Effects of Net Depth Reduction to Bigeye Tuna (Thunnus obesus) Catch

Analysis on the catch of Bigeye tuna (Thunnus obesus) from purse seine and ring nets of various net depths was conducted to assess the effect of reducing net depth as a compatible measure the Philippines has implemented and reducing the catch of Bigeye in its internal waters and the Exclusive Economic Zone (EEZ). The study was based on observer reports from ring net and purse seine fishing vessels operating in internal waters and EEZ as well as from group seine operations in the high seas pocket 1. Nets were classed by depth to determine and compare variations on the catch of Bigeye, catch rates and relative proportion, species composition, and fishing grounds. Results indicated that the catch of Bigeye is correlated with the depth of net, with a significantly higher catch of Bigeye in deeper nets. The result of the study is consistent with other studies elsewhere, and in consonance with the implementation of Fisheries Administrative Order 236 limiting the depth to 115 fathoms for ring net and purse seine operating in Philippine internal waters and the EEZ as a compatible measure to reduce the catch of Bigeye

Etiology of Severe Non-malaria Febrile Illness in Northern Tanzania: A Prospective Cohort Study.

The syndrome of fever is a commonly presenting complaint among persons seeking healthcare in low-resource areas, yet the public health community has not approached fever in a comprehensive manner. In many areas, malaria is over-diagnosed, and patients without malaria have poor outcomes. We prospectively studied a cohort of 870 pediatric and adult febrile admissions to two hospitals in northern Tanzania over the period of one year using conventional standard diagnostic tests to establish fever etiology. Malaria was the clinical diagnosis for 528 (60.7%), but was the actual cause of fever in only 14 (1.6%). By contrast, bacterial, mycobacterial, and fungal bloodstream infections accounted for 85 (9.8%), 14 (1.6%), and 25 (2.9%) febrile admissions, respectively. Acute bacterial zoonoses were identified among 118 (26.2%) of febrile admissions; 16 (13.6%) had brucellosis, 40 (33.9%) leptospirosis, 24 (20.3%) had Q fever, 36 (30.5%) had spotted fever group rickettsioses, and 2 (1.8%) had typhus group rickettsioses. In addition, 55 (7.9%) participants had a confirmed acute arbovirus infection, all due to chikungunya. No patient had a bacterial zoonosis or an arbovirus infection included in the admission differential diagnosis. Malaria was uncommon and over-diagnosed, whereas invasive infections were underappreciated. Bacterial zoonoses and arbovirus infections were highly prevalent yet overlooked. An integrated approach to the syndrome of fever in resource-limited areas is needed to improve patient outcomes and to rationally target disease control efforts

Suitability of 210Pbex, 137Cs and 239+240Pu as soil erosion tracers in western Kenya

Land degradation resulting from soil erosion is a global concern, with the greatest risk in developing countries where food and land resources can be limited. The use of fallout radionuclides (FRNs) is a proven method for determining short and medium-term rates of soil erosion, to help improve our understanding of soil erosion processes. There has been limited use of these methods in tropical Africa due to the analytical challenges associated with 137Cs, where inventories are an order of magnitude lower than in the Europe. This research aimed to demonstrate the usability of 239+240Pu as a soil erosion tracer in western Kenya compared to conventional isotopes 210Pbex and 137Cs through the determination of FRN depth profiles at reference sites. Across six reference sites 239+240Pu showed the greatest potential, with the lowest coefficient of variation and the greatest peak-to-detection limit ratio of 640 compared to 5 and 1 for 210Pbex and 137Cs respectively. Additionally, 239+240Pu was the only radionuclide to meet the 'allowable error' threshold, demonstrating applicability to large scale studies in Western Kenya where the selection of suitable reference sites presents a significant challenge. The depth profile of 239+240Pu followed a polynomial function, with the maximum areal activities found between depths 3 and 12 cm, where thereafter areal activities decreased exponentially. As a result, 239+240Pu is presented as a robust tracer to evaluate soil erosion patterns and amounts in western Kenya, providing a powerful tool to inform and validate mitigation strategies with improved understanding of land degradation

Adoption of new health products in low and middle income settings: how product development partnerships can support country decision making

When a new health product becomes available, countries have a choice to adopt the product into their national health systems or to pursue an alternate strategy to address the public health problem. Here, we describe the role for product development partnerships (PDPs) in supporting this decision-making process. PDPs are focused on developing new products to respond to health problems prevalent in low and middle income settings. The impact of these products within public sector health systems can only be realized after a country policy process. PDPs may be the organizations most familiar with the evidence which assists decision making, and this generally translates into involvement in international policy development, but PDPs have limited reach into endemic countries. In a few individual countries, there may be more extensive involvement in tracking adoption activities and generating local evidence. This local PDP involvement begins with geographical prioritization based on disease burden, relationships established during clinical trials, PDP in-country resources, and other factors. Strategies adopted by PDPs to establish a presence in endemic countries vary from the opening of country offices to engagement of part-time consultants or with long-term or ad hoc committees. Once a PDP commits to support country decision making, the approaches vary, but include country consultations, regional meetings, formation of regional, product-specific committees, support of in-country advocates, development of decision-making frameworks, provision of technical assistance to aid therapeutic or diagnostic guideline revision, and conduct of stakeholder and Phase 4 studies. To reach large numbers of countries, the formation of partnerships, particularly with WHO, are essential. At this early stage, impact data are limited. But available evidence suggests PDPs can and do play an important catalytic role in their support of country decision making in a number of target countries

Dise?o y construcci?n de la habilitaci?n urbano industrial del Complejo Maderero de Pucallpa

El proyecto denominado ?Dise?o y construcci?n de la habilitaci?n urbano industrial del Complejo Maderero de Pucallpa, responde a atender la necesidad de contar con infraestructura para el uso de lotes industriales que impulsen la cadena de valor de la transformaci?n de la madera en la Regi?n Ucayali. Para el desarrollo del presente Proyecto se ha aplicado las buenas pr?cticas del PMBOOK 6ta. Edici?n, siendo el alcance del Proyecto desde la elaboraci?n de estudios previos, el desarrollo del dise?o de Habilitaci?n Urbana, la elaboraci?n del expediente t?cnico, gesti?n y tramitaci?n de certificados y licencia, hasta la procura y ejecuci?n de las obras de habilitaci?n urbana industrial que albergue 134 lotes industriales en 17 manzanas, distribuidos en 04 sectores, con cerco perimetral y p?rtico de ingreso, as? como la construcci?n de un edificio administrativo de dos pisos. EL plazo de ejecuci?n es de veintiocho (28) meses, con un monto de inversi?n de US 25,148,000, desarroll?ndose dentro de un terreno con un ?rea de 51 has, activo de propiedad del principal stakeholder la Asociaci?n de Madereros de Pucallpa. Cuenta con un plan de acci?n de mitigaci?n y reserva de contingencia, basado en la identificaci?n de los riesgos principales del proyecto

CUTTING PREFERENCE OF Acromyrmex crassispinus (FOREL, 1909) AND Acromyrmex ambiguus (EMERY, 1887) (HYMENOPTERA: FORMICIDAE) BY DIFFERENT EUCALYPT SPECIES IN LABORATORY

A busca por novos m\ue9todos de manejo e controle de formigas-cortadeiras vem sendo enfoque de in\ufameros estudos pelo pa\ueds, impulsionada por aspectos econ\uf4micos e ambientais. O estabelecimento de esp\ue9cies resistentes ou menos preferidas ao corte pode contribuir substancialmente neste sentido. Logo, o objetivo deste estudo foi avaliar a prefer\ueancia de corte entre as esp\ue9cies Corymbia citriodora , Eucalyptus benthamii , Eucalyptus camaldulensis , Eucalyptus dunnii , Eucalyptus globulus e h\uedbrido de Eucalyptus urophylla X Eucalyptus grandis por Acromyrmex ambiguus e Acromyrmex crassispinus em laborat\uf3rio. Para isso, folhas foram ofertadas, simultaneamente, para seis col\uf4nias de cada esp\ue9cie em bioensaios com chance de escolha. No entanto, nos testes sem chance de escolha, apenas as esp\ue9cies menos preferidas pelo teste anterior foram utilizadas. Para Acromyrmex crassispinus, as esp\ue9cies Eucalyptus camaldulensis e h\uedbrido de Eucalyptus urophylla X Eucalyptus grandis foram mais cortadas, enquanto que as esp\ue9cies Corymbia citriodora, Eucalyptus dunnii e Eucalyptus globulus foram menos preferidas ao corte. Acromyrmex ambiguus apresentou padr\ue3o similar de prefer\ueancia, adicionando-se Eucalyptus benthamii entre as mais preferidas e excluindo-se Eucalyptus dunnii das menos preferidas.The search for new leafcutter ant management and control methods have been the aim of several studies over the country, propelled by economic and environmental aspects. The establishment of resistant or less preferred species for the cut can contribute substantially in this subject. This way, the objective of this study was to evaluate the cutting preference between the species Corymbia citriodora , Eucalyptus benthamii , Eucalyptus camaldulensis , Eucalyptus dunnii , Eucalyptus globulus and h\uedbrido de Eucalyptus urophylla X Eucalyptus grandis by Acromyrmex ambiguus and Acromyrmex crassispinus in laboratory. Therefore, leafs were offered simultaneously to six colonies of each species in bioassays with chance to choose. However, in the tests without chance to choose, only the least preferred species in the previous test were utilized. For Acromyrmex crassispinus, the species Eucalyptus camaldulensis and h\uedbrido de Eucalyptus urophylla X Eucalyptus grandis were the most cutted, besides Corymbia citriodora, Eucalyptus dunni and Eucalyptus globules were less preferred. Acromyrmex ambiguus showed similar preference pattern, adding Eucalyptus benthamii among the most preferred one and excluding Eucalyptus dunnii from the least preferred

Evaluation of polygenic risk scores for breast and ovarian cancer risk prediction in BRCA1 and BRCA2 mutation carriers

Background: Genome-wide association studies (GWAS) have identified 94 common single-nucleotide polymorphisms (SNPs) associated with breast cancer (BC) risk and 18 associated with ovarian cancer (OC) risk. Several of these are also associated with risk of BC or OC for women who carry a pathogenic mutation in the high-risk BC and OC genes BRCA1 or BRCA2. The combined effects of these variants on BC or OC risk for BRCA1 and BRCA2 mutation carriers have not yet been assessed while their clinical management could benefit from improved personalized risk estimates. Methods: We constructed polygenic risk scores (PRS) using BC and OC susceptibility SNPs identified through population-based GWAS: for BC (overall, estrogen receptor [ER]-positive, and ER-negative) and for OC. Using data from 15 252 female BRCA1 and 8211 BRCA2 carriers, the association of each PRS with BC or OC risk was evaluated using a weighted cohort approach, with time to diagnosis as the outcome and estimation of the hazard ratios (HRs) per standard deviation increase in the PRS. Results: The PRS for ER-negative BC displayed the strongest association with BC risk in BRCA1 carriers (HR = 1.27, 95% confidence interval [CI] = 1.23 to 1.31, P = 8.2 x 10(53)). In BRCA2 carriers, the strongest association with BC risk was seen for the overall BC PRS (HR = 1.22, 95% CI = 1.17 to 1.28, P = 7.2 x 10(-20)). The OC PRS was strongly associated with OC risk for both BRCA1 and BRCA2 carriers. These translate to differences in absolute risks (more than 10% in each case) between the top and bottom deciles of the PRS distribution; for example, the OC risk was 6% by age 80 years for BRCA2 carriers at the 10th percentile of the OC PRS compared with 19% risk for those at the 90th percentile of PRS. Conclusions: BC and OC PRS are predictive of cancer risk in BRCA1 and BRCA2 carriers. Incorporation of the PRS into risk prediction models has promise to better inform decisions on cancer risk management

Molecular pedomorphism underlies craniofacial skeletal evolution in Antarctic notothenioid fishes

Background Pedomorphism is the retention of ancestrally juvenile traits by adults in a descendant taxon. Despite its importance for evolutionary change, there are few examples of a molecular basis for this phenomenon. Notothenioids represent one of the best described species flocks among marine fishes, but their diversity is currently threatened by the rapidly changing Antarctic climate. Notothenioid evolutionary history is characterized by parallel radiations from a benthic ancestor to pelagic predators, which was accompanied by the appearance of several pedomorphic traits, including the reduction of skeletal mineralization that resulted in increased buoyancy. Results We compared craniofacial skeletal development in two pelagic notothenioids, Chaenocephalus aceratus and Pleuragramma antarcticum, to that in a benthic species, Notothenia coriiceps, and two outgroups, the threespine stickleback and the zebrafish. Relative to these other species, pelagic notothenioids exhibited a delay in pharyngeal bone development, which was associated with discrete heterochronic shifts in skeletal gene expression that were consistent with persistence of the chondrogenic program and a delay in the osteogenic program during larval development. Morphological analysis also revealed a bias toward the development of anterior and ventral elements of the notothenioid pharyngeal skeleton relative to dorsal and posterior elements. Conclusions Our data support the hypothesis that early shifts in the relative timing of craniofacial skeletal gene expression may have had a significant impact on the adaptive radiation of Antarctic notothenioids into pelagic habitats

Associations between COPD related manifestations:a cross-sectional study

Background: Cardiovascular disease, osteoporosis and emphysema are associated with COPD. Associations between these factors and whether they predict all-cause mortality in COPD patients are not well understood. Therefore, we examined associations between markers of cardiovascular disease (coronary artery calcification [CAC], thoracic aortic calcification [TAC] and arterial stiffness), bone density (bone attenuation of the thoracic vertebrae), emphysema (PI-950 and 15th percentile) and all-cause mortality in a COPD cohort. Methods: We assessed CAC, TAC, bone attenuation of the thoracic vertebrae, PI-950 and 15th percentile on low-dose chest computed tomography in COPD subjects. We measured arterial stiffness as carotid-radial pulse wave velocity (PWV), and identified deaths from the national register. Results: We studied 119 COPD subjects; aged 67.8 ±7.3, 66% were males and mean FEV1% predicted was 46.0 ±17.5. Subjects were classified into three pre-specificed groups: CAC = 0 (n = 14), 0 < CAC ≤ 400 (n = 41) and CAC > 400 (n = 64). Subjects with higher CAC were more likely to be older (p < 0.001) and male (p = 0.03), and more likely to have higher systolic blood pressure (p = 0.001) and a history of hypertension (p = 0.002) or ischemic heart disease (p = 0.003). Higher CAC was associated with higher PWV (OR 1.62, p = 0.04) and lower bone attenuation (OR 0.32, p = 0.02), but not with 15th percentile, after adjustment for age, sex and pack-years of smoking. In a Cox proportional hazards model, CAC, TAC and 15th percentile predicted all-cause mortality (HR 2.01, 2.09 and 0.66, respectively). Conclusions: Increased CAC was associated with increased arterial stiffness and lower bone density in a COPD cohort. In addition, CAC, TAC and extent of emphysema predicted all-cause mortality

Nano Random Forests to mine protein complexes and their relationships in quantitative proteomics data

Ever-increasing numbers of quantitative proteomics data sets constitute an underexploited resource for investigating protein function. Multiprotein complexes often follow consistent trends in these experiments, which could provide insights about their biology. Yet, as more experiments are considered, a complex’s signature may become conditional and less identifiable. Previously we successfully distinguished the general proteomic signature of genuine chromosomal proteins from hitchhikers using the Random Forests (RF) machine learning algorithm. Here we test whether small protein complexes can define distinguishable signatures of their own, despite the assumption that machine learning needs large training sets. We show, with simulated and real proteomics data, that RF can detect small protein complexes and relationships between them. We identify several complexes in quantitative proteomics results of wild-type and knockout mitotic chromosomes. Other proteins covary strongly with these complexes, suggesting novel functional links for later study. Integrating the RF analysis for several complexes reveals known interdependences among kinetochore subunits and a novel dependence between the inner kinetochore and condensin. Ribosomal proteins, although identified, remained independent of kinetochore subcomplexes. Together these results show that this complex-oriented RF (NanoRF) approach can integrate proteomics data to uncover subtle protein relationships. Our NanoRF pipeline is available online