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Joint tracking of manoeuvring targets and classification of their manoeuvrability
RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are.Semi-Markov models are a generalisation of Markov models that explicitly model the state-dependent sojourn time distribution, the time for which the system remains in a given state. Markov models result in an exponentially distributed sojourn time, while semi-Markov models make it possible to define the distribution explicitly. Such models can be used to describe the behaviour of manoeuvring targets, and particle filtering can then facilitate tracking. An architecture is proposed that enables particle filters to be both robust and efficient when conducting joint tracking and classification. It is demonstrated that this approach can be used to classify targets on the basis of their manoeuvrability.Peer Reviewe
Estimating the parameters of dynamical systems from Big Data using Sequential Monte Carlo samplers
MapReduce Particle Filtering with Exact Resampling and Deterministic Runtime
Particle filtering is a numerical Bayesian technique that has great potential for solving sequential estimation problems involving non-linear and non-Gaussian models. Since the estimation accuracy achieved by particle filters improves as the number of particles increases, it is natural to consider as many particles as possible. MapReduce is a generic programming model that makes it possible to scale a wide variety of algorithms to Big data. However, despite the application of particle filters across many domains, little attention has been devoted to implementing particle filters using MapReduce. In this paper, we describe an implementation of a particle filter using MapReduce. We focus on a component that what would otherwise be a bottleneck to parallel execution, the resampling component. We devise a new implementation of this component, which requires no approximations, has spatial complexity and deterministic time complexity. Results demonstrate the utility of this new component and culminate in consideration of a particle filter with particles being distributed across processor cores
MapReduce particle filtering with exact resampling and deterministic runtime
Particle filtering is a numerical Bayesian technique that has great potential for solving sequential estimation problems involving non-linear and non-Gaussian models. Since the estimation accuracy achieved by particle filters improves as the number of particles increases, it is natural to consider as many particles as possible. MapReduce is a generic programming model that makes it possible to scale a wide variety of algorithms to Big data. However, despite the application of particle filters across many domains, little attention has been devoted to implementing particle filters using MapReduce. In this paper, we describe an implementation of a particle filter using MapReduce. We focus on a component that what would otherwise be a bottleneck to parallel execution, the resampling component. We devise a new implementation of this component, which requires no approximations, has O(N) spatial complexity and deterministic O((logN)2) time complexity. Results demonstrate the utility of this new component and culminate in consideration of a particle filter with 224 particles being distributed across 512 processor cores
A psychology-driven computational analysis of political interviews
Can an interviewer influence the cooperativeness of an interviewee? The role of an interviewer in actualising a successful interview is an active field of social psychological research. A large-scale analysis of interviews, however, typically involves time-exorbitant manual tasks and considerable human effort. Despite recent advances in computational fields, many automated methods continue to rely on manually labelled training data to establish ground-truth. This reliance obscures explainability and hinders the mobility of analysis between applications. In this work, we introduce a cross-disciplinary approach to analysing interviewer efficacy. We suggest computational success measures as a transparent, automated, and reproducible alternative for pre-labelled data. We validate these measures with a small-scale study with human-responders. To study the interviewer’s influence on the interviewee we utilise features informed by social psychological theory to predict interview quality based on the interviewer’s linguistic behaviour. Our psychologically informed model significantly outperforms a bag-of-words model, demonstrating the strength of a cross-disciplinary approach toward the analysis of conversational data at scale
The blood-to-plasma ratio and predicted GABA<inf>A</inf>-binding affinity of designer benzodiazepines
Purpose: The number of benzodiazepines appearing as new psychoactive substances (NPS) is continually increasing. Information about the pharmacological parameters of these compounds is required to fully understand their potential effects and harms. One parameter that has yet to be described is the blood-to-plasma ratio. Knowledge of the pharmacodynamics of designer benzodiazepines is also important, and the use of quantitative structure–activity relationship (QSAR) modelling provides a fast and inexpensive method of predicting binding affinity to the GABAA receptor.
Methods: In this work, the blood-to-plasma ratios for six designer benzodiazepines (deschloroetizolam, diclazepam, etizolam, meclonazepam, phenazepam, and pyrazolam) were determined. A previously developed QSAR model was used to predict the binding affinity of nine designer benzodiazepines that have recently appeared.
Results: Blood-to-plasma values ranged from 0.57 for phenazepam to 1.18 to pyrazolam. Four designer benzodiazepines appearing since 2017 (fluclotizolam, difludiazepam, flualprazolam, and clobromazolam) had predicted binding affinities to the GABAA receptor that were greater than previously predicted binding affinities for other designer benzodiazepines.
Conclusions: This work highlights the diverse nature of the designer benzodiazepines and adds to our understanding of their pharmacology. The greater predicted binding affinities are a potential indication of the increasing potency of designer benzodiazepines appearing on the illicit drugs market
PinR mediates the generation of reversible population diversity in Streptococcus zooepidemicus
Opportunistic pathogens must adapt to and survive in a wide range of complex ecosystems. Streptococcus zooepidemicus is an opportunistic pathogen of horses and many other animals, including humans. The assembly of different surface architecture phenotypes from one genotype is likely to be crucial to the successful exploitation of such an opportunistic lifestyle. Construction of a series of mutants revealed that a serine recombinase, PinR, inverts 114 bp of the promoter of SZO_08560, which is bordered by GTAGACTTTA and TAAAGTCTAC inverted repeats. Inversion acts as a switch, controlling the transcription of this sortase-processed protein, which may enhance the attachment of S. zooepidemicus to equine trachea. The genome of a recently sequenced strain of S. zooepidemicus, 2329 (Sz2329), was found to contain a disruptive internal inversion of 7 kb of the FimIV pilus locus, which is bordered by TAGAAA and TTTCTA inverted repeats. This strain lacks pinR and this inversion may have become irreversible following the loss of this recombinase. Active inversion of FimIV was detected in three strains of S. zooepidemicus, 1770 (Sz1770), B260863 (SzB260863) and H050840501 (SzH050840501), all of which encoded pinR. A deletion mutant of Sz1770 that lacked pinR was no longer capable of inverting its internal region of FimIV. The data highlight redundancy in the PinR sequence recognition motif around a short TAGA consensus and suggest that PinR can reversibly influence the wider surface architecture of S. zooepidemicus, providing this organism with a bet-hedging solution to survival in fluctuating environments
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