Observations of pumping and vortex dynamics due to a cylinder oscillating normal to a plane wall

Understanding the fluid dynamics associated with a circular cylinder oscillating normal to a plane wall is important for safe design of offshore infrastructure, such as power cables and pipeline risers. This paper investigates the fluid dynamics of an oscillating cylinder with no imposed incident current experimentally using flow visualisation and force measurements where the ratio of the cylinder Reynolds number (Re) to Keulegan–Carpenter number (KC) is β = 500 and KC varies between 2 and 12. The minimum distance between the cylinder and wall was between 12.5 % and 50 % of the diameter. Across this parameter space three primary vortex flow regimes were observed: (i) for KC ≤ 5, the flow field is approximately symmetric about the cylinder centreline and the velocity field between the cylinder and the wall resembled a pumping flow in phase with cylinder motion, which is well predicted by potential theory for most of the cycle; (ii) for 5 < KC < 8, the flow field is increasingly asymmetric but with frequent switching of the side associated with vortex shedding; and (iii) for KC ≥ 8, the flow field is consistently asymmetric due to vortex shedding. The in-line force increases when the cylinder is near the wall due to dynamic pressures associated with pumping. This increase can be estimated using potential theory superimposed onto the force time history for an isolated cylinder at the same KC and Re. This study complements recent numerical modelling focused on low Reynolds number conditions and provides important insights into the fluid mechanics associated with trenching beneath cable and pipeline risers

Results of the 2016 Indianapolis Biodiversity Survey, Marion County, Indiana

Surprising biodiversity can be found in cities, but urban habitats are understudied. We report on a bioblitz conducted primarily within a 24-hr period on September 16 and 17, 2016 in Indianapolis, Indiana, USA. The event focused on stretches of three waterways and their associated riparian habitat: Fall Creek (20.6 ha; 51 acres), Pleasant Run (23.5 ha; 58 acres), and Pogue’s Run (27.1 ha; 67 acres). Over 75 scientists, naturalists, students, and citizen volunteers comprised 14 different taxonomic teams. Five hundred ninety taxa were documented despite the rainy conditions. A brief summary of the methods and findings are presented here. Detailed maps of survey locations and inventory results are available on the Indiana Academy of Science website (https://www.indianaacademyofscience.org/)

Resilience and food security: rethinking an ecological concept

1. Focusing on food production, in this paper we define resilience in the food security context as maintaining production of sufficient and nutritious food in the face of chronic and acute environmental perturbations. In agri-food systems, resilience is manifest over multiple spatial scales: field, farm, regional and global. Metrics comprise production and nutritional diversity as well as socio-economic stability of food supply. 2. Approaches to enhancing resilience show a progression from more ecologically-based methods at small scales to more socially-based interventions at larger scales. At the field scale, approaches include the use of mixtures of crop varieties, livestock breeds and of forage species, polycultures, and boosting ecosystem functions. Stress-tolerant crops, or with greater plasticity, provide technological solutions. 3. At the farm scale, resilience may be conferred by diversifying crops and livestock and by farmers implementing adaptive approaches in response to perturbations. Biodiverse landscapes may enhance resilience, but the evidence is weak. At regional to global scales, resilient food systems will be achieved by coordination and implementation of resilience approaches among farms, advice to farmers and targeted research. 4. Synthesis. Threats to food production are predicted to increase under climate change and land degradation. Holistic responses are needed that integrate across spatial scales. Ecological knowledge is critical, but should be implemented alongside agronomic solutions and socio-economic transformations

Development of a single, practical measure of surgical site infection (SSI) for patient report or observer completion

Background: Surgical site infections (SSIs) are the third most common hospital-associated infection and can lead to significant patient morbidity and healthcare costs. Identification of SSIs is key to surveillance and research but reliable assessment is challenging, particularly after hospital discharge when most SSIs present. Existing SSI measurement tools have limitations and their suitability for post-discharge surveillance is uncertain. Aims: This study aimed to develop a single measure to identify SSI after hospital discharge, suitable for patient or observer completion. Methods: A three-phase mixed methods study was undertaken: Phase 1, an analysis of existing tools and semi-structured interviews with patients and professionals to establish the content of the measure; Phase 2, development of questionnaire items suitable for patients and professionals; Phase 3, pre-testing the single measure to assess acceptability and understanding to both stakeholder groups. Interviews and pre-testing took place over 12 months in 2014–2015 with patients and professionals from five specialties recruited from two UK hospital Trusts. Findings: Analyses of existing tools and interviews identified 19 important domains for assessing SSIs. Domains were developed into provisional questionnaire items. Pre-testing and iterative revision resulted in a final version with 16 items that were understood and easily completed by patients and observers (healthcare professionals). Conclusion: A single patient and observer measure for post-discharge SSI assessment has been developed. Further testing of the validity, reliability and accuracy of the measure is underway. </jats:sec

Analysis of uncertainties in the estimates of nitrous oxide and methane emissions in the UK’s greenhouse gas inventory for agriculture

The UK’s greenhouse gas inventory for agriculture uses a model based on the IPCC Tier 1 and Tier 2 26 methods to estimate the emissions of methane and nitrous oxide from agriculture. The inventory 27 calculations are disaggregated at country level (England, Wales, Scotland and Northern Ireland). 28 Before now, no detailed assessment of the uncertainties in the estimates of emissions had been 29 done. We used Monte Carlo simulation to do such an analysis. We collated information on the 30 uncertainties of each of the model inputs. The uncertainties propagate through the model and result 31 in uncertainties in the estimated emissions. Using a sensitivity analysis, we found that in England and 32 Scotland the uncertainty in the emission factor for emissions from N inputs (EF1) affected 33 uncertainty the most, but that in Wales and Northern Ireland, the emission factor for N leaching and 34 runoff (EF5) had greater influence. We showed that if the uncertainty in any one of these emission 35 factors is reduced by 50%, the uncertainty in emissions of nitrous oxide reduces by 10%. The 36 uncertainty in the estimate for the emissions of methane emission factors for enteric fermentation 37 in cows and sheep most affected the uncertainty in methane emissions. When inventories are 38 disaggregated (as that for the UK is) correlation between separate instances of each emission factor 39 will affect the uncertainty in emissions. As more countries move towards inventory models with 40 disaggregation, it is important that the IPCC give firm guidance on this topic

Assessing and disclosing test results for 'mild cognitive impairment': the perspective of old age psychiatrists in Scotland.

BACKGROUND: Mild cognitive impairment (MCI) is a condition that exists between normal healthy ageing and dementia with an uncertain aetiology and prognosis. This uncertainty creates a complex dynamic between the clinicians' conception of MCI, what is communicated to the individual about their condition, and how the individual responds to the information conveyed to them. The aim of this study was to explore clinicians' views around the assessment and communication of MCI in memory clinics. METHOD: As part of a larger longitudinal study looking at patients' adjustment to MCI disclosure, we interviewed Old Age Psychiatrists at the five participating sites across Scotland. The study obtained ethics approvals and the interviews (carried out between Nov 2020-Jan 2021) followed a semi-structured schedule focusing on [1] how likely clinicians are to use the term MCI with patients; [2] what tests clinicians rely on and how much utility they see in them; and [3] how clinicians communicate risk of progression to dementia. The interviews were voice recorded and were analysed using reflective thematic analysis. RESULTS: Initial results show that most clinicians interviewed (Total N = 19) considered MCI to have significant limitations as a diagnostic term. Nevertheless, most clinicians reported using the term MCI (n = 15/19). Clinical history was commonly described as the primary aid in the diagnostic process and also to rule out functional impairment (which was sometimes corroborated by Occupational Therapy assessment). All clinicians reported using the Addenbrooke's Cognitive Examination-III as a primary assessment tool. Neuroimaging was frequently found to have minimal usefulness due to the neuroradiological reports being non-specific. CONCLUSION: Our study revealed a mixture of approaches to assessing and disclosing test results for MCI. Some clinicians consider the condition as a separate entity among neurodegenerative disorders whereas others find the term unhelpful due to its uncertain prognosis. Clinicians report a lack of specific and sensitive assessment methods for identifying the aetiology of MCI in clinical practice. Our study demonstrates a broad range of views and therefore variability in MCI risk disclosure in memory assessment services which may impact the management of individuals with MCI

The 1B vaccine strain of Chlamydia abortus produces placental pathology indistinguishable from a wild type infection

Chlamydia abortus is one of the most commonly diagnosed causes of infectious abortion in small ruminants worldwide. Control of the disease (Enzootic Abortion of Ewes or EAE) is achieved using the commercial live, attenuated C. abortus 1B vaccine strain, which can be distinguished from virulent wild-type (wt) strains by polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis. Published studies applying this typing method and whole-genome sequence analyses to cases of EAE in vaccinated and non-vaccinated animals have provided strong evidence that the 1B strain is not attenuated and can infect the placenta causing disease in some ewes. Therefore, the objective of this study was to characterise the lesions found in the placentas of ewes vaccinated with the 1B strain and to compare these to those resulting from a wt infection. A C. abortus-free flock of multiparous adult ewes was vaccinated twice, over three breeding seasons, each before mating, with the commercial C. abortus 1B vaccine strain (Cevac® Chlamydia, Ceva Animal Health Ltd.). In the second lambing season following vaccination, placentas (n = 117) were collected at parturition and analysed by C. abortus-specific real-time quantitative PCR (qPCR). Two placentas, from a single ewe, which gave birth to live twin lambs, were found to be positive by qPCR and viable organisms were recovered and identified as vaccine type (vt) by PCR-RFLP, with no evidence of any wt strain being present. All cotyledons from the vt-infected placentas were analysed by histopathology and immunohistochemistry and compared to those from wt-infected placentas. Both vt-infected placentas showed lesions typical of those found in a wt infection in terms of their severity, distribution, and associated intensity of antigen labelling. These results conclusively demonstrate that the 1B strain can infect the placenta, producing typical EAE placental lesions that are indistinguishable from those found in wt infected animals

High Viral Diversity and Mixed Infections in Cerebral Spinal Fluid From Cases of Varicella Zoster Virus Encephalitis.

BACKGROUND: Varicella zoster virus (VZV) may cause encephalitis, both with and without rash. Here we investigate whether viruses recovered from the central nervous system (CNS; encephalitis or meningitis) differ genetically from those recovered from non-CNS samples. METHODS: Enrichment-based deep sequencing of 45 VZV genomes from cerebral spinal fluid (CSF), plasma, bronchoalveolar lavage (BAL), and vesicles was carried out with samples collected from 34 patients with and without VZV infection of the CNS. RESULTS: Viral sequences from multiple sites in the same patient were identical at the consensus level. Virus from vesicle fluid and CSF in cases of meningitis showed low-level diversity. By contrast, plasma, BAL, and encephalitis had higher numbers of variant alleles. Two CSF-encephalitis samples had high genetic diversity, with variant frequency patterns typical of mixed infections with different clades. CONCLUSIONS: Low viral genetic diversity in vesicle fluid is compatible with previous observations that VZV skin lesions arise from single or low numbers of virions. A similar result was observed in VZV from cases of VZV meningitis, a generally self-limiting infection. CSF from cases of encephalitis had higher diversity with evidence for mixed clade infections in 2 cases. We hypothesize that reactivation from multiple neurons may contribute to the pathogenesis of VZV encephalitis.Action Medical research GN2424 This work was supported by a UK MRC New Investigator Award to D. P. D; UCL/UCLH BRC (J. B.); Action Medical Research (grant number GN2424 to C. J. H); Swedish Research Council (P. N. and T. B.). The work was also support by an NIHR Fellowship (grant number DRF-2013-06-168 to F. M.), the Meningitis Research Foundation (grant number 0904.0), an NIHR Programme Grant in Applied Research (grant number RP-PG-0108-10048 to T. S.), and the NIHR Health Protection Research Unit in Emerging and Zoonotic Infections, University of Liverpool

A novel approach to sharing all available information from funded health research: the NIHR Journals Library

Abstract Background Relevant information on health research must be made publicly available in an accurate, timely and accessible manner if evidence is to inform practice and benefit patient care. Failure to publish research information represents a significant waste of research funds. However, recent studies have demonstrated that non-publication and selective or biased reporting remains a significant problem. The role of online publications in rectifying these issues by providing open access to study information is increasingly recognised. Objective This paper details a novel approach to publishing research information developed by the National Institute for Health Research (NIHR), a major funder of health research in the United Kingdom. The NIHR has enhanced its Journals Library (www.journalslibrary.nihr.ac.uk), providing an online repository of information from research funded through five programmes. We describe how the NIHR Journals Library provides a ‘thread’ of relevant information for each study, including protocols, participant information sheets, data linkages, final reports, publications and diverse knowledge products. We also discuss the Library as a ‘living’ resource, one that is updated as each study progresses from inception to completion. Finally, we consider the implications of the Library for the NIHR, other journals and research teams submitting information. Conclusion Openly publishing information from funded research in the NIHR Journals Library serves as a model of knowledge sharing, maximising return on investment and enhancing the usability and replicability of research findings for different evidence-user communities. The Library also supports wider ‘research on research’ ambitions, enabling users to interrogate the repository of NIHR-funded studies, enhancing the understanding of research commissioning, design, dissemination and impact. Video abstract: www.youtube.com/watch?v=8H03uxN_iTE