Diet evolution and clade richness in Hexapoda : a phylogenetic study of higher taxa

Hexapoda, the insects and their relatives, includes over half of all described species. Because large proportions of this diversity cluster within a small set of phytophagous groups, dietary-substrates have been proposed to shape patterns of richness within the clade through antagonistic co-evolution and zones of ecological opportunity. Here we explore these processes in the context of a recent dated phylogeny of Hexapod families. Our results indicate phylogenetic clustering of specialized ecologies such as phytophagy and parasitism, but reveal no consistent associations between the use of particular dietary substrates and clade richness. We also find no evidence that diets expected to promote antagonistic co-evolution are consistently associated with elevated species richness, nor that sister clades differing in dietary state are associated with greater-than-expected differences in richness. We do, however, identify variation in the age of, and transition rates among, dietary states that are likely to play a role in the observed heterogeneity in richness among dietary classes. Based on these findings we suggest remaining circumspect about the generality of adaptive zones based on broad dietary groupings as an explanation for hexapod richness, and suggest that richness heterogeneity may be better explained by origination and transitions rates, and variation within dietary categories

The feeding ecology and behavior of wigeon (Anas penelope)

The aim of the project was to investigate the behavioural and physiological strategies used by wigeon to maximise their nutrient intake during winter. The reasons for selecting this species were its totally herbivorous diet, its simple digestive physiology and its small body size, all of which should lead to problems in gaining sufficient nutrition during the winter. The daily energy expenditure of this species was estimated from faecal output studies to be 150 kcal bird-1 day-1. This figure was compared with estimates for the larger grazing geese in order to assess the effect of body size on energy intake. The strategy of feeding for long periods (as much as 17 hours per day) to increase food intake seems to be very important in this species. Feeding site selection was investigated as this is an obvious way to increase nutrient intake. Wigeon show clear preference for particular feeding sites both in terms of amount and timing of use. Grass biomass, grass protein content and proximity to water are all important factors in site selection, reflecting the requirements for efficient feeding and safety from predators. Fertilization of a site increased its use by a factor of 2.5 A spectrophotometer for grass biomass assessment was designed and built for this part of the work. The behavioural changes resulting from differences in grassland type were studied. An increased biomass (and protein content) of grass on a site resulted in higher peck rates, slower walking rates and increased defaecation rates. These changes increased the efficiency of food intake on high biomass areas and allowed birds to exploit optimally a patchy food resource. The effect of grass height on peck rate was also investigated. Wigeon grazing has a great effect on the biomass, height and spring production of grass on their feeding sites. Of more importance is the fact that winter grazing can signficantly affect the protein content of grass in the spring. This effect is caused by the increased turnover rate of leaf material on grazed sites. The pressures leading to the tight feeding flocks, characteristic of this species, were studied. The flock-feeding strategy is likely to be important for nutrient intake since it leads to an increased protein intake in spring, and may also allow information regarding good feeding sites to be exchanged. Studies on vigilance activity showed that a decrease in vigilance time is important in small flock formation. This would have advantages for both feeding efficiency and safety from predators. The reduced likelihood of individual predation is also important in producing larger flocks. Finally, the physiology of wigeon digestion was studied. Wigeon have a very rapid throughput time and a low digestive efficiency. The storage of protein in the form of gut -tissue may also be important for breeding reserves in female birds

Spatial-temporal modelling of fMRI data through spatially regularized mixture of hidden process models.

Previous work investigated a range of spatio-temporal constraints for fMRI data analysis to provide robust detection of neural activation. We present a mixture-based method for the spatio-temporal modelling of fMRI data. This approach assumes that fMRI time series are generated by a probabilistic superposition of a small set of spatio-temporal prototypes (mixture components). Each prototype comprises a temporal model that explains fMRI signals on a single voxel and the model's "region of influence" through a spatial prior over the voxel space. As the key ingredient of our temporal model, the Hidden Process Model (HPM) framework proposed in Hutchinson et al. (2009) is adopted to infer the overlapping cognitive processes triggered by stimuli. Unlike the original HPM framework, we use a parametric model of Haemodynamic Response Function (HRF) so that biological constraints are naturally incorporated in the HRF estimation. The spatial priors are defined in terms of a parameterised distribution. Thus, the total number of parameters in the model does not depend on the number of voxels. The resulting model provides a conceptually principled and computationally efficient approach to identify spatio-temporal patterns of neural activation from fMRI data, in contrast to most conventional approaches in the literature focusing on the detection of spatial patterns. We first verify the proposed model in a controlled experimental setting using synthetic data. The model is further validated on real fMRI data obtained from a rapid event-related visual recognition experiment (Mayhew et al., 2012). Our model enables us to evaluate in a principled manner the variability of neural activations within individual regions of interest (ROIs). The results strongly suggest that, compared with occipitotemporal regions, the frontal ones are less homogeneous, requiring two HPM prototypes per region. Despite the rapid event-related experimental design, the model is capable of disentangling the perceptual judgement and motor response processes that are both activated in the frontal ROIs. Spatio-temporal heterogeneity in the frontal regions seems to be associated with diverse dynamic localizations of the two hidden processes in different subregions of frontal ROIs

The origins of species richness in the Hymenoptera: insights from a family-level supertree

<p>Abstract</p> <p>Background</p> <p>The order Hymenoptera (bees, ants, wasps, sawflies) contains about eight percent of all described species, but no analytical studies have addressed the origins of this richness at family-level or above. To investigate which major subtaxa experienced significant shifts in diversification, we assembled a family-level phylogeny of the Hymenoptera using supertree methods. We used sister-group species-richness comparisons to infer the phylogenetic position of shifts in diversification.</p> <p>Results</p> <p>The supertrees most supported by the underlying input trees are produced using matrix representation with compatibility (MRC) (from an all-in and a compartmentalised analysis). Whilst relationships at the tips of the tree tend to be well supported, those along the backbone of the tree (e.g. between Parasitica superfamilies) are generally not. Ten significant shifts in diversification (six positive and four negative) are found common to both MRC supertrees. The Apocrita (wasps, ants, bees) experienced a positive shift at their origin accounting for approximately 4,000 species. Within Apocrita other positive shifts include the Vespoidea (vespoid wasps/ants containing 24,000 spp.), Anthophila + Sphecidae (bees/thread-waisted wasps; 22,000 spp.), Bethylidae + Chrysididae (bethylid/cuckoo wasps; 5,200 spp.), Dryinidae (dryinid wasps; 1,100 spp.), and Proctotrupidae (proctotrupid wasps; 310 spp.). Four relatively species-poor families (Stenotritidae, Anaxyelidae, Blasticotomidae, Xyelidae) have undergone negative shifts. There are some two-way shifts in diversification where sister taxa have undergone shifts in opposite directions.</p> <p>Conclusions</p> <p>Our results suggest that numerous phylogenetically distinctive radiations contribute to the richness of large clades. They also suggest that evolutionary events restricting the subsequent richness of large clades are common. Problematic phylogenetic issues in the Hymenoptera are identified, relating especially to superfamily validity (e.g. "Proctotrupoidea", "Mymarommatoidea"), and deeper apocritan relationships. Our results should stimulate new functional studies on the causes of the diversification shifts we have identified. Possible drivers highlighted for specific adaptive radiations include key anatomical innovations, the exploitation of rich host groups, and associations with angiosperms. Low richness may have evolved as a result of geographical isolation, specialised ecological niches, and habitat loss or competition.</p

Vascular Origins of BOLD and CBV fMRI Signals: Statistical Mapping and Histological Sections Compared

Comparison of 3T blood oxygenation level dependent (BOLD) and cerebral blood volume (CBV) activation maps to histological sections enables the spatial discrimination of functional magnetic resonance imaging (fMRI) signal changes into different vascular compartments. We use a standard gradient echo–echo planar imaging technique to measure BOLD signal changes in the somatosensory cortex in response to whisker stimulation. Corresponding changes in CBV were estimated following the infusion of a super-paramagnetic contrast agent. We imaged in a tangential imaging plane that covered the cortical surface. Images were associated with post mortem histological sections showing both the surface vasculature and cytochrome oxidase stained whisker barrel cortex. We found a significant BOLD signal change in the large draining veins which occurred in the absence of a corresponding CBV change. Results suggest that in the venous drainage system, ~3mm distant from the area of activity, there is a robust change in blood oxygen saturation with little or no volume change. CBV changes are localised over the somatosensory barrel cortex and overlying arterial supply, supporting the theory that CBV changes are greater in the arterial than in the venous vasculature. This work investigating BOLD signal and underlying hemodynamics provides more information on the vascular origins of these important neuroimaging signals

Fossil gaps inferred from phylogenies alter the apparent nature of diversification in dragonflies and their relatives

<p>Abstract</p> <p>Background</p> <p>The fossil record has suggested that clade growth may differ in marine and terrestrial taxa, supporting equilibrial models in the former and expansionist models in the latter. However, incomplete sampling may bias findings based on fossil data alone. To attempt to correct for such bias, we assemble phylogenetic supertrees on one of the oldest clades of insects, the Odonatoidea (dragonflies, damselflies and their extinct relatives), using MRP and MRC. We use the trees to determine when, and in what clades, changes in taxonomic richness have occurred. We then test whether equilibrial or expansionist models are supported by fossil data alone, and whether findings differ when phylogenetic information is used to infer gaps in the fossil record.</p> <p>Results</p> <p>There is broad agreement in family-level relationships between both supertrees, though with some uncertainty along the backbone of the tree regarding dragonflies (Anisoptera). "Anisozygoptera" are shown to be paraphyletic when fossil information is taken into account. In both trees, decreases in net diversification are associated with species-poor extant families (Neopetaliidae, Hemiphlebiidae), and an upshift is associated with Calopterygidae + Polythoridae. When ghost ranges are inferred from the fossil record, many families are shown to have much earlier origination dates. In a phylogenetic context, the number of family-level lineages is shown to be up to twice as high as the fossil record alone suggests through the Cretaceous and Cenozoic, and a logistic increase in richness is detected in contrast to an exponential increase indicated by fossils alone.</p> <p>Conclusions</p> <p>Our analysis supports the notion that taxa, which appear to have diversified exponentially using fossil data, may in fact have diversified more logistically. This in turn suggests that one of the major apparent differences between the marine and terrestrial fossil record may simply be an artifact of incomplete sampling. Our results also support previous notions that adult colouration plays an important role in odonate radiation, and that Anisozygoptera should be grouped in a single inclusive taxon with Anisoptera, separate from Zygoptera.</p

Comparing life histories across taxonomic groups in multiple dimensions: how mammal-like are insects?

Explaining variation in life histories remains a major challenge because they are multi-dimensional and there are many competing explanatory theories and paradigms. An influential concept in life history theory is the ’fast-slow continuum’, exemplified by mammals. Determining the utility of such concepts across taxonomic groups requires comparison of the groups’ life histories in multidimensional space. Insects display enormous species richness and phenotypic diversity, but testing hypotheses like the ’fast-slow continuum’ has been inhibited by incomplete trait data. We use phylogenetic imputation to generate complete datasets of seven life history traits in orthopterans (grasshoppers and crickets) and examine the robustness of these imputations for our findings. Three phylogenetic principal components explain 83-96% of variation in these data. We find consistent evidence of an axis mostly following expectations of a ’fast-slow continuum’, except that ’slow’ species produce larger, not smaller, clutches of eggs. We show that the principal axes of variation in orthopterans and reptiles are mutually explanatory, as are those of mammals and birds. Essentially, trait covariation in Orthoptera, with ’slow’ species producing larger clutches, is more reptile-like than mammal-or-bird-like. We conclude that the ’fast-slow continuum’ is less pronounced in Orthoptera than in birds and mammals, reducing the universal relevance of this pattern, and the theories that predict it