Soil organic carbon and root distribution in a temperate arable agroforestry system

Aim To determine, for arable land in a temperate area, the effect of tree establishment and intercropping treatments, on the distribution of roots and soil organic carbon to a depth of 1.5 m. Methods A poplar (Populus sp.) silvoarable agroforestry experiment including arable controls was established on arable land in lowland England in 1992. The trees were intercropped with an arable rotation or bare fallow for the first 11 years, thereafter grass was allowed to establish. Coarse and fine root distributions (to depths of up to 1.5 m and up to 5 m from the trees) were measured in 1996, 2003, and 2011. The amount and type of soil carbon to 1.5 m depth was also measured in 2011. Results The trees, initially surrounded by arable crops rather than fallow, had a deeper coarse root distribution with less lateral expansion. In 2011, the combined length of tree and understorey vegetation roots was greater in the agroforestry treatments than the control, at depths below 0.9 m. Between 0 and 1.5 m depth, the fine root carbon in the agroforestry treatment (2.56 t ha-1) was 79% greater than that in the control (1.43 t ha-1). Although the soil organic carbon in the top 0.6 m under the trees (161 t C ha-1) was greater than in the control (142 t C ha-1), a tendency for smaller soil carbon levels beneath the trees at lower depths, meant that there was no overall tree effect when a 1.5 m soil depth was considered. From a limited sample, there was no tree effect on the proportion of recalcitrant soil organic carbon. Conclusions The observed decline in soil carbon beneath the trees at soil depths greater than 60 cm, if observed elsewhere, has important implication for assessments of the role of afforestation and agroforestry in sequestering carbon

Brane Gas Inflation

We consider the brane gas picture of the early universe. At later stages, when there are no winding modes and the background is free to expand, we show that a moving 3-brane, which we identify with our universe, can inflate even though it is radiation-dominated. The crucial ingredients for successful inflation are the coupling to the dilaton and the equation of state of the bulk. If we suppose the brane initially forms in a collision of higher-dimensional branes, then the spectrum of primordial density fluctuations naturally has a thermal origin.Comment: 4 pages, 1 figur

Soil carbon changes after establishing woodland and agroforestry trees in a grazed pasture

This study determined the effect of two tree planting methods (woodland and a silvopastoral agroforestry system) on the soil bulk density and organic carbon content of a grassland site in lowland England. Soil organic carbon was measured in pasture, silvopastoral tree, and woodland treatments at six depths representative of 0–150 cm. Fourteen years after tree planting, the organic carbon content in the surface soil layer (0–10 cm) was greatest in the pasture (6.0 g 100 g− 1) and least in the woodland (4.6 g 100 g− 1); the value (5.3 g 100 g− 1) below the silvopastoral trees was intermediate. In the 10–20 cm layer, the organic carbon content in the woodland was 13% lower than the pasture. No treatment effects on soil carbon were detected below 20 cm. Possible reasons for the decline in surface soil carbon include a decline in grass cover and reduced soil water content. Measurements of above ground carbon storage by the trees indicated that tree planting increased overall carbon storage, with the silvopastoral system predicted to achieve a higher level of carbon storage than equivalent areas of separate woodland and pasture. A power analysis indicates that a prohibitively large number of replicates is needed to ensure a lower than 20% risk of falsely concluding no treatment differences at individual depth increments below 10 cm and cumulative depths extending below 40 cm

Atom chips on direct bonded copper substrates

We present the use of direct bonded copper (DBC) for the straightforward fabrication of high power atom chips. Atom chips using DBC have several benefits: excellent copper/substrate adhesion, high purity, thick (> 100 microns) copper layers, high substrate thermal conductivity, high aspect ratio wires, the potential for rapid (< 8 hr) fabrication, and three dimensional atom chip structures. Two mask options for DBC atom chip fabrication are presented, as well as two methods for etching wire patterns into the copper layer. The wire aspect ratio that optimizes the magnetic field gradient as a function of power dissipation is determined to be 0.84:1 (height:width). The optimal wire thickness as a function of magnetic trapping height is also determined. A test chip, able to support 100 A of current for 2 s without failing, is used to determine the thermal impedance of the DBC. An assembly using two DBC atom chips to provide magnetic confinement is also shown.Comment: 8 pages, 5 figure

The Political Economy of Deforestation in the Tropics

Tropical deforestation accounts for almost one-fifth of greenhouse gas emissions worldwide and threatens the world's most diverse ecosystems. The prevalence of illegal forest extraction in the tropics suggests that understanding the incentives of local bureaucrats and politicians who enforce forest policy may be critical to understanding tropical deforestation. We find support for this thesis using a novel satellite-based dataset that tracks annual changes in forest cover across eight years of institutional change in post-Soeharto Indonesia. Increases in the numbers of political jurisdictions are associated with increased deforestation and with lower prices in local wood markets, consistent with a model of Cournot competition between jurisdictions. Illegal logging increases dramatically in the years leading up to local elections, suggesting the presence of "political logging cycles". And, illegal logging and rents from unevenly distributed oil and gas revenues are short run substitutes, but this effect dissapears over time as political turnover occurs. The results illustrate how incentives faced by local government officials affect deforestation, and provide an example of how standard economic theories can explain illegal behavior.

Land use change and soil carbon pools: Evidence from a long-term silvopastoral

Multi-functional silvopastoral systems provide a wide range of services to human society including the regulation of nutrients and water in soils and the sequestration of atmospheric carbon dioxide (CO2). Although silvopastoral systems significantly contribute to enhance aboveground carbon (C) sequestration (e.g. C accumulation in woody plant biomass), their long-term effects on soil C pools are less clear. In this study we performed soil physical fractionation analyses to quantify the C pool of different aggregate fractions across three land use types including (1) silvopastoral system with ash trees (Fraxinus excelsior L.), (2) planted woodland with ash trees, and (3) permanent grassland, which were established in 1989 at Loughgall, Northern Ireland, UK. Our results show that 26 years after the conversion of permanent grassland to either silvopastoral or woodland systems, soil C (and N) stocks (0–20 cm depth) did not significantly change between the three land use types. We found, however, that permanent grassland soils were associated with significantly higher C pools (g C kg−1 soil; P 2 mm) whereas soil C pools of the micro-aggregate (53–250 μm) and silt and clay (< 53 μm) fractions were significantly higher in the silvopastoral and woodland systems (P < 0.05). A key finding of this study is that while tree planting on permanent grassland may not contribute to greater soil C stocks it may, in the long-term, increase the C pool of more stable (recalcitrant) soil micro-aggregate and silt and clay fractions, which could be more resilient to environmental change

A 3D searchable database of transgenic zebrafish gal4 and cre lines for functional neuroanatomy studies

Citation: Marquart, G. D., Tabor, K. M., Brown, M., Strykowski, J. L., Varshney, G. K., LaFave, M. C., . . . Burgess, H. A. (2015). A 3D searchable database of transgenic zebrafish gal4 and cre lines for functional neuroanatomy studies. Frontiers in Neural Circuits, 9(November), 1-17. doi:10.3389/fncir.2015.00078Transgenic methods enable the selective manipulation of neurons for functional mapping of neuronal circuits. Using confocal microscopy, we have imaged the cellular-level expression of 109 transgenic lines in live 6 day post fertilization larvae, including 80 Gal4 enhancer trap lines, 9 Cre enhancer trap lines and 20 transgenic lines that express fluorescent proteins in defined gene-specific patterns. Image stacks were acquired at single micron resolution, together with a broadly expressed neural marker, which we used to align enhancer trap reporter patterns into a common 3-dimensional reference space. To facilitate use of this resource, we have written software that enables searching for transgenic lines that label cells within a selectable 3-dimensional region of interest (ROI) or neuroanatomical area. This software also enables the intersectional expression of transgenes to be predicted, a feature which we validated by detecting cells with co-expression of Cre and Gal4. Many of the imaged enhancer trap lines show intrinsic brain-specific expression. However, to increase the utility of lines that also drive expression in non-neuronal tissue we have designed a novel UAS reporter, that suppresses expression in heart, muscle, and skin through the incorporation of microRNA binding sites in a synthetic 3? untranslated region. Finally, we mapped the site of transgene integration, thus providing molecular identification of the expression pattern for most lines. Cumulatively, this library of enhancer trap lines provides genetic access to 70% of the larval brain and is therefore a powerful and broadly accessible tool for the dissection of neural circuits in larval zebrafish. © 2015 Marquart, Tabor, Brown, Strykowski, Varshney, LaFave, Mueller, Burgess, Higashijima and Burgess

Glucose production, gluconeogenesis, and hepatic tricarboxylic acid cycle fluxes measured by nuclear magnetic resonance analysis of a single glucose derivative

A triple-tracer method was developed to provide absolute fluxes contributing to endogenous glucose production and hepatic tricarboxylic acid (TCA) cycle fluxes in 24-h-fasted rats by 2H and 13C nuclear magnetic resonance (NMR) analysis of a single glucose derivative. A primed, intravenous [3,4-13C2]glucose infusion was used to measure endogenous glucose production; intraperitoneal 2H2O (to enrich total body water) was used to quantify sources of glucose (TCA cycle, glycerol, and glycogen), and intraperitoneal [U-13C3] propionate was used to quantify hepatic anaplerosis, pyruvate cycling, and TCA cycle flux. Plasma glucose was converted to monoacetone glucose (MAG), and a single 2H and 13C NMR spectrum of MAG provided the following metabolic data (all in units of [mu]mol/kg/min; n=6): endogenous glucose production (40.4 ± 2.9), gluconeogenesis from glycerol (11.5 ± 3.5), gluconeogenesis from the TCA cycle (67.3 ± 5.6), glycogenolysis (1.0 ± 0.8), pyruvate cycling (154.4 ± 43.4), PEPCK flux (221.7 ± 47.6), and TCA cycle flux (49.1 ± 16.8). In a separate group of rats, glucose production was not different in the absence of 2H2O and [U-13C]propionate, demonstrating that these tracers do not alter the measurement of glucose turnover.http://www.sciencedirect.com/science/article/B6W9V-4BWYNW7-2/1/140b73c9df39bb7829a8519979c37a6

The Relationship of Visceral Adipose Tissue with Markers of Energy Homeostasis Following Weight-Loss

Excess levels of adipose tissue, in particular visceral adipose tissue (VAT), is closely associated with the metabolic syndrome and dysregulation of energy homeostasis. It is hypothesized that leptin resistance results in overconsumption of calories and reduced satiety. Recently, brain derived neurotrophic factor (BDNF), beyond functioning in learning and memory, is shown to play a role in energy homeostasis via its positive satiety effects on the hypothalamus. However, it remains to be elucidated how changes in visceral adipose tissue are associated with changes in circulating leptin and BDNF after weight-loss. PURPOSE: To identify changes in adiposity and circulating leptin and BDNF following a 3-month weight-loss program. METHODS: Sixty-five obese (mean±SEM; age=47.9±1.1 years; BMI=34.5±0.8 kg/m2;), men and women completed a 3-month weight-loss program that consisted of a reduced energy intake of 1200-1500 kcals/day using a high-volume low-calorie diet combined with a progressive walking program to target 300 min/wk. Fasted (12 hr) blood samples were collected at baseline and post-weight-loss (3 months) and assayed for concentrations of glucose, insulin, BDNF, and leptin. Using DXA, total VAT and subcutaneous (SubQ) adipose tissue mass were measured at baseline and post-weight-loss (3 months). To identify significant changes over time, ANOVA with repeated measures was performed with significance set at p\u3c0.05. RESULTS: Following the 3-month weight-loss program, both BMI and HOMA-IR were significantly reduced 9.3% and 49%, respectively. The reduction in BMI and HOMA-IR were matched by a significant reduction in both VAT (-658 g; -33%, p\u3c0.001) and SubQ (-367 g; -17%, p\u3c0.001). Interestingly, leptin was reduced and BDNF was increased by 43% (p\u3c0.001) and 42% (p=0.011), respectively. Linear regression revealed that changes in VAT were associated with changes in leptin (b=0.298, p=0.026), but not with BDNF (b=0.027, p=0.896). CONCLUSION: This study shows that the reduction in VAT, by caloric restriction and physical activity, was associated with the reduction in circulating leptin concentrations, but not with changes in BDNF. Changes in leptin and BDNF may be in part responsible for the normalization of the energy homeostasis observed after weight-loss; however, changes in BDNF may be independent of VAT