Epigenomic Mapping Reveals Distinct B Cell Acute Lymphoblastic Leukemia Chromatin Architectures and Regulators

B cell lineage acute lymphoblastic leukemia (B-ALL) is composed of diverse molecular subtypes, and while transcriptional and DNA methylation profiling has been extensively examined, the chromatin landscape is not well characterized for many subtypes. We therefore mapped chromatin accessibility using ATAC-seq in primary B-ALL cells from 156 patients spanning ten molecular subtypes and present this dataset as a resource. Differential chromatin accessibility and transcription factor (TF) footprint profiling were employed and identified B-ALL cell of origin, TF-target gene interactions enriched in B-ALL, and key TFs associated with accessible chromatin sites preferentially active in B-ALL. We further identified over 20% of accessible chromatin sites exhibiting strong subtype enrichment and candidate TFs that maintain subtype-specific chromatin architectures. Over 9,000 genetic variants were uncovered, contributing to variability in chromatin accessibility among patient samples. Our data suggest that distinct chromatin architectures are driven by diverse TFs and inherited genetic variants that promote unique gene-regulatory networks

Alfalfa and flax sprouts supplementation enriches the content of bioactive compounds and lowers the cholesterol in hen egg

Abstract The effect of dietary supplementation with flax and alfalfa sprouts (40 g/d) on bioactive compounds and cholesterol contents of hen's egg was examined. Thirty White Leghorn hens, 26 weeks of age, were fed, for 66 days, three diets that included control (standard diet – C), standard diet + alfalfa sprouts (A), and standard diet + flax sprouts (F). Productive performance of hens was recorded daily. The cholesterol content of plasma and yolk, and the presence of bioactive compounds in the egg, were also analysed. Supplementation of flax and alfalfa sprouts reduced plasma and egg cholesterol probably due to the synergy between different compounds of the sprouts (polyunsaturated fatty acids - PUFAs, lignans, isoflavones and sterols). Eggs from A and F groups also had higher contents of n-3 PUFA, vitamins (α-tocopherol, α-, γ-tocotrienol, retinol), carotenes (β-carotene, lutein, zeaxanthin) and phytoestrogens (daidzein, equol, isolariciresinol) than eggs from the C group

DNA fingerprinting of water yam (Dioscorea alata) cultivars in Brazil based on microsatellite markers Diversidade genética de cultivares de inhame (Dioscorea alata) no Brasil utilizando microssatélites

This study aimed to fingerprint 36 water yam (Dioscorea alata) accessions using microsatellite markers. Ten accessions were collected in local markets from several municipalities in Brazil, eight were obtained from the 'Instituto Agronômico de Campinas' (IAC) germplasm collection and eighteen were collected directly from growers from São Paulo state. A total of nine microsatellite loci were used in the analysis. Loci revealed high polymorphism verified by elevated PIC values (0.57-0.77), and by high gene diversity and Shannon-Wiener indices (0.69 and 1.29 on average, respectively). The accessions were classified into two groups based on clustering analysis. One group contained mostly accessions from the IAC collection, including a commercial cultivar acquired in a market in the city of Cuiabá, Mato Grosso state. The second group was composed of most accessions, including those collected directly from growers and markets in São Paulo, a few accessions from the IAC collection, and an accession from Puerto Rico, named 'Florida', which is the most cultivated in Brazil. Several duplicates were identified in this study, including accessions obtained from two farmers in Mogi Guaçu and Mogi Mirim, São Paulo state. However, some of these accessions were allocated in different sub-groups, within this second group. Results suggested the hypothesis of different origins for accessions currently cultivated in Brazil. Similar accessions obtained from different municipalities revealed the commercialization of the same accessions at different locations.<br>Este estudo teve como objetivo a análise genética de 36 acessos de inhame (Dioscorea alata) utilizando marcadores microssatélites. Dez acessos foram coletados em mercados locais de vários municípios no Brasil, oito foram obtidos no banco de germoplasma do Instituto Agronômico de Campinas (IAC), e dezoito foram coletados diretamente com os agricultores no estado de São Paulo. Um total de nove locos de microssatélites foram utilizados para amplificação. Alto polimorfismo foi encontrado entre os locos, verificado pelos valores de PIC elevados (0,57-0,77) e altos índices de heterogosidade esperada e Shannon-Wiener (0,69 e 1,29 em média, respectivamente). Os acessos foram classificados em dois grupos pela análise de agrupamento. O primeiro grupo consiste principalmente de acessos obtidos da coleção do IAC, incluindo um acesso comercial obtido num mercado na cidade de Cuiabá, estado de Mato Grosso. O segundo grupo classificou os acessos coletados diretamente dos agricultores, incluindo um importante acesso proveniente de Porto Rico, denominado 'Florida', a cultivar mais plantada no Brasil. Este grupo incluiu também os acessos obtidos em mercados de vários municípios do estado de São Paulo, além de outros acessos da coleção do IAC. Várias duplicatas foram identificadas neste estudo, incluindo acessos obtidos junto aos dois agricultores de Mogi Guaçu e Mogi Mirim, em São Paulo. Entretanto, parte desses acessos foi alocada em diferentes sub-grupos, dentro do segundo grupo. Os resultados sugerem a hipótese de diferentes origens para os acessos atualmente comercializados e cultivados no Brasil. Acessos similares obtidos de diferentes municípios mostrou a comercialização dos mesmos em locais diferentes