Rheology, dispersion, and cure kinetics of epoxy filled with amine‐ and non‐functionalized reduced graphene oxide for composite manufacturing

This study evaluates the effect of plasma surface functionalization of reduced graphene oxide particles on the processing characteristics and homogeneity of dispersion of a bisphenol A‐(epichlorhydrin) epoxy matrix and amine‐based hardener with varying weight fractions from 0.00 to 1.50 wt%. It was observed that amine‐functionalized reduced graphene oxide leads to a more drastic viscosity increase of up to 18‐fold of the uncured suspensions and that its presence influences the conversion rates of the curing reaction. Optical microscopy of thin sections and transmission electron microscopy analysis showed that a more homogeneous dispersion of the particles could be achieved especially at higher weight fractions by using an appropriate surface functionalization. This knowledge can be used to define suitable processing conditions for epoxies with amine‐based hardeners depending on the loading and functionalization of graphene‐related particles

Reconstruction of Network Evolutionary History from Extant Network Topology and Duplication History

Genome-wide protein-protein interaction (PPI) data are readily available thanks to recent breakthroughs in biotechnology. However, PPI networks of extant organisms are only snapshots of the network evolution. How to infer the whole evolution history becomes a challenging problem in computational biology. In this paper, we present a likelihood-based approach to inferring network evolution history from the topology of PPI networks and the duplication relationship among the paralogs. Simulations show that our approach outperforms the existing ones in terms of the accuracy of reconstruction. Moreover, the growth parameters of several real PPI networks estimated by our method are more consistent with the ones predicted in literature.Comment: 15 pages, 5 figures, submitted to ISBRA 201

Mobilisation and remobilisation of a large archetypal pathogenicity island of uropathogenic Escherichia coli in vitro support the role of conjugation for horizontal transfer of genomic islands

Background: A substantial amount of data has been accumulated supporting the important role of genomic islands (GEIs) - including pathogenicity islands (PAIs) - in bacterial genome plasticity and the evolution of bacterial pathogens. Their instability and the high level sequence similarity of different (partial) islands suggest an exchange of PAIs between strains of the same or even different bacterial species by horizontal gene transfer (HGT). Transfer events of archetypal large genomic islands of enterobacteria which often lack genes required for mobilisation or transfer have been rarely investigated so far. Results: To study mobilisation of such large genomic regions in prototypic uropathogenic E. coli (UPEC) strain 536, PAI II536 was supplemented with the mobRP4 region, an origin of replication (oriVR6K), an origin of transfer (oriTRP4) and a chloramphenicol resistance selection marker. In the presence of helper plasmid RP4, conjugative transfer of the 107-kb PAI II536 construct occured from strain 536 into an E. coli K-12 recipient. In transconjugants, PAI II536 existed either as a cytoplasmic circular intermediate (CI) or integrated site-specifically into the recipient’s chromosome at the leuX tRNA gene. This locus is the chromosomal integration site of PAI II536 in UPEC strain 536. From the E. coli K-12 recipient, the chromosomal PAI II536 construct as well as the CIs could be successfully remobilised and inserted into leuX in a PAI II536 deletion mutant of E. coli 536. Conclusions: Our results corroborate that mobilisation and conjugal transfer may contribute to evolution of bacterial pathogens through horizontal transfer of large chromosomal regions such as PAIs. Stabilisation of these mobile genetic elements in the bacterial chromosome result from selective loss of mobilisation and transfer functions of genomic islands

A compact and light-weight refractive telescope for the observation of extensive air showers

A general purpose instrument for imaging of Cherenkov light or fluorescence light emitted by extensive air showers is presented. Its refractive optics allows for a compact and light-weight design with a wide field-of-view of 12{\deg}. The optical system features a 0.5 m diameter Fresnel lens and a camera with 61 pixels composed of Winston cones and large-sized 6x6 mm photo sensors. As photo sensors, semi conductor light sensors (SiPMs) are utilized. The camera provides a high photon detection efficiency together with robust operation. The enclosed optics permit operation in regions of harsh environmental conditions. The low price of the telescope allows the production of a large number of telescopes and the application of the instrument in various projects, such as FAMOUS for the Pierre Auger Observatory, HAWC's Eye for HAWC or IceAct for IceCube. In this paper the novel design of this telescope and first measurements are presented.Comment: Submitted to JINST, second (minor) revisio

Challenges in RNA virus bioinformatics

Motivation: Computer-assisted studies of structure, function and evolution of viruses remains a neglected area of research. The attention of bioinformaticians to this interesting and challenging field is far from commensurate with its medical and biotechnological importance. It is telling that out of >200 talks held at ISMB 2013, the largest international bioinformatics conference, only one presentation explicitly dealt with viruses. In contrast to many broad, established and well-organized bioinformatics communities (e.g. structural genomics, ontologies, next-generation sequencing, expression analysis), research groups focusing on viruses can probably be counted on the fingers of two hands. Results: The purpose of this review is to increase awareness among bioinformatics researchers about the pressing needs and unsolved problems of computational virology. We focus primarily on RNA viruses that pose problems to many standard bioinformatics analyses owing to their compact genome organization, fast mutation rate and low evolutionary conservation. We provide an overview of tools and algorithms for handling viral sequencing data, detecting functionally important RNA structures, classifying viral proteins into families and investigating the origin and evolution of viruses. Contact: [email protected] Supplementary information: Supplementary data are available at Bioinformatics online. The references for this article can be found in the Supplementary Materia

Rheology, dispersion, and cure kinetics of epoxy filled with amine‐ and non‐functionalized reduced graphene oxide for composite manufacturing

This study evaluates the effect of plasma surface functionalization of reduced graphene oxide particles on the processing characteristics and homogeneity of dispersion of a bisphenol A‐(epichlorhydrin) epoxy matrix and amine‐based hardener with varying weight fractions from 0.00 to 1.50 wt%. It was observed that amine‐functionalized reduced graphene oxide leads to a more drastic viscosity increase of up to 18‐fold of the uncured suspensions and that its presence influences the conversion rates of the curing reaction. Optical microscopy of thin sections and transmission electron microscopy analysis showed that a more homogeneous dispersion of the particles could be achieved especially at higher weight fractions by using an appropriate surface functionalization. This knowledge can be used to define suitable processing conditions for epoxies with amine‐based hardeners depending on the loading and functionalization of graphene‐related particles.Bundesministerium für Bildung und ForschungDeutsche Forschungsgemeinschaf

Mechanical, thermal and electrical properties of epoxy nanocomposites with amine-functionalized reduced graphene oxide via plasma treatment

A suitable functionalization of graphene and its derivatives can further enhance the material properties of nanocomposites. In contrast to chemical functionalization methods that have been extensively researched, functionalization by plasma treatment is relatively unexplored. In this work, we compare the mechanical, thermal and electrical characteristics of an epoxy matrix incorporating loadings from 0.00 to 1.50 wt% of non-functionalized (rGO) and amine-functionalized reduced graphene oxide (frGO) for which the functionalization is realized by plasma processing. No significant difference between the rGO- and frGO-including nanocomposites was observed with respect to the stiffness, strength, specific heat capacity, coefficient of thermal expansion and electrical conductivity. Yet, the composites with 1.50 wt% frGO (rGO) exhibited a thermal conductivity that was 27% (20%) higher than the neat polymer due to the enhanced interface, which enabled a better transfer of heat. In addition, a considerable increase in the specific heat capacity and thermal conductivity was established with rising temperatures. This information will facilitate the choice of materials depending on the loading and functionalization of graphene materials for composite applications with an epoxy matrix.German Federal Ministry of Education and Research (BMBF

Network Archaeology: Uncovering Ancient Networks from Present-day Interactions

Often questions arise about old or extinct networks. What proteins interacted in a long-extinct ancestor species of yeast? Who were the central players in the Last.fm social network 3 years ago? Our ability to answer such questions has been limited by the unavailability of past versions of networks. To overcome these limitations, we propose several algorithms for reconstructing a network's history of growth given only the network as it exists today and a generative model by which the network is believed to have evolved. Our likelihood-based method finds a probable previous state of the network by reversing the forward growth model. This approach retains node identities so that the history of individual nodes can be tracked. We apply these algorithms to uncover older, non-extant biological and social networks believed to have grown via several models, including duplication-mutation with complementarity, forest fire, and preferential attachment. Through experiments on both synthetic and real-world data, we find that our algorithms can estimate node arrival times, identify anchor nodes from which new nodes copy links, and can reveal significant features of networks that have long since disappeared.Comment: 16 pages, 10 figure

Propiedades puzolánicas de desechos de la industria azucarera (segunda parte)

Results of studies conducted in lime pozzolana pastes are introduced in this paper. The pozzolana was sourced from Sugar Cane Baggasse Ash (CBC) and Sugar Cane Straw Ash (CPC). The hydration of this binder was carefully monitored by means of instrumental techniques with the aim of describing the kinetics of the reaction.Se presentan los resultados de estudios realizados en pastas fabricadas con un aglomerante del tipo calpuzolana, utilizando cenizas de paja de caña (CPC) y cenizas de bagazo de caña (CBC) como puzolanas. Se muestran los estudios que caracterizan la reacción de hidratación desarrollada en este tipo de aglomerante. La evaluación realizada, utilizando diferentes técnicas instrumentales, permitieron estudiar y comprender la cinética de la reacción