Comparative Genomics of 42 Arcanobacterium phocae Strains

For the last 13 years, the fur industry in Europe has suffered from epidemic spouts of a severe necrotizing pyoderma. It affects all species currently farmed for fur and causes animal welfare problems and significant losses to the farmers. The causative agent of this disease was identified as Arcanobacterium phocae. Previously, this bacterium has been isolated from seals and other marine mammals, apparently causing wound and lung infections. Attempts at antibiotic treatment have been unsuccessful and the current advice on preventing the disease is to cull all animals with clinical signs. This poses an urgent question regarding possible vaccine development, as well as the need for further understanding of the pathogenicity of this organism. This study compared the whole genomes of 42 A. phocae strains isolated from seals, blue foxes, finnraccoons, mink and otter. The sequences were created using the Illumina technology and annotations were done using the RAST pipeline. A phylogenetic analysis identified a clear separation between the seal strains and the fur-animal-derived isolates, but also indicated that the bacterium readily adapts to new environments and host species with reasonable diversity. A pan- and core-genome was created and analyzed for proteins. A further analysis identified several virulence factors as well as multiple putative and secreted proteins of special interest for vaccine development

Comparative Genomics of 42 Arcanobacterium phocae Strains

For the last 13 years, the fur industry in Europe has suffered from epidemic spouts of a severe necrotizing pyoderma. It affects all species currently farmed for fur and causes animal welfare problems and significant losses to the farmers. The causative agent of this disease was identified as Arcanobacterium phocae. Previously, this bacterium has been isolated from seals and other marine mammals, apparently causing wound and lung infections. Attempts at antibiotic treatment have been unsuccessful and the current advice on preventing the disease is to cull all animals with clinical signs. This poses an urgent question regarding possible vaccine development, as well as the need for further understanding of the pathogenicity of this organism. This study compared the whole genomes of 42 A. phocae strains isolated from seals, blue foxes, finnraccoons, mink and otter. The sequences were created using the Illumina technology and annotations were done using the RAST pipeline. A phylogenetic analysis identified a clear separation between the seal strains and the fur-animal-derived isolates, but also indicated that the bacterium readily adapts to new environments and host species with reasonable diversity. A pan- and core-genome was created and analyzed for proteins. A further analysis identified several virulence factors as well as multiple putative and secreted proteins of special interest for vaccine development

Drivers and barriers for bioenergy trade

There are several drivers responsible for the strong increase in biomass trade over the past decade: concerns regarding the effects of climate change remain unchanged, and policy targets for renewable energy for 2020 have so far remained (largely) intact despite the economic crisis. At the same time, the list of barriers potentially hampering the further growth is long and very heterogeneous. Import tariffs and anti-dumping measures have been the topic of dispute between the main producing and consuming regions of ethanol and biodiesel for the last decade, and also technical standards for biodiesel have been criticized, as they may put biodiesel made from soy and palm kernel oil at an disadvantage. For solid biomass, phytosanitary measures are one of the most important barriers preventing the trade of softwood wood chips for energy. Also health and safety issues related to transporting and storing solid biomass still need further attention. For bioenergy trade towards the EU to grow further, long-term investment security is required, a clear and stable sustainability framework has to be in place, and the legal and technical aspects of solid biomass have to be rapidly standardized. The current crisis is likely to influence the climate change business negatively in the short term, but under a stable regulatory framework, even if in short term profit is slow, companies with a long term vision would still find sustainable projects attractive enough to invest

A review of progress made with growing energy crops in EU economic appraisal of wheat and miscanthus in selected member states

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