14,933 research outputs found
The Coulomb-Higgs transition of the three-parameter U(1)-Higgs model
We find a first order Coulomb--Higgs phase transition at moderately large
values of the coupling , and no evidence for a change of order at any
finite value of it.Comment: 3 pages, uuencoded compressed ps file. Contribution to Lattice '9
WHAT IS THE LENGTH OF A SNAKE?
The way that herpetologists have traditionally measuredlive snakes is by stretching them on a ruler andrecording the total length (TL). However, due to the thinconstitution of the snake, the large number of intervertebraljoints, and slim muscular mass of most snakes,it is easier to stretch a snake than it is to stretch anyother vertebrate. The result of this is that the length ofa snake recorded is infl uenced by how much the animalis stretched. Stretching it as much as possible is perhapsa precise way to measure the length of the specimenbut it might not correspond to the actual length ofa live animal. Furthermore, it may seriously injure a livesnake. Another method involves placing the snake in aclear plexiglass box and pressing it with a soft materialsuch as rubber foam against a clear surface. Measuringthe length of the snake may be done by outlining itsbody with a string (Fitch 1987; Frye 1991). However, thismethod is restricted to small animals that can be placedin a box, and in addition, no indications of accuracy of thetechnique are given. Measuring the snakes with a fl exibletape has also been reported (Blouin-Demers 2003)but when dealing with a large animals the way the tapeis positioned can produce great variance on the fi nal outcome.In this contribution we revise alternative ways tomeasuring a snake and propose a method that offers repeatableresults. We further analyze the precision of thismethod by using a sample of measurements taken fromwild populations of green anacondas (Eunectes murinus)with a large range of sizes
Unfolding Rates for the Diffusion-Collision Model
In the diffusion-collision model, the unfolding rates are given by the
likelihood of secondary structural cluster dissociation. In this work, we
introduce an unfolding rate calculation for proteins whose secondary structural
elements are -helices, modeled from thermal escape over a barrier which
arises from the free energy in buried hydrophobic residues. Our results are in
good agreement with currently accepted values for the attempt rate.Comment: Shorter version of cond-mat/0011024 accepted for publication in PR
Molecular evolution of aphids and their primary ( Buchnera sp.) and secondary endosymbionts: implications for the role of symbiosis in insect evolution.
Aphids maintain an obligate, endosymbiotic association with Buchnera sp., a bacterium closely related to Escherichia coli. Bacteria are housed in specialized cells of organ-like structures called bacteriomes in the hemocoel of the aphid and are maternally transmitted. Phylogenetic studies have shown that the association had a single origin, dated about 200-250 million years ago, and that host and endosymbiont lineages have evolved in parallel since then. However, the pattern of deepest branching within the aphid family remains unsolved, which thereby hampers tin appraisal of, for example, the role played by horizontal gene transfer in the early evolution of Buchnera. The main role of Buchnera in this association is the biosynthesis and provisioning of essential amino acids to its aphid host. Physiological and metabolic studies have recently substantiated such nutritional role. In addition, genetic studies of Buchnera from several aphids have shown additional modifications, such as strong genome reduction, high A+T content compared to free-living bacteria, differential evolutionary rates, a relative increase in the number of non-synonymous substitutions, and gene amplification mediated by plasmids. Symbiosis is an active process in insect evolution cis revealed by the intermediate values of the previous characteristics showed by secondary symbionts compared to free-living bacteria and Buchnera
The high-pressure behavior of CaMoO4
We report a high-pressure study of tetragonal scheelite-type CaMoO4 up to 29
GPa. In order to characterize its high-pressure behavior, we have combined
Raman and optical-absorption measurements with density-functional theory
calculations. We have found evidence of a pressure-induced phase transition
near 15 GPa. Experiments and calculations agree in assigning the high-pressure
phase to a monoclinic fergusonite-type structure. The reported results are
consistent with previous powder x-ray-diffraction experiments, but are in
contradiction with the conclusions obtained from earlier Raman measurements,
which support the existence of more than one phase transition in the pressure
range covered by our studies. The observed scheelite-fergusonite transition
induces significant changes in the electronic band gap and phonon spectrum of
CaMoO4. We have determined the pressure evolution of the band gap for the low-
and high-pressure phases as well as the frequencies and pressure dependences of
the Raman-active and infrared-active modes. In addition, based upon
calculations of the phonon dispersion of the scheelite phase, carried out at a
pressure higher than the transition pressure, we propose a possible mechanism
for the reported phase transition. Furthermore, from the calculations we
determined the pressure dependence of the unit-cell parameters and atomic
positions of the different phases and their room-temperature equations of
state. These results are compared with previous experiments showing a very good
agreement. Finally, information on bond compressibility is reported and
correlated with the macroscopic compressibility of CaMoO4. The reported results
are of interest for the many technological applications of this oxide.Comment: 36 pages, 10 figures, 8 table
Thiolate-protected golden fullerenes. A 32-ve core involving a hollow Au-32 cage
We have computationally investigated the possible formation of large hollow gold nanostructures based on a Au-32 core covered with a thiolate layer using relativistic density functional theory calculations. We have found that [Au-32@Au-12(SR)(18)](6-) is a plausible candidate that retains the structural, electronic and spherical aromatic properties of the Au-32 cage of its parent bare Au-32 golden fullerene. The study shows that the low-energy part of the optical spectrum can serve as a guide to identify such hollow gold structures among other small-sized gold nanoclusters with similar nuclearities. The low-lying excited states are dominated by 1f -> 1g transitions, which significantly distinguish hollow clusters from other nanoclusters, like the prominent [Au-25(SR)(18)](-) cluster, whose low-lying excitations are dominated by 1p /1d transitions. The gold nanoclusters studied here can serve as model compounds for assessing the metallic core size effects on the absorption energies and the influence of the surface structure of the gold core on the cluster properties. The present study suggests that it is also plausible that even larger hollow structures derived from Au-42, Au-72, and Au-92 golden fullerenes can exist.Peer reviewe
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