Spitzer spectral line mapping of supernova remnants: I. Basic data and principal component analysis

We report the results of spectroscopic mapping observations carried out toward small (1 x 1 arcmin) regions within the supernova remnants W44, W28, IC443, and 3C391 using the Infrared Spectrograph of the Spitzer Space Telescope. These observations, covering the 5.2 - 37 micron spectral region, have led to the detection of a total of 15 fine structure transitions of Ne+, Ne++, Si+, P+, S, S++, Cl+, Fe+, and Fe++; the S(0) - S(7) pure rotational lines of molecular hydrogen; and the R(3) and R(4) transitions of hydrogen deuteride. In addition to these 25 spectral lines, the 6.2, 7.7, 8.6, 11.3 and 12.6 micron PAH emission bands were also observed. Most of the detected line transitions have proven strong enough to map in several sources, providing a comprehensive picture of the relative distribution of the various line emissions observable in the Spitzer/IRS bandpass. A principal component analysis of the spectral line maps reveals that the observed emission lines fall into five distinct groups, each of which may exhibit a distinct spatial distribution: (1) lines of S and H2 (J > 2); (2) the H2 S(0) line; (3) lines of ions with appearance potentials less than 13.6 eV; (4) lines of ions with appearance potentials greater than 13.6 eV, not including S++; (5) lines of S++. Lines of group (1) likely originate in molecular material subject to a slow, nondissociative shock that is driven by the overpressure within the supernova remnant, and lines in groups (3) - (5) are associated primarily with dissociative shock fronts with a range of (larger) shock velocities. The H2 S(0) line shows a low-density diffuse emission component, and - in some sources - a shock-excited component.Comment: 43 pages, including 21 figures. Accepted for publication in Ap

Distribution of Water Vapor in Molecular Clouds

We report the results of a large-area study of water vapor along the Orion Molecular Cloud ridge, the purpose of which was to determine the depth-dependent distribution of gas-phase water in dense molecular clouds. We find that the water vapor measured toward 77 spatial positions along the face-on Orion ridge, excluding positions surrounding the outflow associated with BN/KL and IRc2, display integrated intensities that correlate strongly with known cloud surface tracers such as CN, C2H, 13CO J =5-4, and HCN, and less well with the volume tracer N2H+. Moreover, at total column densities corresponding to Av < 15 mag., the ratio of H2O to C18O integrated intensities shows a clear rise approaching the cloud surface. We show that this behavior cannot be accounted for by either optical depth or excitation effects, but suggests that gas-phase water abundances fall at large Av. These results are important as they affect measures of the true water-vapor abundance in molecular clouds by highlighting the limitations of comparing measured water vapor column densities with such traditional cloud tracers as 13CO or C18O. These results also support cloud models that incorporate freeze-out of molecules as a critical component in determining the depth-dependent abundance of water vapor

SWAS and Arecibo observations of H2O and OH in a diffuse cloud along the line-of-sight to W51

Observations of W51 with the Submillimeter Wave Astronomy Satellite (SWAS) have yielded the first detection of water vapor in a diffuse molecular cloud. The water vapor lies in a foreground cloud that gives rise to an absorption feature at an LSR velocity of 6 km/s. The inferred H2O column density is 2.5E+13 cm-2. Observations with the Arecibo radio telescope of hydroxyl molecules at ten positions in W51 imply an OH column density of 8E+13 cm-2 in the same diffuse cloud. The observed H2O/OH ratio of ~ 0.3 is significantly larger than an upper limit derived previously from ultraviolet observations of the similar diffuse molecular cloud lying in front of HD 154368. The observed variation in H2O/OH likely points to the presence in one or both of these clouds of a warm (T > 400) gas component in which neutral-neutral reactions are important sources of OH and/or H2O.Comment: 15 pages (AASTeX) including 4 (eps) figures. To appear in the Astrophysical Journa

Spitzer spectral line mapping of protostellar outflows: I. Basic data and outflow energetics

We report the results of spectroscopic mapping observations carried out toward protostellar outflows in the BHR71, L1157, L1448, NGC 2071, and VLA 1623 molecular regions using the Infrared Spectrograph (IRS) of the Spitzer Space Telescope. These observations, covering the 5.2 - 37 micron spectral region, provide detailed maps of the 8 lowest pure rotational lines of molecular hydrogen and of the [SI] 25.25 micron and [FeII] 26.0 micron fine structure lines. The molecular hydrogen lines, believed to account for a large fraction of the radiative cooling from warm molecular gas that has been heated by a non-dissociative shock, allow the energetics of the outflows to be elucidated. Within the regions mapped towards these 5 outflow sources, total H2 luminosities ranging from 0.02 to 0.75 L(solar) were inferred for the sum of the 8 lowest pure rotational transitions. By contrast, the much weaker [FeII] 26.0 micron fine structure transition traces faster, dissociative shocks; here, only a small fraction of the fast shock luminosity emerges as line radiation that can be detected with Spitzer/IRS.Comment: 38 pages including 17 figures. Accepted for publication in Ap

Detection of Extended Hot Water in the Outflow from NGC 2071

We report the results of spectroscopic mapping observations carried out toward a ~1 min x 1 min region within the northern lobe of the outflow from NGC 2071 using the Infrared Spectrograph (IRS) of the Spitzer Space Telescope. These observations covered the 5.2-37 um spectral region and have led to the detection of a number of ionic, atomic, and molecular lines, including fine-structure emission of Si+, Fe+, S++, S, the S(0)-S(7) pure rotational lines of H2, the R(3) and R(4) transitions of HD, and at least 11 transitions of H2O. In addition, the 6.2, 7.4, 7.6, 7.9, 8.6 and 11.3 um PAH emission bands were also observed and several transitions of OH were tentatively detected. Most of the detected line transitions were strong enough to map including, for the first time, three transitions of hot H2O. We find that: (1) the water emission is extended; (2) the extended emission is aligned with the outflow; and, (3) the spatial distribution of the water emission generally follows that observed for H2. Based on the measured line intensities, we derive an HD abundance relative to H2 of 1.1-1.8 10^-5 and an H2O number density of 12-2 cm^3. The H2 density in the water-emitting region is not well constrained by our observations, but is likely between 3 10^4 and 10^6 cm^3, yielding an H2O abundance relative to H2 of between 2 10^-5 and 6 10^-4. Future observations planned for the Herschel Space Observatory should greatly improve the density estimate, and thus our knowledge of the H2O abundance, for the water-emitting regions reported here. Finally, we note a possible departure from the H2O ortho-to-para ratio of 3:1 expected for water formed in hot post-shocked gas, suggesting that a significant fraction of the water vapor we detect may arise from H2O sputtered from cold dust grains.Comment: 35 pages, 15 figures, 4 tables, accepted for publication in Ap

Water, O2 and Ice in Molecular Clouds

We model the temperature and chemical structure of molecular clouds as a function of depth into the cloud, assuming a cloud of constant density n illuminated by an external FUV (6 eV < E < 13.6 eV) flux G_0 (scaling factor in multiples of the local interstellar field). Extending previous photodissociation region models, we include the freezing of species, simple grain surface chemistry, and desorption (including FUV photodesorption) of ices. We also treat the opaque cloud interior with time-dependent chemistry. Here, under certain conditions, gas phase elemental oxygen freezes out as water ice and the elemental C/O abundance ratio can exceed unity, leading to complex carbon chemistry. Gas phase H2O and O2 peak in abundance at intermediate depth into the cloud, roughly A_V~3-8 from the surface, the depth proportional to ln(G_0/n). Closer to the surface, molecules are photodissociated. Deeper into the cloud, molecules freeze to grain surfaces. At intermediate depths photodissociation rates are attenuated by dust extinction, but photodesorption prevents total freezeout. For G_0 < 500, abundances of H2O and O2 peak at values ~10^(-7), producing columns ~10^(15) per cm^2, independent of G_0 and n. The peak abundances depend primarily on the product of the photodesorption yield of water ice and the grain surface area per H nucleus. At higher values of G_0, thermal desorption of O atoms from grains enhances the gas phase H2O peak abundance and column slightly, whereas the gas phase O2 peak abundance rises to ~10^(-5) and the column to ~2x10^(16) per cm^2. We present simple analytic equations for the abundances as a function of depth which clarify the dependence on parameters. The models are applied to observations of H2O, O2, and water ice in a number of sources, including B68, NGC 2024, and Rho Oph.Comment: 70 pages including 17 figure

Herschel Search for O_2 toward the Orion Bar

We report the results of a search for molecular oxygen (O_2) toward the Orion Bar, a prominent photodissociation region at the southern edge of the H II region created by the luminous Trapezium stars. We observed the spectral region around the frequency of the O_2 NJ = 33-12 transition at 487 GHz and the 5_(4)-3_(4) transition at 774 GHz using the Heterodyne Instrument for the Far-Infrared on the Herschel Space Observatory. Neither line was detected, but the 3σ upper limits established here translate to a total line-of-sight O2 column density <1.5 × 10^(16) cm^(–2) for an emitting region whose temperature is between 30 K and 250 K, or <1 × 10^(16) cm^(–2) if the O_2 emitting region is primarily at a temperature of ≲100 K. Because the Orion Bar is oriented nearly edge-on relative to our line of sight, the observed column density is enhanced by a factor estimated to be between 4 and 20 relative to the face-on value. Our upper limits imply that the face-on O_2 column density is less than 4 × 10^(15) cm^(–2), a value that is below, and possibly well below, model predictions for gas with a density of 10^(4)-10^(5) cm^(–3) exposed to a far-ultraviolet flux 10^4 times the local value, conditions inferred from previous observations of the Orion Bar. The discrepancy might be resolved if (1) the adsorption energy of O atoms to ice is greater than 800 K; (2) the total face-on A V of the Bar is less than required for O_2 to reach peak abundance; (3) the O_2 emission arises within dense clumps with a small beam filling factor; or (4) the face-on depth into the Bar where O_2 reaches its peak abundance, which is density dependent, corresponds to a sky position different from that sampled by our Herschel beams

Diversity of methyl halide-degrading microorganisms in oceanic and coastal waters

Methyl halides have a significant impact on atmospheric chemistry, particularly in the degradation of stratospheric ozone. Bacteria are known to contribute to the degradation of methyl halides in the oceans and marine bacteria capable of using methyl bromide and methyl chloride as sole carbon and energy source have been isolated. A genetic marker for microbial degradation of methyl bromide ( cmuA ) was used to examine the distribution and diversity of these organisms in the marine environment. Three novel marine clades of cmuA were identified in unamended seawater and in marine enrichment cultures degrading methyl halides. Two of these cmuA clades are not represented in extant bacteria, demonstrating the utility of this molecular marker in identifying uncultivated marine methyl halide-degrading bacteria. The detection of populations of marine bacteria containing cmuA genes suggests that marine bacteria employing the CmuA enzyme contribute to methyl halide cycling in the ocean