Impact on tuberculosis incidence rates of removal of repeat notification records

OBJETIVO: Avaliar o impacto nas taxas de incidência de tuberculose com a exclusão de registros indevidamente repetidos no sistema de notificação. MÉTODOS: Foram analisados dados do Sistema de Informação de Agravos de Notificação do Ministério da Saúde, referentes ao período de 2000 a 2004. Os registros repetidos foram identificados por pareamento probabilístico e classificados em seis categorias excludentes que determinaram suas remoções, vinculações ou permanências na base. RESULTADOS: Verificou-se que 73,7% das notificações eram únicas, 18,9% formavam duplas, 4,7% triplas e 2,7% grupos de quatro ou mais registros. Dentre os registros repetidos, 47,3% foram classificados como transferência entre unidades de saúde, 23,6% reingresso, 16,4% duplicidade verdadeira, 10% recidiva, 2,5% foram inconclusivos e 0,2% tinham dados incompletos. Essas percentagens variaram entre estados. A exclusão de registros indevidamente repetidos resultou em redução na taxa de incidência por 100.000 habitantes de 6,1% em 2000 (de 44 para 41,3), 8,3% em 2001 (de 44,5 para 40,8), 9,4% em 2002 (de 45,8 para 41,5), 9,2% em 2003 (de 46,9 para 42,6) e 8,4% em 2004 (de 45,4 para 41,6). CONCLUSÕES: Os resultados sugerem que as taxas observadas de incidência de tuberculose representem estimativas mais próximas do que seriam os valores reais do que as obtidas com a base em seu estado bruto, tanto em nível nacional como estadual. A prática de pareamento de registros de notificação de tuberculose deve ser estimulada e mantida para melhoria da qualidade dos dados de notificação.OBJECTIVE: To evaluate the impact on tuberculosis (TB) incidence rates of removal of improper duplicate records from the notification system. METHODS: Data from the Sistema de Informação de Agravos de Notificação (Brazilian Information System for Tuberculosis Notification) from 2000 to 2004 were analyzed. Repeat records were identified through probabilistic record linkage and classified into six mutually exclusive categories and then kept, combined or removed from database. RESULTS: Of all TB records, 73.7% had no duplicate, 18.9% were duplicate, 4.7% were triplicate, and 2.7% were quadruplicate or more. Of all repeat records, 47.3% were classified as transfer in/out; 23.6% return after default, 16.4% true duplicates, 10% relapse, 2.5% inconclusive and 0.2% had missing data. These proportions were different in Brazilian states. Removal of improper duplicate records reduced TB incidence rate per 100.000 inhabitants by 6.1% in the year 2000 (from 44 to 41.3), 8.3% in 2001 (from 44.5 to 40.8), 9.4% in 2002 (from 45.8 to 41.5), 9.2% in 2003 (from 46.9 to 42.6) and 8.4% in 2004 (from 45.4 to 41.6). CONCLUSIONS: The study results indicate that the observed tuberculosis incidence rates represent estimates that would be closer to the actual rates than those obtained from the raw database at state and country level. The use of record linkage approach should be promoted for better quality of notification system data

Efeito da remoção de notificações repetidas sobre a incidência da tuberculose no Brasil

OBJECTIVE: To evaluate the impact on tuberculosis (TB) incidence rates of removal of improper duplicate records from the notification system. METHODS: Data from the Sistema de Informação de Agravos de Notificação (Brazilian Information System for Tuberculosis Notification) from 2000 to 2004 were analyzed. Repeat records were identified through probabilistic record linkage and classified into six mutually exclusive categories and then kept, combined or removed from database. RESULTS: Of all TB records, 73.7% had no duplicate, 18.9% were duplicate, 4.7% were triplicate, and 2.7% were quadruplicate or more. Of all repeat records, 47.3% were classified as transfer in/out; 23.6% return after default, 16.4% true duplicates, 10% relapse, 2.5% inconclusive and 0.2% had missing data. These proportions were different in Brazilian states. Removal of improper duplicate records reduced TB incidence rate per 100.000 inhabitants by 6.1% in the year 2000 (from 44 to 41.3), 8.3% in 2001 (from 44.5 to 40.8), 9.4% in 2002 (from 45.8 to 41.5), 9.2% in 2003 (from 46.9 to 42.6) and 8.4% in 2004 (from 45.4 to 41.6). CONCLUSIONS: The study results indicate that the observed tuberculosis incidence rates represent estimates that would be closer to the actual rates than those obtained from the raw database at state and country level. The use of record linkage approach should be promoted for better quality of notification system data.OBJETIVO: Avaliar o impacto nas taxas de incidência de tuberculose com a exclusão de registros indevidamente repetidos no sistema de notificação. MÉTODOS: Foram analisados dados do Sistema de Informação de Agravos de Notificação do Ministério da Saúde, referentes ao período de 2000 a 2004. Os registros repetidos foram identificados por pareamento probabilístico e classificados em seis categorias excludentes que determinaram suas remoções, vinculações ou permanências na base. RESULTADOS: Verificou-se que 73,7% das notificações eram únicas, 18,9% formavam duplas, 4,7% triplas e 2,7% grupos de quatro ou mais registros. Dentre os registros repetidos, 47,3% foram classificados como transferência entre unidades de saúde, 23,6% reingresso, 16,4% duplicidade verdadeira, 10% recidiva, 2,5% foram inconclusivos e 0,2% tinham dados incompletos. Essas percentagens variaram entre estados. A exclusão de registros indevidamente repetidos resultou em redução na taxa de incidência por 100.000 habitantes de 6,1% em 2000 (de 44 para 41,3), 8,3% em 2001 (de 44,5 para 40,8), 9,4% em 2002 (de 45,8 para 41,5), 9,2% em 2003 (de 46,9 para 42,6) e 8,4% em 2004 (de 45,4 para 41,6). CONCLUSÕES: Os resultados sugerem que as taxas observadas de incidência de tuberculose representem estimativas mais próximas do que seriam os valores reais do que as obtidas com a base em seu estado bruto, tanto em nível nacional como estadual. A prática de pareamento de registros de notificação de tuberculose deve ser estimulada e mantida para melhoria da qualidade dos dados de notificação

III Livro de Resultados de Pesquisa do GRAED PUCPR: trabalhos científicos em análise econômica do direito

Trata-se de obra coletiva composta por trabalhos científicos de membros e parceiros do GRAED PUCPR, que se apresenta como mecanismo de promoção de pesquisas científicas na área de Análise Econômica do Direito. Para tanto, são consolidados comunicados científicos apresentados no III Encontro de Pesquisa do GRAED PUCPR, resultados do Programa Institucional de Bolsas de Iniciação Científica (PIBIC) realizados por membros do grupo e artigos científicos avaliados por pares e cujas pesquisas relacionam-se com os projetos do grupo

ATLANTIC BIRD TRAITS: a data set of bird morphological traits from the Atlantic forests of South America

Scientists have long been trying to understand why the Neotropical region holds the highest diversity of birds on Earth. Recently, there has been increased interest in morphological variation between and within species, and in how climate, topography, and anthropogenic pressures may explain and affect phenotypic variation. Because morphological data are not always available for many species at the local or regional scale, we are limited in our understanding of intra- and interspecies spatial morphological variation. Here, we present the ATLANTIC BIRD TRAITS, a data set that includes measurements of up to 44 morphological traits in 67,197 bird records from 2,790 populations distributed throughout the Atlantic forests of South America. This data set comprises information, compiled over two centuries (1820–2018), for 711 bird species, which represent 80% of all known bird diversity in the Atlantic Forest. Among the most commonly reported traits are sex (n = 65,717), age (n = 63,852), body mass (n = 58,768), flight molt presence (n = 44,941), molt presence (n = 44,847), body molt presence (n = 44,606), tail length (n = 43,005), reproductive stage (n = 42,588), bill length (n = 37,409), body length (n = 28,394), right wing length (n = 21,950), tarsus length (n = 20,342), and wing length (n = 18,071). The most frequently recorded species are Chiroxiphia caudata (n = 1,837), Turdus albicollis (n = 1,658), Trichothraupis melanops (n = 1,468), Turdus leucomelas (n = 1,436), and Basileuterus culicivorus (n = 1,384). The species recorded in the greatest number of sampling localities are Basileuterus culicivorus (n = 243), Trichothraupis melanops (n = 242), Chiroxiphia caudata (n = 210), Platyrinchus mystaceus (n = 208), and Turdus rufiventris (n = 191). ATLANTIC BIRD TRAITS (ABT) is the most comprehensive data set on measurements of bird morphological traits found in a biodiversity hotspot; it provides data for basic and applied research at multiple scales, from individual to community, and from the local to the macroecological perspectives. No copyright or proprietary restrictions are associated with the use of this data set. Please cite this data paper when the data are used in publications or teaching and educational activities. © 2019 The Authors. Ecology © 2019 The Ecological Society of Americ

ATLANTIC BIRD TRAITS

Scientists have long been trying to understand why the Neotropical region holds the highest diversity of birds on Earth. Recently, there has been increased interest in morphological variation between and within species, and in how climate, topography, and anthropogenic pressures may explain and affect phenotypic variation. Because morphological data are not always available for many species at the local or regional scale, we are limited in our understanding of intra- and interspecies spatial morphological variation. Here, we present the ATLANTIC BIRD TRAITS, a data set that includes measurements of up to 44 morphological traits in 67,197 bird records from 2,790 populations distributed throughout the Atlantic forests of South America. This data set comprises information, compiled over two centuries (1820–2018), for 711 bird species, which represent 80% of all known bird diversity in the Atlantic Forest. Among the most commonly reported traits are sex (n = 65,717), age (n = 63,852), body mass (n = 58,768), flight molt presence (n = 44,941), molt presence (n = 44,847), body molt presence (n = 44,606), tail length (n = 43,005), reproductive stage (n = 42,588), bill length (n = 37,409), body length (n = 28,394), right wing length (n = 21,950), tarsus length (n = 20,342), and wing length (n = 18,071). The most frequently recorded species are Chiroxiphia caudata (n = 1,837), Turdus albicollis (n = 1,658), Trichothraupis melanops (n = 1,468), Turdus leucomelas (n = 1,436), and Basileuterus culicivorus (n = 1,384). The species recorded in the greatest number of sampling localities are Basileuterus culicivorus (n = 243), Trichothraupis melanops (n = 242), Chiroxiphia caudata (n = 210), Platyrinchus mystaceus (n = 208), and Turdus rufiventris (n = 191). ATLANTIC BIRD TRAITS (ABT) is the most comprehensive data set on measurements of bird morphological traits found in a biodiversity hotspot; it provides data for basic and applied research at multiple scales, from individual to community, and from the local to the macroecological perspectives. No copyright or proprietary restrictions are associated with the use of this data set. Please cite this data paper when the data are used in publications or teaching and educational activities. © 2019 The Authors. Ecology © 2019 The Ecological Society of Americ

NEOTROPICAL ALIEN MAMMALS: a data set of occurrence and abundance of alien mammals in the Neotropics

Biological invasion is one of the main threats to native biodiversity. For a species to become invasive, it must be voluntarily or involuntarily introduced by humans into a nonnative habitat. Mammals were among first taxa to be introduced worldwide for game, meat, and labor, yet the number of species introduced in the Neotropics remains unknown. In this data set, we make available occurrence and abundance data on mammal species that (1) transposed a geographical barrier and (2) were voluntarily or involuntarily introduced by humans into the Neotropics. Our data set is composed of 73,738 historical and current georeferenced records on alien mammal species of which around 96% correspond to occurrence data on 77 species belonging to eight orders and 26 families. Data cover 26 continental countries in the Neotropics, ranging from Mexico and its frontier regions (southern Florida and coastal-central Florida in the southeast United States) to Argentina, Paraguay, Chile, and Uruguay, and the 13 countries of Caribbean islands. Our data set also includes neotropical species (e.g., Callithrix sp., Myocastor coypus, Nasua nasua) considered alien in particular areas of Neotropics. The most numerous species in terms of records are from Bos sp. (n = 37,782), Sus scrofa (n = 6,730), and Canis familiaris (n = 10,084); 17 species were represented by only one record (e.g., Syncerus caffer, Cervus timorensis, Cervus unicolor, Canis latrans). Primates have the highest number of species in the data set (n = 20 species), partly because of uncertainties regarding taxonomic identification of the genera Callithrix, which includes the species Callithrix aurita, Callithrix flaviceps, Callithrix geoffroyi, Callithrix jacchus, Callithrix kuhlii, Callithrix penicillata, and their hybrids. This unique data set will be a valuable source of information on invasion risk assessments, biodiversity redistribution and conservation-related research. There are no copyright restrictions. Please cite this data paper when using the data in publications. We also request that researchers and teachers inform us on how they are using the data

Brazilian Flora 2020: Leveraging the power of a collaborative scientific network

International audienceThe shortage of reliable primary taxonomic data limits the description of biological taxa and the understanding of biodiversity patterns and processes, complicating biogeographical, ecological, and evolutionary studies. This deficit creates a significant taxonomic impediment to biodiversity research and conservation planning. The taxonomic impediment and the biodiversity crisis are widely recognized, highlighting the urgent need for reliable taxonomic data. Over the past decade, numerous countries worldwide have devoted considerable effort to Target 1 of the Global Strategy for Plant Conservation (GSPC), which called for the preparation of a working list of all known plant species by 2010 and an online world Flora by 2020. Brazil is a megadiverse country, home to more of the world's known plant species than any other country. Despite that, Flora Brasiliensis, concluded in 1906, was the last comprehensive treatment of the Brazilian flora. The lack of accurate estimates of the number of species of algae, fungi, and plants occurring in Brazil contributes to the prevailing taxonomic impediment and delays progress towards the GSPC targets. Over the past 12 years, a legion of taxonomists motivated to meet Target 1 of the GSPC, worked together to gather and integrate knowledge on the algal, plant, and fungal diversity of Brazil. Overall, a team of about 980 taxonomists joined efforts in a highly collaborative project that used cybertaxonomy to prepare an updated Flora of Brazil, showing the power of scientific collaboration to reach ambitious goals. This paper presents an overview of the Brazilian Flora 2020 and provides taxonomic and spatial updates on the algae, fungi, and plants found in one of the world's most biodiverse countries. We further identify collection gaps and summarize future goals that extend beyond 2020. Our results show that Brazil is home to 46,975 native species of algae, fungi, and plants, of which 19,669 are endemic to the country. The data compiled to date suggests that the Atlantic Rainforest might be the most diverse Brazilian domain for all plant groups except gymnosperms, which are most diverse in the Amazon. However, scientific knowledge of Brazilian diversity is still unequally distributed, with the Atlantic Rainforest and the Cerrado being the most intensively sampled and studied biomes in the country. In times of “scientific reductionism”, with botanical and mycological sciences suffering pervasive depreciation in recent decades, the first online Flora of Brazil 2020 significantly enhanced the quality and quantity of taxonomic data available for algae, fungi, and plants from Brazil. This project also made all the information freely available online, providing a firm foundation for future research and for the management, conservation, and sustainable use of the Brazilian funga and flora