Improved Constraints on the Acceleration History of the Universe and the Properties of the Dark Energy

We extend and apply a model-independent analysis method developed earlier by Daly & Djorgovski to new samples of supernova standard candles, radio galaxy and cluster standard rulers, and use it to constrain physical properties of the dark energy as functions of redshift. Similar results are obtained for the radio galaxy and supernova data sets. The first and second derivatives of the distance are compared directly with predictions in a standard model based on General Relativity. The good agreement indicates that General Relativity provides an accurate description of the data on look-back time scales of about ten billion years. The first and second derivatives are combined to obtain the acceleration parameter, assuming only the validity of the Robertson-Walker metric, independent of a theory of gravity and of the physical nature of the dark energy. The acceleration of the universe at the current epoch is indicated by the analysis. The effect of non-zero space curvature on q(z) is explored. We solve for the pressure, energy density, equation of state, and potential and kinetic energy of the dark energy as functions of redshift assuming that General Relativity is the correct theory of gravity, and the results indicate that a cosmological constant in a spatially flat universe provides a good description of each of these quantities over the redshift range from zero to about one. We define a new function, the dark energy indicator, in terms of the first and second derivatives of the coordinate distance and show how this can be used to measure deviations of w from -1 and to obtain a new and independent measure of Omega.Comment: 46 pages, submitted for publicatio

Chasing the rainbow: pleasure, sex-based sociality and consumerism in navigating and exiting the Irish Chemsex scene

Club drug use among gay, bisexual and other men who have sex with men is increasingly normalised within sexual contexts and is associated with increased sexual risk behaviours. The term Chemsex is used to describe sexualised drug use lasting several hours or days with multiple sexual partners. A small pilot study, underpinned by interpretative phenomenological analysis (IPA), was conducted in Dublin, Ireland. Interviews were conducted with 10 men who were experiencing physical and emotional health problems as a consequence of their participation in sexualised drug use and wished to exit the Chemsex scene. Interviews explored experiences of sexualised drug use, motives to partake, the organisation of Chemsex parties and group connectivity, drugs used, harm reduction, pleasure and consequences of participation over time. Four basic themes emerged from the analysis: social and cyber arrangements within the Dublin Chemsex scene; poly drug use and experiences of drug dependence; drug and sexual harm reduction within the Chemsex circle of novices and experts; and sexualised drug use, escapism and compulsive participation. Two higher-order themes were also apparent: first, the reinforcing aspects of drug and sexual pleasure; and second, the interplay between excess drug consumption and sex, and drug dependence. © 2018, © 2018 Informa UK Limited, trading as Taylor & Francis Group

Evaluating coverage bias in next-generation sequencing of Escherichia coli

Whole-genome sequencing is essential to many facets of infectious disease research. However, technical limitations such as bias in coverage and tagmentation, and difficulties characterising genomic regions with extreme GC content have created significant obstacles in its use. Illumina has claimed that the recently released DNA Prep library preparation kit, formerly known as Nextera Flex, overcomes some of these limitations. This study aimed to assess bias in coverage, tagmentation, GC content, average fragment size distribution, and de novo assembly quality using both the Nextera XT and DNA Prep kits from Illumina. When performing whole-genome sequencing on Escherichia coli and where coverage bias is the main concern, the DNA Prep kit may provide higher quality results; though de novo assembly quality, tagmentation bias and GC content related bias are unlikely to improve. Based on these results, laboratories with existing workflows based on Nextera XT would see minor benefits in transitioning to the DNA Prep kit if they were primarily studying organisms with neutral GC content

High-resolution images of five radio quasars at early cosmological epochs

Context: Until now, there have only been seven quasars at z>4.5 whose the high-resolution radio structure had been studied in detail with Very Long Baseline Interferometry (VLBI) imaging. Aims: We almost double the number of VLBI-imaged quasars at these high redshifts with the aim of studying their redshift-dependent structural and physical properties in a larger sample. Methods: We observed five radio quasars (J0813+3508, J1146+4037, J1242+5422, J1611+0844, and J1659+2101) at 4.5<z<5 with the European VLBI Network (EVN) at 1.6 GHz on 29 October 2008 and at 5 GHz on 22 October 2008. The angular resolution achieved ranges from 1.5 to 25 milli-arcseconds (mas), depending on the observing frequency, the position angle in the sky, and the source's celestial position. Results: The sources are all somewhat extended on mas scales, but compact enough to be detected at both frequencies. With one exception of a flat-spectrum source (J1611+0844), their compact emission is characterised by a steep radio spectrum. We found no evidence of Doppler-boosted radio emission in the quasars in our sample. The radio structure of one of them (J0813+3508) is extended to ~7", which corresponds to 43 kpc projected linear size. Many of the highest redshift compact radio sources are likely to be young, evolving objects, far-away cousins of the powerful gigahertz peaked-spectrum (GPS) and compact steep-spectrum (CSS) sources that populate the Universe at lower redshifts.Comment: 7 pages, 2 figures, accepted for Astronomy & Astrophysic

Increased extent of waterfowl grazing lengthens the recovery time of a colonizing seagrass (Halophila ovalis) with implications for seagrass resilience

Herbivore distributions and abundance are shifting because of climate change, leading to intensified grazing pressure on foundation species such as seagrasses. This, combined with rapidly increasing magnitudes of change in estuarine ecosystems, may affect seagrass resilience. While the overall resilience of seagrasses is generally well-studied, the timeframes of recovery has received comparatively little attention, particularly in temperate estuaries. We investigated how the recovery time (RT) of seagrass is affected by simulated grazing in a southwestern Australian estuary. Whilst excluding swans, we simulated different grazing intensities (25, 50, 75, and 100 % removal from 1 m2 plots) at four locations in the Swan-Canning Estuary, Western Australia during summer and tracked the recovery of seagrass over 3 months, using seagrass cover as the main measure of recovery. We found that seagrass recovered within 4–6 weeks from the lower grazing intensities (25 and 50 %) and 7–19 weeks from the higher grazing intensities (75 and 100 %) across the estuary. Increased grazing intensity led to not only longer recovery times (RTs), but also greater variability in the RT among experimental locations. The RT from the higher grazing intensities at one location in particular was more than double other locations. Seagrass recovery was through vegetative mechanisms and not through sexual reproduction. There was a significant grazing treatment effect on seagrass meadow characteristics, particularly belowground biomass which had not recovered 3 months following grazing. As the pressure of climate change on estuarine environments increases, these quantified RTs for seagrass provide a baseline for understanding grazing pressure as a singular disturbance. Future work can now examine how grazing and other potentially interacting pressures in our changing climate could impact seagrass recovery even further

Japanese encephalitis in Bali, Indonesia: Ecological and socio-cultural perspectives

The increasing number of cases of acute encephalitis syndrome, a key presenting clinical sign of Japanese encephalitis infection in humans, along with increasing laboratory confirmed cases in Bali over recent years have led to the Indonesian government developing a national program of vaccination against Japanese encephalitis virus. In order to inform multidisciplinary management, a review was conducted to assess Japanese encephalitis virus-related cases in humans and animals including their determinants and detection in vectors. Along with published literature, key data from local authorized officers in Bali have been used to convey the recent situation of the disease. Related surveys detected up to 92% of the local children had antibodies against the virus with the annual incidence estimated to be 7.1 per 100,000 children. Additionally, reports on young and adult cases of infection within international travellers infected in Bali were documented with both non-fatal and fatal outcomes. Further seroprevalence surveys detected up to 90% with antibodies to the virus in animal reservoirs. The detection of the virus in certain Culex mosquito species and high levels of seropositivity may be associated with greater risk of the virus transmission to the human population. It was also highlighted that local sociocultural practices for agriculture and livestock were potentially associated with the high density of the vector and the reservoirs, which then may lead to the risk of the disease transmission in the ecology of Bali

Tracing Ghost Cavities with Low Frequency Radio Observations

We present X-ray and multi-frequency radio observations of the central radio sources in several X-ray cavity systems. We show that targeted radio observations are key to determining if the lobes are being actively fed by the central AGN. Low frequency observations provide a unique way to study both the lifecycle of the central radio source as well as its energy input into the ICM over several outburst episodes.Comment: 6 pages, 4 figures, To appear in the Proceedings of "Heating vs. Cooling in Galaxies and Clusters of Galaxies", eds. H. Boehringer, P. Schuecker, G. W. Pratt & A. Finoguenov (ESO Astrophysics Symposia, Springer-Verlag), Garching (Germany), August 200

Optically Faint Radio Sources: Reborn AGN?

We have discovered a number of relatively strong radio sources in the field-of-view of SDSS galaxy clusters which present no optical counterparts down to the magnitude limits of the SDSS. The optically faint radio sources appear as double-lobed or core-jet objects on the FIRST radio images and have projected angular sizes ranging from 0.5 to 1.0 arcmin. We have followed-up these sources with near-infrared imaging using the wide-field imager HAWK-I on the VLT. K_s-band emitting regions, about 1.5 arcsec in size and coincident with the centers of the radio structures, were detected in all the sources, with magnitudes in the range 17-20 mag. We have used spectral modelling to characterize the sample sources. In general, the radio properties are similar to those observed in 3CRR sources but the optical-radio slopes are consistent with moderate to high redshift (z<4) gigahertz-peaked spectrum sources. Our results suggest that these unusual objects are galaxies whose black hole has been recently re-ignited but retain large-scale radio structures, signatures of previous AGN activity.Comment: Accepted for publication in A&

Organoids and bioengineered intestinal models: Potential solutions to the Cryptosporidium culturing dilemma

Cryptosporidium is a major cause of severe diarrhea-related disease in children in developing countries, but currently no vaccine or effective treatment exists for those who are most at risk of serious illness. This is partly due to the lack of in vitro culturing methods that are able to support the entire Cryptosporidium life cycle, which has led to research in Cryptosporidium biology lagging behind other protozoan parasites. In vivo models such as gnotobiotic piglets are complex, and standard in vitro culturing methods in transformed cell lines, such as HCT-8 cells, have not been able to fully support fertilization occurring in vitro. Additionally, the Cryptosporidium life cycle has also been reported to occur in the absence of host cells. Recently developed bioengineered intestinal models, however, have shown more promising results and are able to reproduce a whole cycle of infectivity in one model system. This review evaluates the recent advances in Cryptosporidium culturing techniques and proposes future directions for research that may build upon these successes