The impact of free-streaming on dwarf galaxy counts in low-density regions

We study the statistics of dwarf galaxy populations as a function of environment in cold dark matter (CDM) and warm dark matter (WDM; sterile neutrino model mass Ms = 7.1 keV; half-mode mass Mhm = 6.3 × 108 M☉; and thermal relic equivalent mass mth = 2.8 keV) cosmogonies, using the Evolution and Assembly of GaLaxies and their Environments (EAGLE) galaxy formation model in two counterpart simulations. We measure the abundance of dwarf galaxies within 3 Mpc of DM haloes with a present-day halo mass similar to the Milky Way, finding that the number of galaxies M∗ > 107 M☉ is nearly identical for WDM and CDM. However, the cumulative mass function becomes shallower for WDM at lower masses, yielding 50 per cent fewer dwarf galaxies of M∗ ≳ 105 M☉ than CDM. The suppression of low-mass halo counts in WDM increases significantly from high- to low-density regions for haloes in the [0.5, 2] × Mhm range. The fraction of haloes hosting resolvable galaxies (M∗ ≳ 105 M☉ ) also diverges from overdense to underdense regions for M > 2Mhm, as the increased collapse delay at small densities pushes the collapse to after the reionization threshold. However, the stellar mass of WDM haloes at [0.5, 2] × Mhm is 30 per cent higher per unit halo mass than CDM haloes in underdense regions. We conclude that the suppression of galaxies with M∗ ≳ 105 M☉ between WDM and CDM is independent of density: the suppression of halo counts and fraction of luminous haloes is balanced by an enhancement in stellar mass–halo mass relation

Ancient mammalian and plant DNA from Late Quaternary stalagmite layers at Solkota Cave, Georgia

Metagenomic analysis is a highly promising technique in paleogenetic research that allows analysis of the complete genomic make-up of a sample. This technique has successfully been employed to archaeological sediments, but possible leaching of DNA through the sequence limits interpretation. We applied this technique to the analysis of ancient DNA (aDNA) from Late Quaternary stalagmites from two caves in Western Georgia, Melouri Cave and Solkota. Stalagmites form closed systems, limiting the effect of leaching, and can be securely dated with U-series. The analyses of the sequence data from the Melouri Cave stalagmite revealed potential contamination and low preservation of DNA. However, the two Solkota stalagmites preserved ancient DNA molecules of mammals (bear, roe deer, bats) and plants (chestnut, hazelnut, flax). The aDNA bearing layers from one of the two Solkota stalagmites were dated to between ~84 ka and ~56 ka BP by U-series. The second Solkota stalagmite contained excessive detrital clay obstructing U-series dating, but it also contained bear bones with a minimum age of ~50 BP uncalibrated years and ancient DNA molecules. The preservation of authentic ancient DNA molecules in Late Quaternary speleothems opens up a new paleogenetic archive for archaeological, paleontological and paleoenvironmental research

Genome-scale sequencing and analysis of human, wolf, and bison DNA from 25,000-year-old sediment

Cave sediments have been shown to preserve ancient DNA but so far have not yielded the genome-scale information of skeletal remains. We retrieved and analyzed human and mammalian nuclear and mitochondrial environmental "shotgun" genomes from a single 25,000-year-old Upper Paleolithic sediment sample from Satsurblia cave, western Georgia:first, a human environmental genome with substantial basal Eurasian ancestry, which was an ancestral component of the majority of post-Ice Age people in the Near East, North Africa, and parts of Europe; second, a wolf environmental genome that is basal to extant Eurasian wolves and dogs and represents a previously unknown, likely extinct, Caucasian lineage; and third, a European bison environmental genome that is basal to present-day populations, suggesting that population structure has been substantially reshaped since the Last Glacial Maximum. Our results provide new insights into the Late Pleistocene genetic histories of these three species and demonstrate that direct shotgun sequencing of sediment DNA, without target enrichment methods, can yield genome-wide data informative of ancestry and phylogenetic relationships

Taphonomy and Zooarchaeology of the Upper Palaeolithic Cave of Dzudzuana, Republic of Georgia

We present the results of a detailed taphonomic and zooarchaeological study of the faunal remains from the Upper Palaeolithic layers of Dzudzuana Cave, Republic of Georgia. This study presents the first carefully analysed Upper Palaeolithic faunal assemblage from the southern Caucasus and thus serves as a significant point of reference for inter-regional studies of Upper Palaeolithic subsistence in Eurasia. A series of intra-site taphonomic comparisons are employed to reconstruct the depositional history of the bone assemblages within the different occupational phases at the site and to investigate subsistence, meat procurement and bone-processing strategies. Caucasian tur (Capra caucasica), aurochs (Bos primigenius) and steppe bison (Bison priscus) were the major prey species throughout the Upper Palaeolithic. Their frequencies do not change significantly over time, and nor does bone preservation vary by layer. The assemblage is characterised by significant densitymediated biases, caused by both human bone-processing behaviours and in situ post-burial bone attrition. Bone marrow extraction produced large numbers of unidentified bone fragments, many exhibiting green bone fractures. The density and size of bone assemblages and the extent of fragmentation indicate that Dzudzuana Cave was repeatedly occupied by Upper Palaeolithic foragers over many years. Skeletal part representation and butchery marks from all stages of carcass processing suggest that prey occasionally underwent field butchery. Intra-site taphonomic comparisons highlight uniform patterns of cultural and economic behaviours related to food procurement and processing strategies.Anthropolog

Genome-scale sequencing and analysis of human, wolf, and bison DNA from 25,000-year-old sediment

Cave sediments have been shown to preserve ancient DNA but so far have not yielded the genome-scale information of skeletal remains. We retrieved and analyzed human and mammalian nuclear and mitochondrial environmental "shotgun" genomes from a single 25,000-year-old Upper Paleolithic sediment sample from Satsurblia cave, western Georgia:first, a human environmental genome with substantial basal Eurasian ancestry, which was an ancestral component of the majority of post-Ice Age people in the Near East, North Africa, and parts of Europe; second, a wolf environmental genome that is basal to extant Eurasian wolves and dogs and represents a previously unknown, likely extinct, Caucasian lineage; and third, a European bison environmental genome that is basal to present-day populations, suggesting that population structure has been substantially reshaped since the Last Glacial Maximum. Our results provide new insights into the Late Pleistocene genetic histories of these three species and demonstrate that direct shotgun sequencing of sediment DNA, without target enrichment methods, can yield genome-wide data informative of ancestry and phylogenetic relationships