The nucleolar organizer of the salivary gland polytene chromosomes as a measure of recent growth in laboratory-reared and field-collected Chironomus Spp. (Diptera: Chironomidae) larvae

Midge larvae possess giant polytene chromosomes. Genes on these chromosomes undergoing transcription are visible as puffs. The nucleolar organizer (NOR), an especially large puff, shrinks when a larva is stressed. Two feeding experiments were conducted to examine how NOR size changes as a function of Chironomus riparius growth. NOR size was linearly related to an individual\u27s recent growth rate, independent of its body size. Chironomids were collected from wetlands constructed with oil sands mine water and tailings (OSPM), and reference wetlands to evaluate the utility of the NOR as a field-based measure of larval growth and condition. Small larvae

Innate Recognition of Pheromone and Food Odors in Moths: A Common Mechanism in the Antennal Lobe?

The survival of an animal often depends on an innate response to a particular sensory stimulus. For an adult male moth, two categories of odors are innately attractive: pheromone released by conspecific females, and the floral scents of certain, often co-evolved, plants. These odors consist of multiple volatiles in characteristic mixtures. Here, we review evidence that both categories of odors are processed as sensory objects, and we suggest a mechanism in the primary olfactory center, the antennal lobe (AL), that encodes the configuration of these mixtures and may underlie recognition of innately attractive odors. In the pheromone system, mixtures of two or three volatiles elicit upwind flight. Peripheral changes are associated with behavioral changes in speciation, and suggest the existence of a pattern recognition mechanism for pheromone mixtures in the AL. Moths are similarly innately attracted to certain floral scents. Though floral scents consist of multiple volatiles that activate a broad array of receptor neurons, only a smaller subset, numerically comparable to pheromone mixtures, is necessary and sufficient to elicit behavior. Both pheromone and floral scent mixtures that produce attraction to the odor source elicit synchronous action potentials in particular populations of output (projection) neurons (PNs) in the AL. We propose a model in which the synchronous output of a population of PNs encodes the configuration of an innately attractive mixture, and thus comprises an innate mechanism for releasing odor-tracking behavior. The particular example of olfaction in moths may inform the general question of how sensory objects trigger innate responses

The Intersections of Race, Gender, Age, and Socioeconomic Status: Implications for Reporting Discrimination and Attributions to Discrimination.

This study employed an intersectional approach (operationalized as the combination of more than one social identity) to examine the relationship between aspects of social identity (i.e., race, gender, age, SES), self-reported level of mistreatment, and attributions for discrimination. Self-reported discrimination has been researched extensively and there is substantial evidence of its association with adverse physical and psychological health outcomes. Few studies, however, have examined the relationship of multiple demographic variables (including social identities) to overall levels self-reported mistreatment as well the selection of attributions for discrimination. A diverse community sample (N = 292; 42.12% Black; 47.26% male) reported on experiences of discrimination using the Everyday Discrimination Scale. General linear models were used to test the effect of sociodemographic characteristics (i.e., race, gender, age, SES) on total discrimination score and on attributions for discrimination. To test for intersectional relationships, we tested the effect of two-way interactions of sociodemographic characteristics on total discrimination score and attributions for discrimination. We found preliminary support for intersectional effects, as indicated by a significant race by age interaction on the selection of the race attribution for discrimination; gender by SES on the age attribution; age by gender on the education attribution; and race by SES on the economic situation attribution. Our study extends prior work by highlighting the importance of testing more than one factor as contributing to discrimination, particularly when examining to what sources individuals attribute discrimination

Recruitment of functionally distinct membrane proteins to chromatin mediates nuclear envelope formation in vivo

Formation of the nuclear envelope (NE) around segregated chromosomes occurs by the reshaping of the endoplasmic reticulum (ER), a reservoir for disassembled nuclear membrane components during mitosis. In this study, we show that inner nuclear membrane proteins such as lamin B receptor (LBR), MAN1, Lap2β, and the trans-membrane nucleoporins Ndc1 and POM121 drive the spreading of ER membranes into the emerging NE via their capacity to bind chromatin in a collaborative manner. Despite their redundant functions, decreasing the levels of any of these trans-membrane proteins by RNAi-mediated knockdown delayed NE formation, whereas increasing the levels of any of them had the opposite effect. Furthermore, acceleration of NE formation interferes with chromosome separation during mitosis, indicating that the time frame over which chromatin becomes membrane enclosed is physiologically relevant and regulated. These data suggest that functionally distinct classes of chromatin-interacting membrane proteins, which are present at nonsaturating levels, collaborate to rapidly reestablish the nuclear compartment at the end of mitosis

Genomic epidemiology of methicillin-resistant and -susceptible Staphylococcus aureus from bloodstream infections

Background: Bloodstream infections due to Staphylococcus aureus cause significant patient morbidity and mortality worldwide. Of major concern is the emergence and spread of methicillin-resistant S. aureus (MRSA) in bloodstream infections, which are associated with therapeutic failure and increased mortality. Methods: We generated high quality draft genomes from 323 S. aureus blood culture isolates from patients diagnosed with bloodstream infection at the Dartmouth-Hitchcock Medical Center, New Hampshire, USA in 2010–2018. Results: In silico detection of antimicrobial resistance genes revealed that 133/323 isolates (41.18%) carry horizontally acquired genes conferring resistance to at least three antimicrobial classes, with resistance determinants for aminoglycosides, beta-lactams and macrolides being the most prevalent. The most common resistance genes were blaZ and mecA, which were found in 262/323 (81.11%) and 104/323 (32.20%) isolates, respectively. Majority of the MRSA (102/105 isolates or 97.14%) identified using in vitro screening were related to two clonal complexes (CC) 5 and 8. The two CCs emerged in the New Hampshire population at separate times. We estimated that the time to the most recent common ancestor of CC5 was 1973 (95% highest posterior density (HPD) intervals: 1966–1979) and 1946 for CC8 (95% HPD intervals: 1924–1959). The effective population size of CC8 increased until the late 1960s when it started to level off until late 2000s. The levelling off of CC8 in 1968 coincided with the acquisition of SCCmec Type IV in majority of the strains. The plateau in CC8 also coincided with the acceleration in the population growth of CC5 carrying SCCmec Type II in the early 1970s, which eventually leveled off in the early 1990s. Lastly, we found evidence for frequent recombination in the two clones during their recent clonal expansion, which has likely contributed to their success in the population. Conclusions: We conclude that the S. aureus population was shaped mainly by the clonal expansion, recombination and co-dominance of two major MRSA clones in the last five decades in New Hampshire, USA. These results have important implications on the development of effective and robust strategies for intervention, control and treatment of life-threatening bloodstream infections

HUGIn: Hi-C Unifying Genomic Interrogator

Motivation: High throughput chromatin conformation capture (3C) technologies, such as Hi-C and ChIA-PET, have the potential to elucidate the functional roles of non-coding variants. However, most of published genome-wide unbiased chromatin organization studies have used cultured cell lines, limiting their generalizability. Results: We developed a web browser, HUGIn, to visualize Hi-C data generated from 21 human primary tissues and cell lines. HUGIn enables assessment of chromatin contacts both constitutive across and specific to tissue(s) and/or cell line(s) at any genomic loci, including GWAS SNPs, eQTLs and cis-regulatory elements, facilitating the understanding of both GWAS and eQTL results and functional genomics data. Availability and implementation: HUGIn is available at http://yunliweb.its.unc.edu/HUGIn. Contact: [email protected] or [email protected]. Supplementary information: Supplementary data are available at Bioinformatics online

Photometric Supernova Cosmology with BEAMS and SDSS-II

Supernova cosmology without spectroscopic confirmation is an exciting new frontier which we address here with the Bayesian Estimation Applied to Multiple Species (BEAMS) algorithm and the full three years of data from the Sloan Digital Sky Survey II Supernova Survey (SDSS-II SN). BEAMS is a Bayesian framework for using data from multiple species in statistical inference when one has the probability that each data point belongs to a given species, corresponding in this context to different types of supernovae with their probabilities derived from their multi-band lightcurves. We run the BEAMS algorithm on both Gaussian and more realistic SNANA simulations with of order 10^4 supernovae, testing the algorithm against various pitfalls one might expect in the new and somewhat uncharted territory of photometric supernova cosmology. We compare the performance of BEAMS to that of both mock spectroscopic surveys and photometric samples which have been cut using typical selection criteria. The latter typically are either biased due to contamination or have significantly larger contours in the cosmological parameters due to small data-sets. We then apply BEAMS to the 792 SDSS-II photometric supernovae with host spectroscopic redshifts. In this case, BEAMS reduces the area of the (\Omega_m,\Omega_\Lambda) contours by a factor of three relative to the case where only spectroscopically confirmed data are used (297 supernovae). In the case of flatness, the constraints obtained on the matter density applying BEAMS to the photometric SDSS-II data are \Omega_m(BEAMS)=0.194\pm0.07. This illustrates the potential power of BEAMS for future large photometric supernova surveys such as LSST.Comment: 25 pages, 15 figures, submitted to Ap

The Relationship between Squat Jump Performance and Sprint Profile in Collegiate Track and Field Athletes

The squat jump (SJ) necessitates the inter-play of various biomechanical components for better jump performance. Good sprint performance requires the inter-play of many of the same biomechanical components. Researchers have previously examined how the speed, force, velocity, and power interact during sprinting, but have yet to examine how these measures are associated with SJ performance measures. PURPOSE: Examine the relationship between squat jump performance measures and the sprint profile measurements of collegiate track and field athletes. METHODS: Twenty-five athletes (18 males and 7 females) completed two squat jump trials with a linear encoder attached to a 45 lbs. bar placed on the athlete’s upper back. Measures of interest during the concentric phase of the SJ included jump height, maximum force, maximum velocity, maximum power, and rate of force development. Athletes then completed two 30-meter acceleration sprints. The MySprint mobile application was used to acquire the athlete’s sprint profile and to assess maximal theoretical horizontal force, maximal theoretical velocity, optimal velocity, maximal theoretical power, maximal speed, maximal ratio of force, force-velocity slope, and decrease in ratio of force. The best trial was used for statistical analysis. Pearson’s or Spearman’s correlation coefficients were conducted between SJ measures and sprint profile measures. RESULTS: There was a positive correlation between SJ height and maximal speed (r = 0.402; p = 0.042). Maximal power during the SJ was positively correlated with maximal speed (r = 0.476; p = 0.014); optimal velocity (r = 0.469; p = 0.018); maximal theoretical power (r = 0.462; p = 0.018); maximal theoretical velocity (r = 0.452; p = 0.021); theoretical horizontal force (r = 0.431; p = 0.028); and maximal ratio force (r = 0.428; p = 0.029). Maximal velocity during the SJ was correlated with maximal speed (r = 0.519; p = 0.007); maximal theoretical velocity (r = 0.499; p = 0.010); optimal velocity (r = 0.486; p = 0.014); and maximal theoretical power (r = 0.484; p = 0.012). No other correlations were significant. CONCLUSION: Maximal velocity and power during the concentric phase of the SJ are moderately to strongly correlated with maximal sprinting speed, velocity, and power. SJ height is positively correlated with maximum sprint speed. There is a lack of significant correlations between other measures of the SJ and sprint profile measures. SJ power and velocity are correlated with sprint performance, therefore power and velocity improved through plyometric SJ training may be transferable to achieve better sprint performance