A Turn-On Fluorescence-Based Fibre Optic Sensor for the Detection of Mercury

The design, development, and evaluation of an optical fibre sensor for the detection of Hg2+ in aqueous media are discussed in detail in this paper. A novel fluorescent polymeric material for Hg2+ detection, based on a coumarin derivative (acting as the fluorophore) and an azathia crown ether moiety (acting as the mercury ion receptor), has been synthesized. The fluorophore was covalently immobilized onto the fibre surface by polymerisation using the ion imprinting technique and exhibited a significant increase in fluorescence intensity in response to Hg2+ via a photoinduced electron transfer (PET) mechanism. The sensor provided a response over a concentration range of 0–28 µM with an acceptable response rate of around 11 min and a recovery rate of around 30 min in a Tris-EDTA buffer solution. A detection limit of 0.15 µM was obtained with a possibility of improvement by changing the thickness of the polymer layer and using a more sensitive detector. High-quality performance is seen through a high selectivity for Hg2+ over other metal ions, excellent photo-stability and reversibility which was also demonstrated, making this type of sensor potentially well suited for in-situ monitoring of mercury in the environment

Sarcospan Regulates Cardiac Isoproterenol Response and Prevents Duchenne Muscular Dystrophy-Associated Cardiomyopathy.

BackgroundDuchenne muscular dystrophy is a fatal cardiac and skeletal muscle disease resulting from mutations in the dystrophin gene. We have previously demonstrated that a dystrophin-associated protein, sarcospan (SSPN), ameliorated Duchenne muscular dystrophy skeletal muscle degeneration by activating compensatory pathways that regulate muscle cell adhesion (laminin-binding) to the extracellular matrix. Conversely, loss of SSPN destabilized skeletal muscle adhesion, hampered muscle regeneration, and reduced force properties. Given the importance of SSPN to skeletal muscle, we investigated the consequences of SSPN ablation in cardiac muscle and determined whether overexpression of SSPN into mdx mice ameliorates cardiac disease symptoms associated with Duchenne muscular dystrophy cardiomyopathy.Methods and resultsSSPN-null mice exhibited cardiac enlargement, exacerbated cardiomyocyte hypertrophy, and increased fibrosis in response to β-adrenergic challenge (isoproterenol; 0.8 mg/day per 2 weeks). Biochemical analysis of SSPN-null cardiac muscle revealed reduced sarcolemma localization of many proteins with a known role in cardiomyopathy pathogenesis: dystrophin, the sarcoglycans (α-, δ-, and γ-subunits), and β1D integrin. Transgenic overexpression of SSPN in Duchenne muscular dystrophy mice (mdx(TG)) improved cardiomyofiber cell adhesion, sarcolemma integrity, cardiac functional parameters, as well as increased expression of compensatory transmembrane proteins that mediate attachment to the extracellular matrix.ConclusionsSSPN regulates sarcolemmal expression of laminin-binding complexes that are critical to cardiac muscle function and protects against transient and chronic injury, including inherited cardiomyopathy

Differentiable Physics-based Greenhouse Simulation

We present a differentiable greenhouse simulation model based on physical processes whose parameters can be obtained by training from real data. The physics-based simulation model is fully interpretable and is able to do state prediction for both climate and crop dynamics in the greenhouse over very a long time horizon. The model works by constructing a system of linear differential equations and solving them to obtain the next state. We propose a procedure to solve the differential equations, handle the problem of missing unobservable states in the data, and train the model efficiently. Our experiment shows the procedure is effective. The model improves significantly after training and can simulate a greenhouse that grows cucumbers accurately.Comment: Accepted at the Machine Learning and the Physical Sciences workshop, NeurIPS 2022. 7 pages, 2 figure

Optical Fiber-Based Heavy Metal Detection Using the Localized Surface Plasmon Resonance Technique

An innovative, reflection-based localized surface plasmon resonance (LSPR) fiber-optic sensor has been developed and demonstrated to detect the concentration of several heavy metal lead ions in an aqueous solution. By using a self-assembling technique, gold nanoparticles (Au NPs) have been immobilized on an optical fiber surface and functionalized with 1,1-Mercaptoundecanoic acid (MUA; HS(CH2)10CO2H) in order to make the fiber selective to each the important heavy metal ion, Pb2+ or Cd2+. The concentration of the heavy metal then can be determined from the link between binding rate and the shift of the LSPR resonance wavelength. The Pb2+ ion sensitivity of the sensor thus created has been determined to be 0.28 nm/mM, with a typical response time of 30 seconds. Importantly, the probe has been shown to be reversible through a simple process involving the use of Ethylenedinitrilotetraacetic acid (EDTA;(HO2CCH2)2NCH2 CH2N(CH2CO2H)2) chelator to remove the bound heavy metal ion

Optical fibre thermometry using ratiometric green emission of an upconverting nanoparticle- polydimethylsiloxane composite

The thermally coupled green band emission from excited Er 3+ ions has been used in the past to create optical thermometers, by doping the material in various types of media, particularly glasses. Glasses are known to be excellent hosts for Er 3+ ions: however, high temperatures (>900 K) are usually required for doping these ions into glasses and a non-linear temperature response is often produced. In this work, the frequently encountered drawbacks of glass-based temperature sensors have been addressed by developing a temperature sensor created at a lower temperature (543 K), by dip-coating chemically synthesized upconverting nanoparticles (UCNP-NaYF4:(18%) Yb 3+ , (2%) Er 3+) embedded in polydimethylsiloxane (PDMS) onto the tip of a 1000 μm optical fibre, to create the actual fibre probe. The sensor shows an excellent linear response (R 2 = 0.991) over a very useful temperature range of 295 K-473 K, with a sensitivity of 2.9 ×10-3 K-1 , a temperature resolution of ± 2.7 K and response time of ~ 5 seconds. Additionally, a probe was investigated 2 where a pure upconverting nanoparticle powder was coated on the tip of optical fibre and its spectral and temperature response was obtained (and cross compared with that of UCNP-PDMS composite). The results obtained from the probe development work show that the UCNP-PDMS-coated optical fibre temperature sensor developed offers a better alternative to more conventional Er 3+ doped glass-based temperature sensors, in terms of the thermal budget, the synthesis process and the ease of coating, creating as a result, a very linear device response

ISGylation drives basal breast tumour progression by promoting EGFR recycling and Akt signalling

ISG15 is an ubiquitin-like modifier that is associated with reduced survival rates in breast cancer patients. The mechanism by which ISG15 achieves this however remains elusive. We demonstrate that modification of Rab GDP-Dissociation Inhibitor Beta (GDI2) by ISG15 (ISGylation) alters endocytic recycling of the EGF receptor (EGFR) in non-interferon stimulated cells using CRISPR-knock out models for ISGylation. By regulating EGFR trafficking, ISGylation enhances EGFR recycling and sustains Akt-signalling. We further show that Akt signalling positively correlates with levels of ISG15 and its E2-ligase in basal breast cancer cohorts, confirming the link between ISGylation and Akt signalling in human tumours. Persistent and enhanced Akt activation explains the more aggressive tumour behaviour observed in human breast cancers. We show that ISGylation can act as a driver of tumour progression rather than merely being a bystander.</p

Elevated expression of long intergenic non-coding RNA HOTAIR in a basal-like variant of MCF-7 breast cancer cells

Epigenetic regulation of gene expression is critical to phenotypic maintenance and transition of human breast cancer cells. HOX antisense intergenic RNA (HOTAIR) is a long intergenic non-coding RNA that epigenetically represses gene expression via recruitment of enhancer of zeste homolog 2 (EZH2), a histone methyltransferase. Elevated expression of HOTAIR promotes progression of breast cancer. In the current study we examined the expression and function of HOTAIR in MCF-7-TNR cells, a derivative of the luminal-like breast cancer cell line MCF-7 that acquired resistance to TNF-α-induced cell death. The expression of HOTAIR, markers of the luminal-like and basal-like subtypes, and growth were compared between MCF-7 and MCF-7-TNR cells. These variables were further assessed upon inhibition of HOTAIR, EZH2, p38 MAPK, and SRC kinase in MCF-7-TNR cells. When compared with MCF-7 cells, MCF-7-TNR cells exhibited an increase in the expression of HOTAIR, which correlated with characteristics of a luminal-like to basal-like transition as evidenced by dysregulated gene expression and accelerated growth. MCF-7-TNR cells exhibited reduced suppressive histone H3 lysine27 trimethylation on the HOTAIR promoter. Inhibition of HOTAIR and EZH2 attenuated the luminal-like to basal-like transition in terms of gene expression and growth in MCF-7-TNR cells. Inhibition of p38 and SRC diminished HOTAIR expression and the basal-like phenotype in MCF-7-TNR cells. HOTAIR was robustly expressed in the native basal-like breast cancer cells and inhibition of HOTAIR reduced the basal-like gene expression and growth. Our findings suggest HOTAIR-mediated regulation of gene expression and growth associated with the basal-like phenotype of breast cancer cells

Real-time quantification of microRNAs by stem–loop RT–PCR

A novel microRNA (miRNA) quantification method has been developed using stem–loop RT followed by TaqMan PCR analysis. Stem–loop RT primers are better than conventional ones in terms of RT efficiency and specificity. TaqMan miRNA assays are specific for mature miRNAs and discriminate among related miRNAs that differ by as little as one nucleotide. Furthermore, they are not affected by genomic DNA contamination. Precise quantification is achieved routinely with as little as 25 pg of total RNA for most miRNAs. In fact, the high sensitivity, specificity and precision of this method allows for direct analysis of a single cell without nucleic acid purification. Like standard TaqMan gene expression assays, TaqMan miRNA assays exhibit a dynamic range of seven orders of magnitude. Quantification of five miRNAs in seven mouse tissues showed variation from less than 10 to more than 30 000 copies per cell. This method enables fast, accurate and sensitive miRNA expression profiling and can identify and monitor potential biomarkers specific to tissues or diseases. Stem–loop RT–PCR can be used for the quantification of other small RNA molecules such as short interfering RNAs (siRNAs). Furthermore, the concept of stem–loop RT primer design could be applied in small RNA cloning and multiplex assays for better specificity and efficiency

Correlation and high-resolution timing for Paleo-tethys Permian-Triassic boundary exposures in Vietnam and Slovenia using geochemical, geophysical and biostratigraphic data sets

Two Permian-Triassic boundary (PTB) successions, Lung Cam in Vietnam, and Lukač in Slovenia, have been sampled for high-resolution magnetic susceptibility, stable isotope and elemental chemistry, and biostratigraphic analyses. These successions are located on the eastern (Lung Cam section) and western margins (Lukač section) of the Paleo-Tethys Ocean during PTB time. Lung Cam, lying along the eastern margin of the Paleo-Tethys Ocean provides an excellent proxy for correlation back to the GSSP and out to other Paleo-Tethyan successions. This proxy is tested herein by correlating the Lung Cam section in Vietnam to the Lukač section in Slovenia, which was deposited along the western margin of the Paleo-Tethys Ocean during the PTB interval. It is shown herein that both the Lung Cam and Lukač sections can be correlated and exhibit similar characteristics through the PTB interval. 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