The Benefish consortium 24 month report WP6: productivity modelling of OWI's and welfare intervention measures

In order to accurately model all costs and benefits associated with welfare interventions for farmed fish it is necessary to establish how any welfare actions affect productivity. Productivity modelling within Benefish has been conducted in WP6. WP6 aimed to model relationships between welfare interventions, changes in OWI’s and measures of productivity. It did so focusing only on the effects which were biological in nature: economic costs and benefits attributed to changes in productivity are addressed in WP8

Analytic studies in the learning and memory of skilled performance second semi-annual report, oct. 1, 1964 - mar. 30, 1965

Analytic studies in learning and memory of skilled performanc

Management of plant health risks associated with processing of plant-based wastes: A review

The rise in international trade of plants and plant products has increased the risk of introduction and spread of plant pathogens and pests. In addition, new risks are arising from the implementation of more environmentally friendly methods of biodegradable waste disposal, such as composting and anaerobic digestion. As these disposal methods do not involve sterilisation, there is good evidence that certain plant pathogens and pests can survive these processes. The temperature/time profile of the disposal process is the most significant and easily defined factor in controlling plant pathogens and pests. In this review, the current evidence for temperature/time effects on plant pathogens and pests is summarised. The advantages and disadvantages of direct and indirect process validation for the verification of composting processes, to determine their efficacy in destroying plant pathogens and pests in biowaste, are discussed. The availability of detection technology and its appropriateness for assessing the survival of quarantine organisms is also reviewed

Social learning and information sharing: an evolutionary simulation model of foraging in Norway rats

Social learning is distinguished from innate behaviour and individual learning as a behavioural strategy. We investigate simple mechanisms for social learning in an evolutionary simulation of food-preference copying in Norway rats. These animals learn preferences by interacting with conspecifics, but, unexpectedly, they fail to learn aversions after interacting with a poisoned demonstrator. They also follow each other for food sites. Simulation results show that failure to discriminate between sick and healthy demonstrators may be due to food toxicity in foraging environments. A seemingly complex instance of social information transmission is explained through the action of simple behaviours in an appropriately structured environment

A Multivariate Moran Process with Lotka-Volterra Phenomenology

For a population with any given number of types, we construct a new multivariate Moran process with frequency-dependent selection and establish, analytically, a correspondence to equilibrium Lotka-Volterra phenomenology. This correspondence, on the one hand, allows us to infer the phenomenology of our Moran process based on much simpler Lokta-Volterra phenomenology, and on the other, allows us to study Lotka-Volterra dynamics within the finite populations of a Moran process. Applications to community ecology, population genetics, and evolutionary game theory are discussed.Comment: 5 pages, 2 figures, Supplemental Material appended, accepted to Physical Review Letter

Spatial patterns of tree yield explained by endogenous forces through a correspondence between the Ising model and ecology.

Spatial patterning of periodic dynamics is a dramatic and ubiquitous ecological phenomenon arising in systems ranging from diseases to plants to mammals. The degree to which spatial correlations in cyclic dynamics are the result of endogenous factors related to local dynamics vs. exogenous forcing has been one of the central questions in ecology for nearly a century. With the goal of obtaining a robust explanation for correlations over space and time in dynamics that would apply to many systems, we base our analysis on the Ising model of statistical physics, which provides a fundamental mechanism of spatial patterning. We show, using 5 y of data on over 6,500 trees in a pistachio orchard, that annual nut production, in different years, exhibits both large-scale synchrony and self-similar, power-law decaying correlations consistent with the Ising model near criticality. Our approach demonstrates the possibility that short-range interactions can lead to long-range correlations over space and time of cyclic dynamics even in the presence of large environmental variability. We propose that root grafting could be the common mechanism leading to positive short-range interactions that explains the ubiquity of masting, correlated seed production over space through time, by trees

Aquaculture for African smallholders

Small scale aquaculture, Integrated farming, Aquaculture systems, Appropriate technology, Malawi, Agribusiness,

Critical fluctuations of noisy period-doubling maps

We extend the theory of quasipotentials in dynamical systems by calculating, within a broad class of period-doubling maps, an exact potential for the critical fluctuations of pitchfork bifurcations in the weak noise limit. These far-from-equilibrium fluctuations are described by finite-size mean field theory, placing their static properties in the same universality class as the Ising model on a complete graph. We demonstrate that the effective system size of noisy period-doubling bifurcations exhibits universal scaling behavior along period-doubling routes to chaos.Comment: 11 pages, 5 figure

Inbreeding ratio and genetic relationships among strains of the Western clawed frog, Xenopus tropicalis

The Western clawed frog, Xenopus tropicalis, is a highly promising model amphibian, especially in developmental and physiological research, and as a tool for understanding disease. It was originally found in the West African rainforest belt, and was introduced to the research community in the 1990s. The major strains thus far known include the Nigerian and Ivory Coast strains. However, due to its short history as an experimental animal, the genetic relationship among the various strains has not yet been clarified, and establishment of inbred strains has not yet been achieved. Since 2003 the Institute for Amphibian Biology (IAB), Hiroshima University has maintained stocks of multiple X. tropicalis strains and conducted consecutive breeding as part of the National BioResource Project. In the present study we investigated the inbreeding ratio and genetic relationship of four inbred strains at IAB, as well as stocks from other institutions, using highly polymorphic microsatellite markers and mitochondrial haplotypes. Our results show successive reduction of heterozygosity in the genome of the IAB inbred strains. The Ivory Coast strains clearly differed from the Nigerian strains genetically, and three subgroups were identified within both the Nigerian and Ivory Coast strains. It is noteworthy that the Ivory Coast strains have an evolutionary divergent genetic background. Our results serve as a guide for the most effective use of X. tropicalis strains, and the long-term maintenance of multiple strains will contribute to further research efforts