Mitochondrial Fatty Acid β-Oxidation Disorders: From Disease to Lipidomic Studies—A Critical Review

ReviewThis article belongs to the Special Issue Lipid Metabolism in Pathology and Health.Fatty acid oxidation disorders (FAODs) are inborn errors of metabolism (IEMs) caused by defects in the fatty acid (FA) mitochondrial β-oxidation. The most common FAODs are characterized by the accumulation of medium-chain FAs and long-chain (3-hydroxy) FAs (and their carnitine derivatives), respectively. These deregulations are associated with lipotoxicity which affects several organs and potentially leads to life-threatening complications and comorbidities. Changes in the lipidome have been associated with several diseases, including some IEMs. In FAODs, the alteration of acylcarnitines (CARs) and FA profiles have been reported in patients and animal models, but changes in polar and neutral lipid profile are still scarcely studied. In this review, we present the main findings on FA and CAR profile changes associated with FAOD pathogenesis, their correlation with oxidative damage, and the consequent disturbance of mitochondrial homeostasis. Moreover, alterations in polar and neutral lipid classes and lipid species identified so far and their possible role in FAODs are discussed. We highlight the need of mass-spectrometry-based lipidomic studies to understand (epi)lipidome remodelling in FAODs, thus allowing to elucidate the pathophysiology and the identification of possible biomarkers for disease prognosis and an evaluation of therapeutic efficacy.This research was funded by FCT/MEC (PIDDAC) for their financial support to LAQVREQUIMTE (UIDB/50006/2020), CESAM (UIDP/50017/2020 + UIDB/50017/2020 + LA/P/0094/2020), and the RNEM-Portuguese Mass Spectrometry Network (LISBOA-01-0145-FEDER-402-022125), financed by FCT/MCTES through national funds and, where applicable, co-financed by the FEDER, within the PT2020 Partnership Agreement and Compete 2020. Ana Moreira thanks the research contract under the research unit LAQV-REQUIMTE. Inês M. S. Guerra (2021.04754.BD) and Helena B. Ferreira (2020.04611.BD) are grateful to FCT for the PhD grants. Tânia Melo thanks the Junior Researcher contract in the scope of the Individual Call to Scientific Employment Stimulus 2020 (CEECIND/01578/2020). The authors are thankful to the COST Action EpiLipidNET, CA19105-Pan-European Network in Lipidomics, and EpiLipidomics.info:eu-repo/semantics/publishedVersio

Dried blood spots in clinical lipidomics: optimization and recent findings

ReviewDried blood spots (DBS) are being considered as an alternative sampling method of blood collection that can be used in combination with lipidomic and other omic analysis. DBS are successfully used in the clinical context to collect samples for newborn screening for the measurement of specific fatty acid derivatives, such as acylcarnitines, and lipids from whole blood for diagnostic purposes. However, DBS are scarcely used for lipidomic analysis and investigations. Lipidomic studies using DBS are starting to emerge as a powerful method for sampling and storage in clinical lipidomic analysis, but the major research work is being done in the pre- and analytical steps and procedures, and few in clinical applications. This review presents a description of the impact factors and variables that can affect DBS lipidomic analysis, such as the type of DBS card, haematocrit, homogeneity of the blood drop, matrix/chromatographic effects, and the chemical and physical properties of the analyte. Additionally, a brief overview of lipidomic studies using DBS to unveil their application in clinical scenarios is also presented, considering the studies of method development and validation and, to a less extent, for clinical diagnosis using clinical lipidomics. DBS combined with lipidomic approaches proved to be as effective as whole blood samples, achieving high levels of sensitivity and specificity during MS and MS/MS analysis, which could be a useful tool for biomarker identification. Lipidomic profiling using MS/MS platforms enables significant insights into physiological changes, which could be useful in precision medicine.Thanks are due for the financial support to the University of Aveiro and FCT/MCT for the fnancial support to research units CESAM (UIDB/50017/2020, UIDP/50017/2020 & LA/P/0094/2020), LAQV-REQUIMTE (UIDB/50006/2020), and CICECO-Aveiro Institute of Materials (UIDB/50011/2020, UIDP/50011/2020 & LA/P/0006/2020), and to RNEM, Portuguese Mass Spectrometry Network (LISBOA-01-0145-FEDER-402-022125) through national funds and, where applicable, co-fnanced by the FEDER, within the PT2020. Helena Beatriz Ferreira is grateful to FCT for her PhD Grant (2020.04611.BD). Inês M. S. Guerra is grateful to FCT for her PhD Grant (2021.04754.BD). Ana S. P. Moreira thanks the contract in the scope of the project ‘Coccolitho4BioMat’ (POCI 01-0145-FEDER-031032). Tânia Melo thanks the Junior Researcher contract in the scope of the Individual Call to Scientifc Employment Stimulus 2020 (CEECIND/01578/2020). The authors are thankful to the COST Action EpiLipidNET, CA19105-Pan-European Network in Lipidomics and EpiLipidomics.info:eu-repo/semantics/publishedVersio

Data on coffee composition and mass spectrometry analysis of mixtures of coffee related carbohydrates, phenolic compounds and peptides

The data presented here are related to the research paper entitled “Transglycosylation reactions, a main mechanism of phenolics incorporation in coffee melanoidins: inhibition by Maillard reaction” (Moreira et al., 2017) [1]. Methanolysis was applied in coffee fractions to quantify glycosidically-linked phenolics in melanoidins. Moreover, model mixtures mimicking coffee beans composition were roasted and analyzed using mass spectrometry-based approaches to disclose the regulatory role of proteins in transglycosylation reactions extension. This article reports the detailed chemical composition of coffee beans and derived fractions. In addition, it provides gas chromatography–mass spectrometry (GC–MS) chromatograms and respective GC–MS spectra of silylated methanolysis products obtained from phenolic compounds standards, as well as the detailed identification of all compounds observed by electrospray mass spectrometry (ESI-MS) analysis of roasted model mixtures, paving the way for the identification of the same type of compounds in other samples. Keywords: Coffee, Carbohydrates, Polysaccharides, Phenolics, Mass spectrometry, Melanoidin

Insights of species-specific polar lipidome signatures of seaweeds fostering their valorization in the blue bioeconomy

The valorization of seaweeds has generated unprecedented interest in recent years due to their unique chemical characteristics. The taxonomic differentiation between Chlorophyta, Rhodophyta, and Ochrophyta is often supported by their contrasting chemical characteristics. Polar lipids are the most abundant class of lipids in several seaweeds species often labelled as valuable phytochemicals. Nevertheless, little is still known about how the polar lipidome of seaweeds varies within and among different phyla. In this study, the polar lipidome of six seaweeds farmed under controlled conditions in a land-based integrated multitrophic aquaculture (IMTA), belonging to Chlorophyta (Ulva rigida and Codium tomentosum), Rhodophyta (Gracilaria gracilis, Palmaria palmata and Porphyra dioica), and Ochrophyta (Fucus vesiculosus) was characterized using state of the art high-resolution LC-MS analysis. The seaweeds were harvested during the same season and the same time window to control the biotic and abiotic shaping of their polar lipidome. In total, 477 different species of polar lipids (m/z values) were identified and distributed over the six seaweeds surveyed. Only a small group of 35 species of polar lipids were shared among all the seaweed species analyzed in this study. The distribution of the polar lipid species and lipid classes showed a trend towards grouping by phylum although seaweed specie specific polar lipid signatures can be assigned. Matching the data gathered in the present study with those previously acquired showed a species-specific clustering, which confirm the uniqueness of these natural biochemical fingerprints. Recognition of the specific lipidome is necessary because polar lipids are assigned with important bioactive properties. This knowledge will allow designing new strategies for chemical tuning during farming so that the yield of target compounds can be improved, and these valuable living resources can fully contribute to the sustainable growth of a blue bioeconomy. •The polar lipidome of six farmed red, green and brown seaweeds were compared.•In total, 477 different species of polar lipids (m/z values) were identified in the combined seaweeds lipidome.•Only 35 species of polar lipids were shared among all the seaweed species.•The species-specific polar lipidome was unraveled

Oxidation of amylose and amylopectin by hydroxyl radicals assessed by electrospray ionisation mass spectrometry

The hydroxyl radicals (HO center dot) are one of the most reactive oxygen species (ROS) involved in the oxidative damage of biological molecules, including carbohydrates. During the industrial processing of food, ROS can be formed. In order to identify the structural changes induced in starch by oxidation, amylose, amylopectin, and maltotriose, an oligosaccharide structurally related to these polysaccharides, were subjected to oxidation with HO center dot generated under Fenton reaction conditions (Fe2+/H2O2). The oxidised polysaccharides were hydrolysed by alpha-amylase and the obtained oligosaccharides were fractionated by ligand-exchange/size-exclusion chromatography. Both acidic and neutral alpha-amylase resistant oligosaccharides were characterized by mass spectrometry. In oxidised neutral products, new keto, hydroxyl, and hydroperoxy moieties, and oxidative ring scission were observed at the reducing end of the oligosaccharides. The acid sugar residues occurred at the reducing end and included gluconic and glucuronic acid derivatives, and acids formed by oxidative ring scission, namely, arabinonic, erythronic, glyceric and glycolic acids. (C) 2016 Elsevier Ltd. All rights reserved

Genetic variability and pedigree analysis of Brazilian common bean elite genotypes Variabilidade genética e análise de pedigree em genótipos elite brasileiros de feijoeiro comum

Genetic diversity is essential for any breeding program. However, breeders tend to concentrate on specific genotypes, which combine traits of interest and may be used as progenitors in several breeding programs. Common bean (Phaseolus vulgaris L.) breeding programs are not different in this sense. In this study, the genetic diversity of 21 common bean elite lines from the Bean Regional Trials conducted by the Embrapa Rice and Bean Research Center was evaluated using the Random Amplified Polymorphic DNA (RAPD) and pedigree analyses. Based on genetic dissimilarity, three groups were defined: group I - lines 1, 9 and 10, with low genetic distances among them (0.00 to 0.06), originated from 11 Mesoamerican parents; group II - 17 lines with genetic distances ranging from 0.03 to 0.33, originated from 50 parents (mostly Mesoamerican); and group III - line 21 (PR 93201472), which parents are the Andean cultivar 'Pompadour' and the cultivar 'Irai' (unknown origin). The genetic distances between line 21 and the lines of the other two groups varied from 0.68 to 0.93. Pedigree analyses demonstrated that cultivars 'Carioca', 'Cornell 49-242', 'Jamapa', 'Tlalnepantla 64', 'Tara' and 'Veranic 2', all of Mesoamerican origin, were the most widely used parents for developing lines present in group II.<br>Diversidade genética é um pré-requisito em qualquer tipo de programa de melhoramento. No entanto, os melhoristas tendem a se concentrar em alguns genótipos que reúnem características de interesse e estes são usados em diversos programas de melhoramento. Os programas de melhoramento do feijoeiro (Phaseolus vulgaris L.) não são diferentes quanto a esse aspecto. Visando o estudo da variabilidade genética, 21 cultivares-elite dos Ensaios Regionais de Feijão coordenados pela Embrapa Arroz e Feijão, foram caracterizados com marcadores moleculares Random Amplified Polymorphic DNA (RAPD). Também, os pedigrees dos 21 cultivares elite foram pesquisados com o objetivo de estudar os progenitores usados no seu desenvolvimento. Baseado nos dados de distância genética, um gráfico de dispersão foi construído e três grupos foram identificados: 1) grupo I, formado pelas linhas 1, 9 e 10, com baixa diversidade genética entre si (0,00 a 0,06), originadas de 11 progenitores de origem Mesoamericana; 2) grupo II, formado por 17 linhagens com distâncias genéticas variando de 0,03 a 0,33, originadas de 50 progenitores, a maioria de origem Mesoamericana; e, 3) grupo III, formado pelo cultivar PR 93201472 (linhagem 21), que tem os cultivares 'Pompadour' (origem Andina) e 'Irai' (origem desconhecida) como seus progenitores. As distâncias genéticas entre PR 93201472 e os outros 20 cultivares variaram entre 0,68 e 0,93. De acordo com seus pedigrees, os cultivares 'Carioca', 'Cornell 49-242', 'Jamapa', 'Tlalnepantla 64', 'Tara' e 'Veranic 2', todos de origem Mesoamericana, foram os progenitores mais empregados na geração das linhagens do grupo II

Crescimento de Hymenaea courbaril L. var. stilbocarpa (Hayne) Lee et Lang. e Enterolobium contortisiliquum (Vell.) Morong (Leguminosae) sob diferentes níveis de sombreamento Growth of Hymenaea courbaril L. var. stilbocarpa (Hayne) Lee et Lang. e Enterolobium contortisiliquum (Vell.) Morong (Leguminosae) under different shading levels

Hymenaea courbaril L. var. stilbocarpa (Hayne) Lee et Lang. é uma espécie clímax tolerante a sombra, ao passo que Enterolobium contortisiliquum (Vell.) Morong. é uma espécie pioneira. O desenvolvimento destas espécies pode refletir a habilidade de adaptação aos diferentes fatores ambientais (luz, água e temperatura) no local em que estão crescendo. O suprimento inadequado de um desses fatores pode reduzir o vigor da planta e limitar seu desenvolvimento. O presente trabalho teve como objetivo avaliar os efeitos do nível de sombreamento no crescimento e a concentração de pigmentos fotossintéticos em duas espécies de leguminosas arbóreas, Hymenaea courbaril L. var. stilbocarpa (Hayne) Lee et Lang. e Enterolobium contortisiliquum (Vell.) Morong. O experimento foi conduzido no Setor de Olericultura do Centro Universitário Luterano de Ji-Paraná (CEULJI/ULBRA)/Rondônia. Durante a formação das mudas, ambas as espécies foram expostas a quatro tratamentos de sombra: 0 % (controle - sol pleno); 30 %; 50 % e 80 %. Cada tratamento foi constituído com três repetições de cada espécie; o delineamento experimental foi inteiramente casualisado. Quatro meses após a semeadura, as seguintes análises foram realizadas: número de folhas, altura da planta, comprimento do sistema radicular, massa seca total e concentração de pigmentos fotossintéticos. O tratamento sob sol pleno afetou negativamente o crescimento de ambas as espécies. As mudas crescidas sob 50% e 80% apresentaram melhor desenvolvimento. Conforme o aumento do sombreamento houve um decréscimo na razão clorofila a/b e um aumento nas concentrações de clorofila total e carotenóides totais.<br>Hymenaea courbaril L. var. stilbocarpa (Hayne) Lee et Lang. is a clímax shadow tolerant specie and Enterolobium contortisiliquum (Vell.) Morong., by the other hand, is considered as a pioneer specie. The development of these species may reflect its adaptation ability to different environmental elements (light, water and temperature) at its growth site. An inadequate supply of some of these elements may reduce plant vigor and limit its development. This work aimed to evaluate the effects of shade intensity on the growth and photosynthetic pigment concentration of two arboreal legumes that are typical to northern Brazil, namely, the Hymenaea courbaril L. var. stilbocarpa (Hayne) Lee et Lang. and the Enterolobium contortisiliquum (Vell.) Morong. The experiment was carried out at the Centro Universitário Luterano de Ji-Paraná (CEULJ/ULBRA)/Rondônia. During the formation of the seedlings, both species were exposed to four treatments of shade: 0 % (control - without shade); 30 %; 50 % e 80 %. Each treatment was carried out with three replications for each species; the experimental design was completely randomized. Four month after sowing, the following analyses were carried out: number of leaves, plant height, roots length, dry mass and photosynthetic pigment concentration. The treatment under 0% shade impaired the seedling growth of both species. The most favorable treatments were 50 % and 80 % shade. According to the shade intensity, the chlorophyll a/b ratio decreased and the chlorophyll and carotenoids increased

Measurement of electrons from semileptonic heavy-flavour hadron decays at midrapidity in pp and Pb–Pb collisions at √sNN = 5.02 TeV

The differential invariant yield as a function of transverse momentum (pT) of electrons from semileptonic heavy-flavour hadron decays was measured at midrapidity in central (0–10%), semi-central (30–50%) and peripheral (60–80%) lead–lead (Pb–Pb) collisions at √sNN = 5.02 TeV in the pT intervals 0.5–26 GeV/c (0–10% and 30–50%) and 0.5–10 GeV/c (60–80%). The production cross section in proton–proton (pp) collisions at √s = 5.02 TeV was measured as well in 0.5 < pT < 10 GeV/c and it lies close to the upper band of perturbative QCD calculation uncertainties up to pT = 5 GeV/c and close to the mean value for larger pT. The modification of the electron yield with respect to what is expected for an incoherent superposition of nucleon–nucleon collisions is evaluated by measuring the nuclear modification factor RAA. The measurement of the RAA in different centrality classes allows in-medium energy loss of charm and beauty quarks to be investigated. The RAA shows a suppression with respect to unity at intermediate pT, which increases while moving towards more central collisions. Moreover, the measured RAA is sensitive to the modification of the parton distribution functions (PDF) in nuclei, like nuclear shadowing, which causes a suppression of the heavy-quark production at low pT in heavy-ion collisions at LHC