Dissolved oxygen dynamics during a phytoplankton bloom in the Ross Sea polynya

The Ross Sea polynya is one of the most productive regions in the Southern Ocean. However, limited access and high spatio-temporal variability of physical and biological processes limit the use of conventional oceanographic methods to measure early season primary productivity. High-resolution observations from two Seagliders provide insights into the timing of a bloom in the southern Ross Sea polynya in December 2010. Changes in chlorophyll and oxygen concentrations are used to assess bloom dynamics. Using a ratio of dissolved oxygen to carbon, net primary production is estimated over the duration of the bloom showing a sensitive balance between net autotrophy and heterotrophy. The two gliders, observing spatially distinct regions during the same period, found net community production rates of -0.9±0.7 and 0.7±0.4 g C m-2 d-1. The difference highlights the spatial variability of biological processes and is probably caused by observing different stages of the bloom. The challenge of obtaining accurate primary productivity estimates highlights the need for increased observational efforts, particularly focusing on subsurface processes not resolved using surface or remote observations. Without an increased observational effort and the involvement of emerging technologies, it will not be possible to determine the seasonal trophic balance of the Ross Sea polynya and quantify the shelf's importance in carbon export

Accessible Chemical Space for Metal Nitride Perovskites

Building on the extensive exploration of metal oxide and metal halide perovskites, metal nitride perovskites represent a largely unexplored class of materials. We report a multi-tier computational screening of this chemical space. From a pool of 3660 ABN$_3$ compositions covering I-VIII, II-VII, III-VI and IV-V oxidation state combinations, 279 are predicted to be chemically feasible. The ground-state structures of the 25 most promising candidate compositions were explored through enumeration over octahedral tilt systems and global optimisation. We predict 12 dynamically and thermodynamically stable nitride perovskite materials, including YMoN$_3$, YWN$_3$, ZrTaN$_3$, and LaMoN$_3$. These feature significant electric polarisation and low predicted switching electric field, showing similarities with metal oxide perovskites and making them attractive for ferroelectric memory device

Accessible chemical space for metal nitride perovskites

Building on the extensive exploration of metal oxide and metal halide perovskites, metal nitride perovskites represent a largely unexplored class of materials. We report a multi-tier computational screening of this chemical space. From a pool of 3660 ABN3 compositions covering I–VIII, II–VII, III–VI and IV–V oxidation state combinations, 279 are predicted to be chemically feasible. The ground-state structures of the 25 most promising candidate compositions were explored through enumeration over octahedral tilt systems and global optimisation. We predict 12 dynamically and thermodynamically stable nitride perovskite materials, including YMoN3, YWN3, ZrTaN3, and LaMoN3. These feature significant electric polarisation and low predicted switching electric field, showing similarities with metal oxide perovskites and making them attractive for ferroelectric memory devices

A two-dimensional population balance model for cell growth including multiple uptake systems

Cell growth in a chemostat is a well-documented research topic. How cells uptake the avail-able substrate to gain weight and engage cell division is not generally taken into account inthe modelling bioreactors. In fact, the growth rate is related to a population doubling timewhereas the microorganisms’ growth in mass is due to the mass transfer of substrates fromthe liquid phase to the biotic phase. Clearly, growth in mass precedes growth in number.Similarly, the transport of substrates down to the cell scale precedes the mass transfer. Thisarticle’s main feature is a two-dimensional population balance model that allows to uncou-ple growth in mass and growth in number when the equilibrium between a cell populationand its environment is disrupted. The cell length and the rate of anabolism are chosen asinternal variables. It is proved that the hypothesis “growth in number = growth in mass” isvalid at steady-state or in exponential growth only. The glucose uptake is assumed drivenby two transport systems with a different affinity constant for the substrate. This combina-tion of two regulated uptake systems operating in parallel explains a 3-fold increase in theuptake following a glucose pulse, but can also predict substrate uptake rates higher thanthe maximal batch value as observed in some experiments. These features are obtainedby considering carbon fluxes in the formulation of regulation principles for uptake dynam-ics. The population balance’s implementation in a multi-compartment reactor is a naturalprospective work and allows extensions to industrial processes

Genetic Competence Drives Genome Diversity in Bacillus subtilis

This deposit is composed by the main article plus the supplementary materials of the publication.Prokaryote genomes are the result of a dynamic flux of genes, with increases achieved via horizontal gene transfer and reductions occurring through gene loss. The ecological and selective forces that drive this genomic flexibility vary across species. Bacillus subtilis is a naturally competent bacterium that occupies various environments, including plant-associated, soil, and marine niches, and the gut of both invertebrates and vertebrates. Here, we quantify the genomic diversity of B. subtilis and infer the genome dynamics that explain the high genetic and phenotypic diversity observed. Phylogenomic and comparative genomic analyses of 42 B. subtilis genomes uncover a remarkable genome diversity that translates into a core genome of 1,659 genes and an asymptotic pangenome growth rate of 57 new genes per new genome added. This diversity is due to a large proportion of low-frequency genes that are acquired from closely related species. We find no gene-loss bias among wild isolates, which explains why the cloud genome, 43% of the species pangenome, represents only a small proportion of each genome. We show that B. subtilis can acquire xenologous copies of core genes that propagate laterally among strains within a niche. While not excluding the contributions of other mechanisms, our results strongly suggest a process of gene acquisition that is largely driven by competence, where the long-term maintenance of acquired genes depends on local and global fitness effects. This competence-driven genomic diversity provides B. subtilis with its generalist character, enabling it to occupy a wide range of ecological niches and cycle through them.Fundação para a Ciência e a Tecnologia grants: (PTDC/EBB-BIO/119006/2010, PEst-OE/EQB/LA0004/2011, SFRH/BPD/89907/2012, SFRH/BD/29397/06); FEDER grant: (LISBOA-01-0145-FEDER-007660).info:eu-repo/semantics/publishedVersio

Neon and Helium in the Surface of Stardust Cell C2028

Previous studies of light noble gases in Stardust aerogel samples detected a variety of isotopically non-terrestrial He and Ne compositions. However, with one exception, in none of these samples was there visible evidence for the presence of particles that could have hosted the gases. The exception is materials keystoned from track 41, cell C2044, which contained observable fragments of the impacting Wild 2 comet coma grain. Here we report noble gas data from a second aerogel sample in which grains are observed, cut from the surface of a cell (C2028) riddled with tiny tracks and particles that are thought to be secondary in origin, ejected toward the cell when a parent grain collided with the spacecraft structure and fragmented. Interestingly, measured 20Ne/22Ne ratios in the track 41 and C2028 samples are similar, and within error of the meteoritic "Q-phase" Ne composition

Robust Light Driven Enzymatic Oxyfunctionalization via Immobilization of Unspecific Peroxygenase

Unspecific peroxygenases have attracted interest in synthetic chemistry, especially for the oxidative activation of C−H bonds, as they only require hydrogen peroxide (H2O2) instead of a cofactor. Due to their instability in even small amounts of H2O2, different strategies like enzyme immobilization or in situ H2O2 production have been developed to improve the stability of these enzymes. While most strategies have been studied separately, a combination of photocatalysis with immobilized enzymes was only recently reported. To show the advantages and limiting factors of immobilized enzyme in a photobiocatalytic reaction, a comparison is made between free and immobilized enzymes. Adjustment of critical parameters such as (i) enzyme and substrate concentration, (ii) illumination wavelength and (iii) light intensity results in significantly increased enzyme stabilities of the immobilized variant. Moreover, under optimized conditions a turnover number of 334,500 was reached