Knotted Strange Attractors and Matrix Lorenz Systems

A generalization of the Lorenz equations is proposed where the variables take values in a Lie algebra. The finite dimensionality of the representation encodes the quantum fluctuations, while the non-linear nature of the equations can describe chaotic fluctuations. We identify a criterion, for the appearance of such non-linear terms. This depends on whether an invariant, symmetric tensor of the algebra can vanish or not. This proposal is studied in detail for the fundamental representation of $\mathfrak{u}(2)$. We find a knotted structure for the attractor, a bimodal distribution for the largest Lyapunov exponent and that the dynamics takes place within the Cartan subalgebra, that does not contain only the identity matrix, thereby can describe the quantum fluctuations.Comment: 10 pages Revtex, 3 figure

Chapman-Enskog expansion about nonequilibrium states: the sheared granular fluid

The Chapman-Enskog method of solution of kinetic equations, such as the Boltzmann equation, is based on an expansion in gradients of the deviations fo the hydrodynamic fields from a uniform reference state (e.g., local equilibrium). This paper presents an extension of the method so as to allow for expansions about \emph{arbitrary}, far-from equilibrium reference states. The primary result is a set of hydrodynamic equations for studying variations from the arbitrary reference state which, unlike the usual Navier-Stokes hydrodynamics, does not restrict the reference state in any way. The method is illustrated by application to a sheared granular gas which cannot be studied using the usual Navier-Stokes hydrodynamics.Comment: 23 pages, no figures. Submited to PRE Replaced to correct misc. errors Replaced to correct misc. errors, make notation more consistant, extend discussio

Oscillators and relaxation phenomena in Pleistocene climate theory

Ice sheets appeared in the northern hemisphere around 3 million years ago and glacial-interglacial cycles have paced Earth's climate since then. Superimposed on these long glacial cycles comes an intricate pattern of millennial and sub-millennial variability, including Dansgaard-Oeschger and Heinrich events. There are numerous theories about theses oscillations. Here, we review a number of them in order to draw a parallel between climatic concepts and dynamical system concepts, including, in particular, the relaxation oscillator, excitability, slow-fast dynamics and homoclinic orbits. Namely, almost all theories of ice ages reviewed here feature a phenomenon of synchronisation between internal climate dynamics and the astronomical forcing. However, these theories differ in their bifurcation structure and this has an effect on the way the ice age phenomenon could grow 3 million years ago. All theories on rapid events reviewed here rely on the concept of a limit cycle in the ocean circulation, which may be excited by changes in the surface freshwater surface balance. The article also reviews basic effects of stochastic fluctuations on these models, including the phenomenon of phase dispersion, shortening of the limit cycle and stochastic resonance. It concludes with a more personal statement about the potential for inference with simple stochastic dynamical systems in palaeoclimate science. Keywords: palaeoclimates, dynamical systems, limit cycle, ice ages, Dansgaard-Oeschger eventsComment: Published in the Transactions of the Philosophical Transactions of the Royal Society (Series A, Physical Mathematical and Engineering Sciences), as a contribution to the Proceedings of the workshop on Stochastic Methods in Climate Modelling, Newton Institute (23-27 August). Philosophical Transactions of the Royal Society (Series A, Physical Mathematical and Engineering Sciences), vol. 370, pp. xx-xx (2012); Source codes available on request to author and on http://www.uclouvain.be/ito

Ratio control in a cascade model of cell differentiation

We propose a kind of reaction-diffusion equations for cell differentiation, which exhibits the Turing instability. If the diffusivity of some variables is set to be infinity, we get coupled competitive reaction-diffusion equations with a global feedback term. The size ratio of each cell type is controlled by a system parameter in the model. Finally, we extend the model to a cascade model of cell differentiation. A hierarchical spatial structure appears as a result of the cell differentiation. The size ratio of each cell type is also controlled by the system parameter.Comment: 13 pages, 7 figure

Modes of Growth in Dynamic Systems

Regardless of a system's complexity or scale, its growth can be considered to be a spontaneous thermodynamic response to a local convergence of down-gradient material flows. Here it is shown how growth can be constrained to a few distinct modes that depend on the availability of material and energetic resources. These modes include a law of diminishing returns, logistic behavior and, if resources are expanding very rapidly, super-exponential growth. For a case where a system has a resolved sink as well as a source, growth and decay can be characterized in terms of a slightly modified form of the predator-prey equations commonly employed in ecology, where the perturbation formulation of these equations is equivalent to a damped simple harmonic oscillator. Thus, the framework presented here suggests a common theoretical under-pinning for emergent behaviors in the physical and life sciences. Specific examples are described for phenomena as seemingly dissimilar as the development of rain and the evolution of fish stocks.Comment: 16 pages, 6 figures, including appendi

Nonequilibrium stochastic processes: Time dependence of entropy flux and entropy production

Based on the Fokker-Planck and the entropy balance equations we have studied the relaxation of a dissipative dynamical system driven by external Ornstein-Uhlenbeck noise processes in absence and presence of nonequilibrium constraint in terms of the thermodynamically inspired quantities like entropy flux and entropy production. The interplay of nonequilibrium constraint, dissipation and noise reveals some interesting extremal nature in the time dependence of entropy flux and entropy production.Comment: RevTex, 17 pages, 9 figures. To appear in Phys. Rev.

Chiral Defect Fermions and the Layered Phase

Chiral defect fermions on the lattice in 4+1 dimensions are analyzed using mean field theory. The fermion propagator has a localized chiral mode in weak coupling but loses it when the coupling in the unphysical fifth direction becomes too large. A layered phase \`a la Fu-Nielsen appears where the theory is vector-like in every layer.Comment: 9 pages + postscript figure (We have correctly quoted the work of our reference 10 in the paper

Dynamical estimates of chaotic systems from Poincar\'e recurrences

We show that the probability distribution function that best fits the distribution of return times between two consecutive visits of a chaotic trajectory to finite size regions in phase space deviates from the exponential statistics by a small power-law term, a term that represents the deterministic manifestation of the dynamics, which can be easily experimentally detected and theoretically estimated. We also provide simpler and faster ways to calculate the positive Lyapunov exponents and the short-term correlation function by either realizing observations of higher probable returns or by calculating the eigenvalues of only one very especial unstable periodic orbit of low-period. Finally, we discuss how our approaches can be used to treat data coming from complex systems.Comment: subm. for publication. Accepted fpr publication in Chao

Magic number 7 ±\pm 2 in networks of threshold dynamics

Information processing by random feed-forward networks consisting of units with sigmoidal input-output response is studied by focusing on the dependence of its outputs on the number of parallel paths M. It is found that the system leads to a combination of on/off outputs when $M \lesssim 7$, while for $M \gtrsim 7$, chaotic dynamics arises, resulting in a continuous distribution of outputs. This universality of the critical number $M \sim 7$ is explained by combinatorial explosion, i.e., dominance of factorial over exponential increase. Relevance of the result to the psychological magic number $7 \pm 2$ is briefly discussed.Comment: 6 pages, 5 figure

Thermodynamics of Chemical Waves

Chemical waves constitute a known class of dissipative structures emerging in reaction-diffusion systems. They play a crucial role in biology, spreading information rapidly to synchronize and coordinate biological events. We develop a rigorous thermodynamic theory of reaction-diffusion systems to characterize chemical waves. Our main result is the definition of the proper thermodynamic potential of the local dynamics as a nonequilibrium free energy density and establishing its balance equation. This enables us to identify the dynamics of the free energy, of the dissipation, and of the work spent to sustain the wave propagation. Two prototypical classes of chemical waves are examined. From a thermodynamic perspective, the first is sustained by relaxation towards equilibrium and the second by nonconservative forces generated by chemostats. We analytically study step-like waves, called wavefronts, using the Fisher-Kolmogorov equation as representative of the first class and oscillating waves in the Brusselator model as representative of the second. Given the fundamental role of chemical waves as message carriers in biosystems, our thermodynamic theory constitutes an important step toward an understanding of information transfers and processing in biology.Comment: 12 pages, 2 figure