1,477 research outputs found
Multi-view convolutional recurrent neural networks for lung cancer nodule identification
Screening via low-dose Computer Tomography (CT) has been shown to reduce lung cancer mortality rates by at least 20%. However, the assessment of large numbers of CT scans by radiologists is cost intensive, and potentially produces varying and inconsistent results for differing radiologists (and also for temporally-separated assessments by the same radiologist). To overcome these challenges, computer aided diagnosis systems based on deep learning methods have proved an effective in automatic detection and classification of lung cancer.
Latterly, interest has focused on the full utilization of the 3D information in CT scans using 3D-CNNs and related approaches. However, such approaches do not intrinsically correlate size and shape information between slices. In this work, an innovative approach to Multi-view Convolutional Recurrent Neural Networks (MV-CRecNet) is proposed that exploits shape, size and cross-slice variations while learning to identify lung cancer nodules from CT scans. The multiple-views that are passed to the model ensure better generalization and the learning of robust features.
We evaluate the proposed MV-CRecNet model on the reference Lung Image Database Consortium and Image Database Resource Initiative and Early Lung Cancer Action Program datasets; six evaluation metrics are applied to eleven comparison models for testing. Results demonstrate that proposed methodology outperforms all of the models against all of the evaluation metrics
Electrical transport and optical studies of ferromagnetic Cobalt doped ZnO nanoparticles exhibiting a metal-insulator transition
The observed correlation of oxygen vacancies and room temperature
ferromagnetic ordering in Co doped ZnO1-o nanoparticles reported earlier (Naeem
et al Nanotechnology 17, 2675-2680) has been further explored by transport and
optical measurements. In these particles room temperature ferromagnetic
ordering had been observed to occur only after annealing in forming gas. In the
current work the optical properties have been studied by diffuse reflection
spectroscopy in the UV-Vis region and the band gap of the Co doped compositions
has been found to decrease with Co addition. Reflections minima are observed at
the energies characteristic of Co+2 d-d (tethrahedral symmetry) crystal field
transitions, further establishing the presence of Co in substitutional sites.
Electrical transport measurements on palletized samples of the nanoparticles
show that the effect of a forming gas is to strongly decrease the resistivity
with increasing Co concentration. For the air annealed and non-ferromagnetic
samples the variation in the resistivity as a function of Co content are
opposite to those observed in the particles prepared in forming gas. The
ferromagnetic samples exhibit an apparent change from insulator to metal with
increasing temperatures for T>380K and this change becomes more pronounced with
increasing Co content. The magnetic and resistive behaviors are correlated by
considering the model by Calderon et al [M. J. Calderon and S. D. Sarma, Annals
of Physics 2007 (Accepted doi: 10.1016/j.aop.2007.01.010] where the
ferromagnetism changes from being mediated by polarons in the low temperature
insulating region to being mediated by the carriers released from the weakly
bound states in the higher temperature metallic region.Comment: 7 pages, 6 figure
SVAMP: sequence variation analysis, maps and phylogeny.
SUMMARY: SVAMP is a stand-alone desktop application to visualize genomic variants (in variant call format) in the context of geographical metadata. Users of SVAMP are able to generate phylogenetic trees and perform principal coordinate analysis in real time from variant call format (VCF) and associated metadata files. Allele frequency map, geographical map of isolates, Tajima's D metric, single nucleotide polymorphism density, GC and variation density are also available for visualization in real time. We demonstrate the utility of SVAMP in tracking a methicillin-resistant Staphylococcus aureus outbreak from published next-generation sequencing data across 15 countries. We also demonstrate the scalability and accuracy of our software on 245 Plasmodium falciparum malaria isolates from three continents. AVAILABILITY AND IMPLEMENTATION: The Qt/C++ software code, binaries, user manual and example datasets are available at http://cbrc.kaust.edu.sa/svamp CONTACT: [email protected] or [email protected] SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online
Genomic characterization of antibiotic resistant Escherichia coli isolated from domestic chickens in Pakistan
Poultry husbandry is important for the economic health of Pakistan, but the Pakistani poultry industry is negatively impacted by infections fro
Gauged linear sigma model and pion-pion scattering
A simple gauged linear sigma model with several parameters to take the
symmetry breaking and the mass differences between the vector meson and the
axial vector meson into account is considered here as a possibly useful
template for the role of a light scalar in QCD as well as for (at a different
scale) an effective Higgs sector for some recently proposed walking technicolor
models. An analytic procedure is first developed for relating the Lagrangian
parameters to four well established (in the QCD application) experimental
inputs. One simple equation distinguishes three different cases:1. QCD with
axial vector particle heavier than vector particle, 2. possible technicolor
model with vector particle heavier than the axial vector one, 3. the unphysical
QCD case where both the KSRF and Weinberg relations hold. The model is applied
to the s-wave pion-pion scattering in QCD. Both the near threshold region and
(with an assumed unitarization) theglobal region up to about 800 MeV are
considered. It is noted that there is a little tension between the choice of
bare sigma mass parameter for describing these two regions. If a reasonable
globa fit is made, there is some loss of precision in the near threshold
region.Comment: 19 pages, 9 figure
Effect of Reducing Atmosphere on the Magnetism of Zn1-xCoxO Nanoparticles
We report the crystal structure and magnetic properties of Zn1-xCoxO
nanoparticles synthesized by heating metal acetates in organic solvent. The
nanoparticles were crystallized in wurtzite ZnO structure after annealing in
air and in a forming gas (Ar95%+H5%). The X-ray diffraction and X-ray
photoemission spectroscopy (XPS) data for different Co content show clear
evidence for the Co+2 ions in tetrahedral symmetry, indicating the substitution
of Co+2 in ZnO lattice. However samples with x=0.08 and higher cobalt content
also indicate the presence of Co metal clusters. Only those samples annealed in
the reducing atmosphere of the forming gas, and that showed the presence of
oxygen vacancies, exhibited ferromagnetism at room temperature. The air
annealed samples remained non-magnetic down to 77K. The essential ingredient in
achieving room temperature ferromagnetism in these Zn1-xCoxO nanoparticles was
found to be the presence of additional carriers generated by the presence of
the oxygen vacancies.Comment: 11 pages, 6 figures, submitted to Nanotechnology IO
Wet chemical synthesis and characterisation of Ba0.5Sr0.5Ce0.6Zr0.2Gd0.1Y0.1O3 − δ proton conductor
M. N. Khan would like to thank University of Brunei Darussalam for a Graduate Research Scholarship. L.C. Lim and P. Hing thank UBD, and Government of Brunei Darussalam (S&T 17) for a generous research grant under the UBD Energy programme.Ba0.5Sr0.5Ce0.6Zr0.2Gd0.1Y0.1O3 − δ (BSCZGY) proton conducting electrolyte material for intermediate temperature solid oxide fuel cells (IT-SOFCs) has been synthesized by a sol-gel modified Pechini process and its sinterability, thermal expansion, microstructure, ionic conductivity and chemical stability have been investigated. Ionic conductivity at 700 °C was measured to be ~ 8 × 10− 3 S cm− 1 in wet 5 vol.% H2/Ar atmospheres. Chemical stability test in pure CO2 up to 1200 °C shows that the material is highly stable; better than the stability of BaZr0.3Ce0.5Y0.1Yb0.1O3 − δ.PostprintPeer reviewe
Flow- and context-sensitive points-to analysis using generalized points-to graphs
© Springer-Verlag GmbH Germany 2016. Bottom-up interprocedural methods of program analysis construct summary flow functions for procedures to capture the effect of their calls and have been used effectively for many analyses. However, these methods seem computationally expensive for flow- and context- sensitive points-to analysis (FCPA) which requires modelling unknown locations accessed indirectly through pointers. Such accesses are com- monly handled by using placeholders to explicate unknown locations or by using multiple call-specific summary flow functions. We generalize the concept of points-to relations by using the counts of indirection levels leaving the unknown locations implicit. This allows us to create sum- mary flow functions in the form of generalized points-to graphs (GPGs) without the need of placeholders. By design, GPGs represent both mem- ory (in terms of classical points-to facts) and memory transformers (in terms of generalized points-to facts). We perform FCPA by progressively reducing generalized points-to facts to classical points-to facts. GPGs distinguish between may and must pointer updates thereby facilitating strong updates within calling contexts. The size of GPGs is linearly bounded by the number of variables and is independent of the number of statements. Empirical measurements on SPEC benchmarks show that GPGs are indeed compact in spite of large procedure sizes. This allows us to scale FCPA to 158 kLoC using GPGs (compared to 35 kLoC reported by liveness-based FCPA). Thus GPGs hold a promise of efficiency and scalability for FCPA without compro- mising precision
Physicochemical, in vitro and in vivo evaluation of flurbiprofen microemulsion
Flurbiprofen, a potent nonsteroidal anti-inflammatory drug, is widely used for relief of pain in patients suffering from rheumatic diseases, migraine, sore throat and primary dysmenorrheal. However, this drug has many gastrointestinal side effects produced by its oral administration, such as gastric bleeding and peptic ulcer. These effects were responsible for non-compliance among patients, which ultimately results in treatment failure. The physicochemical properties of flurbiprofen, make it a suitable candidate for transdermal drug delivery, which can overcome the drawbacks of oral administration. In this sense, microemulsions have been proved to increase the cutaneous absorption of lipophilic drugs when compared to conventional drug delivery systems. The purpose of this study was to formulate and characterize gel based microemulsions, for topical delivery of flurbiprofen. Different gel bases, containing microemulsion and hydro-alcoholic solution of flurbiprofen, were developed and compared. In vitro study showed that gels containing microemulsion had a higher permeation rate than those containing hydro-alcoholic solutions. Additionally, formulation of Carbopol-I (microemulsion) showed higher percent of inhibition of inflammation than others bases. Further, skin irritation study demonstrated that Carbopol-I was none irritating. Flurbiprofen microemulsion incorporated on Carbopol-I showed physicochemical, in vitro and in vivo characteristics suitable for the development of alternative transdermal delivery formulation87
Number, frequency and time interval of examinations under anesthesia in bilateral retinoblastoma
PURPOSE: Current practice in retinoblastoma (Rb) has transformed this malignancy into a curable disease. More attention should therefore be given to quality of life considerations, including measures related to examinations under anesthesia (EUAs). We aimed to investigate EUA measures in bilateral Rb patients and compare the findings to EUAs in unilateral Rb. METHODS: A retrospective analysis of bilateral Rb patients that presented to the London Rb service from 2006 to 2013, were treated and had long-term follow-up. RESULTS: A total of 62 Rb patients, 15 (24.2%) of which had International Intraocular Retinoblastoma Classification (IIRC) group A/B/no Rb at presentation, 26 (41.9%) C/D, and 21 (33.9%) were E in at least one eye. The mean number of EUAs was 35.8 ± 21.5, mean time from first to last EUA was 50.6 ± 19.9 months, and mean EUA frequency was 0.715 ± 0.293 EUAs/month. IIRC group was found not to correlate with any of the EUA measures. Age at presentation inversely correlated with time interval from first to last EUA and to EUA frequency (p ≤ 0.029). Rb family history correlated with the latter measure (p = 0.005) and intraophthalmic artery chemotherapy and brachytherapy correlated with all EUA measures (p ≤ 0.029). Mean follow-up time was 80.1 ± 24.3 months. When compared with a previously reported cohort of unilateral Rb, the present group underwent 3× more EUAs (p < 0.001) over nearly double the time (p < 0.001). CONCLUSIONS: Families should be counselled on anticipated EUA burden associated with bilateral Rb. In this respect, age at presentation and family history were found to have a predictive role, whereas IIRC group did not
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