Numerical Study of Collisional Effects on Spatial Ion-Wave Echoes

Collisional effects on the second-order spatial ion-wave echo are studied numerically. General agreement is obtained with the experimental results of Ikezi, Takahashi, and Nishikawa. A critical argument is raised against the validity of the small collision approximation

Systematic description and key to streptomyces isolants from Chile-Atacama Desert, Hawaii, and Oregon soils

Systematic description and key to Streptomycetes isolants from Chile-Atacama Desert, Hawaii, and Oregon soil

Systematic description and key to Streptomyces isolants from Chile, Mexico and Arizona desert soils Progress report

Streptomycetes isolants from Chile, Mexico, and Arizona desert soil

Estimation of the mean of a discrete parameter, covariance stationary, stochastic process in rotation sampling

Constrained optimization procedure for deriving linear estimator of population mean in rotation samplin

Determining physical properties of the cell cortex

Actin and myosin assemble into a thin layer of a highly dynamic network underneath the membrane of eukaryotic cells. This network generates the forces that drive cell and tissue-scale morphogenetic processes. The effective material properties of this active network determine large-scale deformations and other morphogenetic events. For example,the characteristic time of stress relaxation (the Maxwell time)in the actomyosin sets the time scale of large-scale deformation of the cortex. Similarly, the characteristic length of stress propagation (the hydrodynamic length) sets the length scale of slow deformations, and a large hydrodynamic length is a prerequisite for long-ranged cortical flows. Here we introduce a method to determine physical parameters of the actomyosin cortical layer (in vivo). For this we investigate the relaxation dynamics of the cortex in response to laser ablation in the one-cell-stage {\it C. elegans} embryo and in the gastrulating zebrafish embryo. These responses can be interpreted using a coarse grained physical description of the cortex in terms of a two dimensional thin film of an active viscoelastic gel. To determine the Maxwell time, the hydrodynamic length and the ratio of active stress and per-area friction, we evaluated the response to laser ablation in two different ways: by quantifying flow and density fields as a function of space and time, and by determining the time evolution of the shape of the ablated region. Importantly, both methods provide best fit physical parameters that are in close agreement with each other and that are similar to previous estimates in the two systems. We provide an accurate and robust means for measuring physical parameters of the actomyosin cortical layer.It can be useful for investigations of actomyosin mechanics at the cellular-scale, but also for providing insights in the active mechanics processes that govern tissue-scale morphogenesis.Comment: 17 pages, 4 figure

Systematic description and key to Streptomyces isolants from Chile, Arizona, and Antarctica desert soils

Identification of streptomycete isolants from Chile, Arizona, and Antarctic desert soil

Wang-Landau molecular dynamics technique to search for low-energy conformational space of proteins

Multicanonical molecular dynamics (MD) is a powerful technique for sampling conformations on rugged potential surfaces such as protein. However, it is notoriously difficult to estimate the multicanonical temperature effectively. Wang and Landau developed a convenient method for estimating the density of states based on a multicanonical Monte Carlo method. In their method, the density of states is calculated autonomously during a simulation. In this paper we develop a set of techniques to effectively apply the Wang-Landau method to MD simulations. In the multicanonical MD, the estimation of the derivative of the density of states is critical. In order to estimate it accurately, we devise two original improvements. First, the correction for the density of states is made smooth by using the Gaussian distribution obtained by a short canonical simulation. Second, an approximation is applied to the derivative, which is based on the Gaussian distribution and the multiple weighted histogram technique. A test of this method was performed with small polypeptides, Met-enkephalin and Trp-cage, and it is demonstrated that Wang-Landau MD is consistent with replica exchange MD but can sample much larger conformational space.Comment: 8 pages, 7 figures, accepted for publication in Physical Review

LAP3, a novel plant protein required for pollen development, is essential for proper exine formation

We isolated lap3-1 and lap3-2 mutants in ascreen for pollen that displays abnormal stigma binding.Unlike wild-type pollen, lap3-1 and lap3-2 pollen exine isthinner, weaker, and is missing some connections betweentheir roof-like tectum structures. We describe the mappingand identification of LAP3 as a novel gene that contains arepetitive motif found in b-propeller enzymes. Insertionmutations in LAP3 lead to male sterility. To investigatepossible roles for LAP3 in pollen development, we assayedthe metabolite profile of anther tissues containing developingpollen grains and found that the lap3-2 defect leadsto a broad range of metabolic changes. The largest changeswere seen in levels of a straight-chain hydrocarbon nonacosaneand in naringenin chalcone, an obligate compoundin the flavonoid biosynthesis pathway

Ion dynamics and acceleration in relativistic shocks

Ab-initio numerical study of collisionless shocks in electron-ion unmagnetized plasmas is performed with fully relativistic particle in cell simulations. The main properties of the shock are shown, focusing on the implications for particle acceleration. Results from previous works with a distinct numerical framework are recovered, including the shock structure and the overall acceleration features. Particle tracking is then used to analyze in detail the particle dynamics and the acceleration process. We observe an energy growth in time that can be reproduced by a Fermi-like mechanism with a reduced number of scatterings, in which the time between collisions increases as the particle gains energy, and the average acceleration efficiency is not ideal. The in depth analysis of the underlying physics is relevant to understand the generation of high energy cosmic rays, the impact on the astrophysical shock dynamics, and the consequent emission of radiation.Comment: 5 pages, 3 figure

Energy exchange during stimulated Raman scattering of a relativistic laser in a plasma

Energy exchange between pump and daughter waves during the stimulated Raman scattering process in a plasma is investigated, including the effect of a damping coefficient of electron-ion collision at different initial three-wave phases. To obey the energy and momentum conservations, the resonance conditions are satisfied at an optimal initial phase difference between the interacting waves. The amplitudes of the interacting waves exhibit behaviors such as a parametric oscillator. The variations in initial three-wave phase difference generate a phase mismatch, which enhances the rate of the amplitude variations of the interacting waves. The relativistic mass effect modifies the dispersion relations of the interacting waves, and consequently the energy exchange during the stimulated Raman scattering is affected. The collisional damping in the plasma is shown to have an important effect on the evolution of the interacting waves.open91