National assessment of threatened species using sparse data: IUCN Red List classification of Anatidae in Iran

Classifying the status of threatened species using tools such as the IUCN Red List is a critical step for identifying at-risk species, and for conservation planning at global and sub-global levels. The requirement for data on population trends, geographic ranges and population sizes has proved challenging to carry out at the national level, especially in countries with unstructured and spatially limited monitoring schemes and limited conservation resources. In this study, we investigated the repeatability of risk assessments made under the IUCN Red List guidelines for assessment at the national level. Specifically, we assessed the national threat status of breeding and non-breeding populations of Anatidae in Iran using population and distribution data. The variable quality of these data led to uncertainties in decision-making. To evaluate the impact of these uncertainties on population trend estimates, we generated a range of alternative possible threat categories under three scenarios of population trend estimation. For the non-breeding populations, for which long-term population data were available, we were able to classify 93% of species, 72% of which were placed in threatened categories. For the breeding populations, 78% of the species were categorized as Data Deficient. Of those species in data-sufficient categories, 67% were classified as threatened. We conclude that effective use of the IUCN categories and criteria at the national level is hampered in situations where monitoring schemes have a short history. Therefore, available data need to be complemented with some level of standardized data collection. We further make suggestions about efficient means of data collection in such cases and the importance of the use of modeling techniques prior to Red Listing and discuss the most useful IUCN criteria for threat categorization in such circumstances

Extension as a Multilevel Bridging Organization: Supporting Networked Environmental Governance

Governmental and nongovernmental actors at different spatial and jurisdictional levels have information that can benefit natural resources management; however, barriers in communication and organizational culture often prevent information sharing and joint endeavors. Bridging entities, such as task forces or working groups, bring together potential stakeholders to pool expertise and stimulate shared learning. Using a network survey, interview data, and meeting minutes, we constructed a case study of task forces convened to stimulate management of the emerald ash borer, an invasive wood-boring beetle. We found that coordinated action among university and county Extension catalyzed bridging through visionary program design and network positioning

An assessment of threats to Anatidae in Iran

The network of wetland systems in Iran provides valuable staging and wintering areas for waterbirds in the African-Western Eurasian flyways. The West Siberian/Caspian/Nile populations of Anatidae (ducks, geese and swans) regularly overwinter and stop over in Iran, and are considered an economically and culturally important group of birds in the country. Conservation of such migratory birds requires the identification of key threat factors impacting them throughout the flyway. Since documented data on the status and threats facing Anatidae in Iran are very scarce, in this paper, we attempted to determine the general population trends for the 26 Anatidae species in Iran, using annual waterbird census data, and to identify and score the most important threat factors affecting each species, by consulting the top ornithologists and professional birdwatchers in the country by means of a survey. Our results indicate that the most prevalent threats affecting all 26 species are dam construction, water management practices, and hunting. Our results provide the necessary material for Red List assessment of these species at the national level, an important tool for conservation priority setting within Iran and in the flyway

The interplay of wind and uplift facilitates over-water flight in facultative soaring birds.

Flying over the open sea is energetically costly for terrestrial birds. Despite this, over-water journeys of many birds, sometimes hundreds of kilometres long, are uncovered by bio-logging technology. To understand how these birds afford their flights over the open sea, we investigated the role of atmospheric conditions, specifically wind and uplift, in subsidizing over-water flight at a global scale. We first established that ΔT, the temperature difference between sea surface and air, is a meaningful proxy for uplift over water. Using this proxy, we showed that the spatio-temporal patterns of sea-crossing in terrestrial migratory birds are associated with favourable uplift conditions. We then analysed route selection over the open sea for five facultative soaring species, representative of all major migratory flyways. The birds maximized wind support when selecting their sea-crossing routes and selected greater uplift when suitable wind support was available. They also preferred routes with low long-term uncertainty in wind conditions. Our findings suggest that, in addition to wind, uplift may play a key role in the energy seascape for bird migration that in turn determines strategies and associated costs for birds crossing ecological barriers such as the open sea

Models of HoTT and the Constructive View of Theories

Homotopy Type theory and its Model theory provide a novel formal semantic framework for representing scientific theories. This framework supports a constructive view of theories according to which a theory is essentially characterised by its methods. The constructive view of theories was earlier defended by Ernest Nagel and a number of other philosophers of the past but available logical means did not allow these people to build formal representational frameworks that implement this view

Loss of expression of TGF-βs and their receptors in chronic skin lesions induced by sulfur mustard as compared with chronic contact dermatitis patients

<p>Abstract</p> <p>Background</p> <p>Sulfur mustard (SM) is a blister-forming agent that has been used as a chemical weapon. Sulfur mustard can cause damage in various organs, especially the skin, respiratory system, and eyes. Generally, the multiple complications of mustard gas result from its alkalizing potency; it reacts with cellular components like DNA, RNA, proteins, and lipid membranes.</p> <p>TGF-β is a multi-functional cytokine with multiple biological effects ranging from cell differentiation and growth inhibition to extracellular matrix stimulation, immunosuppression, and immunomodulation. TGF-β has 3 isoforms (TGF-β 1, 2, 3) and its signaling is mediated by its receptors: R1, R2 and intracellular Smads molecules.</p> <p>TGF-β has been shown to have anti-inflammatory effects. TGF-βs and their receptors also have an important role in modulation of skin inflammation, proliferation of epidermal cells, and wound healing, and they have been implicated in different types of skin inflammatory disorders.</p> <p>Methods</p> <p>Seventeen exposed SM individuals (48.47 ± 9.3 years), 17 chronic dermatitis patients (46.52 ± 14.6 years), and 5 normal controls (44.00 ± 14.6 years) were enrolled in this study.</p> <p>Evaluation of TGF-βs and their receptors expressions was performed by semiquantitative RT-PCR. Only TGF1was analyzed immunohistochemically.</p> <p>Results</p> <p>Our results showed significant decreases in the expression percentages of TGF-β 1, 2 and R1, R2 in chemical victims in comparison with chronic dermatitis and normal subjects and significant decreases in the intensity of R1 and R2 expressions in chemical victims in comparison with chronic dermatitis and normal controls. (P value < 0.05)</p> <p>Conclusions</p> <p>TGF-βs and their receptors appear to have a noticeable role in chronic inflammatory skin lesions caused by sulfur mustard.</p

Occlusion of Regulatory Sequences by Promoter Nucleosomes In Vivo

Nucleosomes are believed to inhibit DNA binding by transcription factors. Theoretical attempts to understand the significance of nucleosomes in gene expression and regulation are based upon this assumption. However, nucleosomal inhibition of transcription factor binding to DNA is not complete. Rather, access to nucleosomal DNA depends on a number of factors, including the stereochemistry of transcription factor-DNA interaction, the in vivo kinetics of thermal fluctuations in nucleosome structure, and the intracellular concentration of the transcription factor. In vitro binding studies must therefore be complemented with in vivo measurements. The inducible PHO5 promoter of yeast has played a prominent role in this discussion. It bears two binding sites for the transcriptional activator Pho4, which at the repressed promoter are positioned within a nucleosome and in the linker region between two nucleosomes, respectively. Earlier studies suggested that the nucleosomal binding site is inaccessible to Pho4 binding in the absence of chromatin remodeling. However, this notion has been challenged by several recent reports. We therefore have reanalyzed transcription factor binding to the PHO5 promoter in vivo, using ‘chromatin endogenous cleavage’ (ChEC). Our results unambiguously demonstrate that nucleosomes effectively interfere with the binding of Pho4 and other critical transcription factors to regulatory sequences of the PHO5 promoter. Our data furthermore suggest that Pho4 recruits the TATA box binding protein to the PHO5 promoter

The Euchromatic and Heterochromatic Landscapes Are Shaped by Antagonizing Effects of Transcription on H2A.Z Deposition

A role for variant histone H2A.Z in gene expression is now well established but little is known about the mechanisms by which it operates. Using a combination of ChIP–chip, knockdown and expression profiling experiments, we show that upon gene induction, human H2A.Z associates with gene promoters and helps in recruiting the transcriptional machinery. Surprisingly, we also found that H2A.Z is randomly incorporated in the genome at low levels and that active transcription antagonizes this incorporation in transcribed regions. After cessation of transcription, random H2A.Z quickly reappears on genes, demonstrating that this incorporation utilizes an active mechanism. Within facultative heterochromatin, we observe a hyper accumulation of the variant histone, which might be due to the lack of transcription in these regions. These results show how chromatin structure and transcription can antagonize each other, therefore shaping chromatin and controlling gene expression