Purification, crystallization and preliminary X-ray crystallographic analysis of the archaeal phosphoglycerate mutase PH0037 from Pyrococcus horikoshii OT3

The archaeal phosphoglycerate mutase PH0037 from P. horikoshii OT3 has been crystallized in space group R32, with unit-cell parameters a = 155.62, c = 230.35 Å. A 2.2 Å resolution data was collected at SPring-8 beamline BL26B1

Purification, crystallization and preliminary X-ray diffraction studies of a putative UDP-N-acetyl-d-mannosamine dehydrogenase from Pyrococcus horikoshii OT3

A putative UDP-N-acetyl-d-mannosamine dehydrogenase from P. horikoshii OT3 has been crystallized in space group P21, with unit-cell parameters a = 80.28, b = 69.24, c = 83.10 Å, β = 114.4°. X-ray diffraction data have been collected to 1.80 Å resolution

Purification, crystallization and initial X-ray crystallographic analysis of the putative GTPase PH0525 from Pyrococcus horikoshii OT3

The putative GTPase PH0525 from P. horikoshii OT3 was crystallized using the microbatch method. Crystals were formed under two different conditions, providing two distinct crystal forms. Diffraction data from the two forms were measured to resolution limits of 2.30 and 2.40 Å and processed in space groups P21 and C2221, respectively

mu-phenoxide bridged mixed ligand Cu(II) complex: Synthesis, 3D supramolecular architecture, DFT, energy frameworks and antimicrobial studies

As an essential class of heterocyclic derivatives, 8-hydroxyquinoline(HQ) and 4,4,4-trifluoro-1-(2-thienyl)-1,3-butanedione (TFTB) have a broad range of pharmaceutical applications and they are found to be excellent precursors for metal complexes and crystal engineering. The novel mixed ligand Cu(II) complex Cu-2(C8H4O2SF3)(2)(C9H6NO)(2)] has been synthesized using a metal salt and the above ligands in a 1:1:1 M ratio and characterized by FT-IR, UV-visible, SEM and EDAX techniques. Single crystal X-ray structure analysis reveals a centrosymmetric dinuclear form of the Cu(II) complex, linked by the obtuse phenolate oxygen atom, and the central Cu(II) ion adopts a distorted square pyramidal coordination geometry. The Cu(II) complex exhibits various intermolecular interactions, leading to the construction of R-2(2) (16), R-2(2) (10) and R-2(2) (20) supramolecular synthons. The existence of intermolecular interactions is supported by Hirshfeld surface analysis and quantified by 2D fingerprint plots. In addition, the 3D topology of the molecular packing is visualized through energy frameworks, which reveal the predominance of dispersion energy over other interaction energies. DFT calculations have been performed for the mixed ligand Cu(II) complex to study the optimal geometry, related reactive parameters and the HOMO-LUMO energy gap (0.8232 eV). Further, the Cu(II) complex was evaluated against MRSA and showed an MIC value of 15 mu g/mL. A time-killing assay for the Cu(II) complex was performed to study the antimicrobial effect with respect to time. A molecular docking study revealed the binding affinity of the Cu(II) complex to penicillin-binding protein 2, with an excellent binding score of -8.0 kcal/mol. (C) 2020 Elsevier Ltd. All rights reserved

Crystallization and preliminary X-ray studies of SdiA from Escherichia coli

E. coli SdiA was overexpressed, purified and crystallized. The crystals belonged to the hexagonal space group P6122 or P6522 and diffracted to 2.7 Å resolution

Crystal structures of native and xylosaccharide-bound alkali thermostable xylanase from an alkalophilic Bacillus sp. NG-27: Structural insights into alkalophilicity and implications for adaptation to polyextreme conditions

Crystal structures are known for several glycosyl hydrolase family 10 (GH10) xylanases. However, none of them is from an alkalophilic organism that can grow in alkaline conditions. We have determined the crystal structures at 2.2 Å of a GH10 extracellular endoxylanase (BSX) from an alkalophilic Bacillus sp. NG-27, for the native and the complex enzyme with xylosaccharides. The industrially important enzyme is optimally active and stable at 343 K and at a pH of 8.4. Comparison of the structure of BSX with those of other thermostable GH10 xylanases optimally active at acidic or close to neutral pH showed that the solvent-exposed acidic amino acids, Asp and Glu, are markedly enhanced in BSX, while solvent-exposed Asn was noticeably depleted. The BSX crystal structure when compared with putative three-dimensional homology models of other extracellular alkalophilic GH10 xylanases from alkalophilic organisms suggests that a protein surface rich in acidic residues may be an important feature common to these alkali thermostable enzymes. A comparison of the surface features of BSX and of halophilic proteins allowed us to predict the activity of BSX at high salt concentrations, which we verified through experiments. This offered us important lessons in the polyextremophilicity of proteins, where understanding the structural features of a protein stable in one set of extreme conditions provided clues about the activity of the protein in other extreme conditions. The work brings to the fore the role of the nature and composition of solvent-exposed residues in the adaptation of enzymes to polyextreme conditions, as in BSX