapeĢneĢ€mes. Ces derniers sont consideĢreĢs comme les antibiotiques de derniers recours pour le traitement des infections seĢveĢ€res aĢ€ bacilles aĢ€ Gram neĢgatif en milieu hospitalier. Chez les enteĢrobacteĢries, cette reĢsistance eĢmergente aux carbapeĢneĢ€mes est principalement due aĢ€ lā€™expression dā€™enzymes appeleĢes les carbapeĢneĢ€mases capables dā€™inactiver les carbapeĢneĢ€mes. Lā€™eĢmergence exponentielle aĢ€ lā€™eĢchelle mondiale de ces enteĢrobacteĢries productrices de carbapeĢneĢ€mases (EPC) constitue un probleĢ€me majeur de santeĢ publique. Actuellement, les carbapeĢneĢmases les plus reĢpandues dans le monde sont les KPC (Klebsiella pneumoniae carbapenemase), NDM-1 (New Delhi metallo- Ī²- lactamase) et OXA-48 (Oxacillinase). La premieĢ€re KPC a eĢteĢ identifieĢe en 1996 aux Etats- Unis, NDM-1 en 2009 en SueĢ€de chez une patiente en provenance dā€™Inde et OXA-48 en 2003 en Turquie. En France, les carbapeĢneĢ€mases de type OXA-48 sont largement majoritaires et repreĢsentent preĢ€s de 70% des EPC. Ainsi, le retentissement de leur disseĢmination et le besoin de deĢvelopper de nouveaux inhibiteurs capables dā€™inactiver les carbapeĢneĢ€mases se fait de plus en plus pressante.Cette theĢ€se a pour objectif de mieux comprendre le mode dā€™ action de ces 3 carbapeĢneĢ€mases dā€™un point de vue moleĢculaire et biochimique, afin dā€™ identifier les eĢleĢments structuraux neĢcessaires aĢ€ leur fonctionnement, mais aussi de poser les bases du deĢveloppement de Ā« pan-inhibiteurs Ā» et de nouveaux outils de diagnostics. Pour cela, la caracteĢrisation biochimique des carbapeĢneĢ€mases de type KPC, NDM et OXA-48, de leurs variants naturels et de mutants geĢneĢreĢs in vitro a eĢteĢ entreprise. Il a pu eĢ‚tre mis en exergue lā€™implication de reĢsidus speĢcifiques et dā€™eĢleĢments structuraux neĢcessaires aĢ€ lā€™ hydrolyse des carbapeĢneĢ€mes. L ā€™ eĢtude cristallographique et RMN ainsi que lā€™eĢtude in silico (modeĢlisation) de ces enzymes et de leurs mutants respectifs, nous a permis de mieux comprendre le mode dā€™ interaction enzyme- substrat. Nous avons ainsi pu comprendre les bases de la capaciteĢ impressionnante de ces carbapeĢneĢ€mases aĢ€ sā€™adapter et aĢ€ eĢvoluer en fonction des pressions de seĢlections exerceĢes.En collaborations avec diffeĢrentes eĢquipes de chimistes nous avons deĢveloppeĢs diffeĢrentes seĢries de moleĢcules Ā« pan-inhibiteurs Ā» capables dā€™inhiber les 3 classes de carbapeĢneĢ€mases. Ainsi nous avons montreĢ un effet inhibiteur de certains composeĢs de la famille des flavonoiĢˆdes dont la myreĢceĢtine, moleĢcule la plus active. Nous avons eĢgalement identifieĢ une seĢrie de composeĢs, les imidazolines, posseĢdant un effet pan-inhibiteur avec des valeurs de CI50 sub-micromolaires et donc compatible avec une utilisation in vivo.Enfin, nous avons participeĢ au deĢveloppement (en collaboration avec le CEA) dā€™ un outil de diagnostic rapide baseĢ sur lā€™immunochromatographie, permettant deĢtection des EPC en moins de 15 minutes

    MOLECULAR AND BIOCHEMICAL CHARACTERIZATION OF THE MOST POPULAR CARBAPENEMASES IN ENTEROBACTERIES ASSOCIATED WITH SEVERE INFECTIONS IN ORDER TO DEVELOP NEW INHIBITORS

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    Les antibiotiques, et plus particulieĢ€rement les Ī²-lactamines, furent pendant longtemps consideĢreĢs comme lā€™arme absolue pour le traitement des infections bacteĢriennes, du fait de leur efficaciteĢ, leur bonne toleĢrance et de leur faible couĢ‚t. Cependant, les bacteĢries ont deĢveloppeĢ des meĢcanismes de reĢsistance, y compris vis-aĢ€-vis des Ī²-lactamines posseĢdant le spectre dā€™activiteĢ le plus large, les carbapeĢneĢ€mes. Ces derniers sont consideĢreĢs comme les antibiotiques de derniers recours pour le traitement des infections seĢveĢ€res aĢ€ bacilles aĢ€ Gram neĢgatif en milieu hospitalier. Chez les enteĢrobacteĢries, cette reĢsistance eĢmergente aux carbapeĢneĢ€mes est principalement due aĢ€ lā€™expression dā€™enzymes appeleĢes les carbapeĢneĢ€mases capables dā€™inactiver les carbapeĢneĢ€mes. Lā€™eĢmergence exponentielle aĢ€ lā€™eĢchelle mondiale de ces enteĢrobacteĢries productrices de carbapeĢneĢ€mases (EPC) constitue un probleĢ€me majeur de santeĢ publique. Actuellement, les carbapeĢneĢmases les plus reĢpandues dans le monde sont les KPC (Klebsiella pneumoniae carbapenemase), NDM-1 (New Delhi metallo- Ī²- lactamase) et OXA-48 (Oxacillinase). La premieĢ€re KPC a eĢteĢ identifieĢe en 1996 aux Etats- Unis, NDM-1 en 2009 en SueĢ€de chez une patiente en provenance dā€™Inde et OXA-48 en 2003 en Turquie. En France, les carbapeĢneĢ€mases de type OXA-48 sont largement majoritaires et repreĢsentent preĢ€s de 70% des EPC. Ainsi, le retentissement de leur disseĢmination et le besoin de deĢvelopper de nouveaux inhibiteurs capables dā€™inactiver les carbapeĢneĢ€mases se fait de plus en plus pressante.Cette theĢ€se a pour objectif de mieux comprendre le mode dā€™ action de ces 3 carbapeĢneĢ€mases dā€™un point de vue moleĢculaire et biochimique, afin dā€™ identifier les eĢleĢments structuraux neĢcessaires aĢ€ leur fonctionnement, mais aussi de poser les bases du deĢveloppement de Ā« pan-inhibiteurs Ā» et de nouveaux outils de diagnostics. Pour cela, la caracteĢrisation biochimique des carbapeĢneĢ€mases de type KPC, NDM et OXA-48, de leurs variants naturels et de mutants geĢneĢreĢs in vitro a eĢteĢ entreprise. Il a pu eĢ‚tre mis en exergue lā€™implication de reĢsidus speĢcifiques et dā€™eĢleĢments structuraux neĢcessaires aĢ€ lā€™ hydrolyse des carbapeĢneĢ€mes. L ā€™ eĢtude cristallographique et RMN ainsi que lā€™eĢtude in silico (modeĢlisation) de ces enzymes et de leurs mutants respectifs, nous a permis de mieux comprendre le mode dā€™ interaction enzyme- substrat. Nous avons ainsi pu comprendre les bases de la capaciteĢ impressionnante de ces carbapeĢneĢ€mases aĢ€ sā€™adapter et aĢ€ eĢvoluer en fonction des pressions de seĢlections exerceĢes.En collaborations avec diffeĢrentes eĢquipes de chimistes nous avons deĢveloppeĢs diffeĢrentes seĢries de moleĢcules Ā« pan-inhibiteurs Ā» capables dā€™inhiber les 3 classes de carbapeĢneĢ€mases. Ainsi nous avons montreĢ un effet inhibiteur de certains composeĢs de la famille des flavonoiĢˆdes dont la myreĢceĢtine, moleĢcule la plus active. Nous avons eĢgalement identifieĢ une seĢrie de composeĢs, les imidazolines, posseĢdant un effet pan-inhibiteur avec des valeurs de CI50 sub-micromolaires et donc compatible avec une utilisation in vivo.Enfin, nous avons participeĢ au deĢveloppement (en collaboration avec le CEA) dā€™ un outil de diagnostic rapide baseĢ sur lā€™immunochromatographie, permettant deĢtection des EPC en moins de 15 minutes.Antibiotics, and particularly Ɵ- lactams, have long been considered the ultimate weapon for the treatment of bacterial infections, because of their effectiveness, good tolerance and low cost. However, bacteria have developed mechanisms of resistance, including against Ī²- lactams with the broadest spectrum of activity, carbapenems. The latter are considered as last resort antibiotics for the treatment of severe infections due to Gram negative bacilli in hospital. This emerging resistance to carbapenems in Enterobacteriaceae is mainly due to the expression of enzymes called carbapenemases capable of inactivating carbapenems. The worldwide exponential spread of these carbapenemase-producing enterobacteria (CPE) represents a major public health issue. Currently, the most common carbapenemases in the world are KPC (Klebsiella pneumoniae carbapenemase), NDM-1 (New Delhi metallo-Ī²-lactamase) and OXA-48 (Oxacillinase). The first KPC was identified in 1996 in the United States, NDM-1 in 2009 in Sweden in a patient from India and OXA-48 in 2003 in Turkey. In France, OXA-48- type are the most abundant carbapenemases with nearly 70% of the EPCs. Thus, the repercussion of their dissemination and the development of new inhibitors capable of inactivating carbapenemases is becoming more and more urgent.The aims of this thesis were to better understand the mode of action of the 3 main carbapenemases from a molecular and biochemical point of view, in order to identify the structural elements necessary for their functioning, but also to lay the basis for the development of "pan-inhibitors" and noveldiagnostic tools. For this purpose, the biochemical characterization of carbapenemases of the KPC, NDM and OXA-48 type, their natural variants and mutants generated in vitro has been undertaken.We could highlight the involvement of specific residues and structural elements necessary for the hydrolysis of carbapenems. The crystallographic and NMR study as well as the in silico (modeling) studies of these enzymes and their respective mutants, allowed us to better understand the enzyme-substrate interaction mode. We could thus understand the basis of the impressive capacity of these carbapenemases to adapt and therefore to evolve according to the selection pressures exerted.In collaboration with several chemists we participated in the development of different series of "pan-inhibitors" that were able to inhibit the 3 classes of carbapenemases. Thus we could show the inhibitory properties of some compounds of the family of flavonoids including myricetin, the most active molecule. We have also been able to identify a series of compounds, imidazolines, possessing a pan- inhibitory effect with sub-micromolar IC50 values and therefore compatible with in vivo use. Finally, we participated in the development (in collaboration with the CEA) of a rapid diagnostic tool based on theimmunochromatographic, allowing the detection of EPCs in less than 15 minutes

    In silico prediction of Ī²-lactamase hydrolysis efficiency: Finding the right balance between kinetic and thermodynamic terms

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    International audienceDuring recent decades, an alarming worldwide spread and diversification of Ī²-lactamases has been obsd. in Gram-neg. species, conferring resistance to Ī²-lactam antibiotics. In this context, the prediction of future Ī²-lactamase mutants becomes an essential issue and we have developed a protocol that allows the evaluation of the energetic cost (thermodn.) assocd. with a mutation in the active site of a Ī²-lactamase, in the presence of the Ī²-lactam substrate. The catalytic efficiency for the Ī²-lactamase-mediated hydrolysis of Ī²-lactam antibiotics is represented by the ratio of a kinetic term (kcat) and a thermodn. term (Km). Here we present an approach based on quantum calcns. and mol. dynamics simulations allowing to est. the kcat term by evaluating Ī²-lactamases from different classes, in the presence of several Ī²-lactam substrates. Therefore, we are now able to predict in silico the overall catalytic efficiency for a large panel of Ī²-lactamases. The precision of this prediction, which depends in turn on the precision for predicting the individual terms kcat and Km, will be discussed and compared with the precision of exptl. values. These results will ultimately provide essential information for the fight against resistance to Ī²-lactam antibiotics

    A greater than expected variability among OXA-48-like carbapenemases

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    International audienceBackground: OXA-48-like carbapenemases represent a major health concern given their difficult detection, their epidemic behavior and their propensity to modify their spectrum of hydrolysis through point mutations. Objective: To get an extensive view on the current variability among OXA-48-like enzymes, we haveretrieved all the sequences available from NCBI (National Center for Biotechnology Information).Method: We carried out several BLAST (Basic Local Alignment Search Tool) searches in the NCBIā€™s ā€œnrā€ and ā€œnr_envā€ databases (downloaded on December 20th, 2016) using known members of OXA-48-likesubfamily as query.Results: While 23 variants have assigned OXA-numbers, 62 novel alleles have been identified. Theycorrespond to novel enzymes with mutations located in some cases within the conserved active site motives. The important number of novel variants identified by this study is of great interest, since it provides a more realistic assessment of OXA-48-like variants.Conclusion: A large variety of OXA-48-like enzymes has been unraveled through our bioinformatic search for variants. The finding of OXA-48-like enzymes in environmental isolates may reflect the contamination by Enterobactericeae producing OXA-48-like enzymes and/or the presence of Shewanella spp. isolates.Introducere: Carbapenemazele OXA-48-like reprezintă o problemă majoră pentru sănătate, avĆ¢nd Ć®nvedere detectarea lor dificilă, comportamentul epidemic și tendința lor de a-și modifica spectrul de hidrolizăprin mutații punctiforme.Obiectiv: Pentru a obține o imagine amplă asupra variabilității actuale a enzimelor OXA-48-like, amrecuperat toate secvențele disponibile de la NCBI (National Center for Biotechnology Information).Metodă: Am efectuat mai multe căutări BLAST (Basic Local Alignment Search Tool) Ć®n bazele de dateā€žnrā€ și ā€žnr_envā€ ale NCBI (descărcate pe 20 decembrie 2016), utilizĆ¢nd ca interogare membrii cunoscuți aisub-familiei OXA-48.Rezultate: Ǝn timp ce unui număr de 23 de variante li s-au atribuit numere OXA, au fost identificate 62 dealele noi. Acestea corespund noilor enzime cu mutații localizate Ć®n unele cazuri Ć®n cadrul motivelor conservateale site-ului activ. Numărul important de variante noi identificate Ć®n acest studiu este de mare interes, deoareceoferă o evaluare mai realistă a variantelor de tip OXA-48-like.Concluzie: O mare varietate de enzime OXA-48-like a fost descoperită Ć®n urma căutării bioinformaticea variantelor. Detectarea enzimelor OXA-48-like Ć®n izolate din mediu poate reflecta contaminarea cuEnterobactericeae producătoare de enzime OXA-48-like și/sau prezența de izolate Shewanella spp.Cuvinte-cheie: OXA-48, variabilitate, variante
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