Evaluation of oscillating grids and orbital shakers as means to generate isotropic and homogeneous small-scale turbulence in laboratory enclosures commonly used in plankton studies

The effects of turbulent motion on planktonic organisms have mainly been studied in the laboratory with devices capable of generating controlled turbulent conditions. Owing to technical and logistical difficulties, thorough assessments of hydrodynamics in such experiments are not routinely made. In this study, we examined the suitability of two widely used systems to generate isotropic, homogeneous, and stationary turbulence in laboratory containers: oscillating grid devices with large stroke length and relatively low frequencies of oscillation and orbital shaker tables. Turbulent kinetic energy dissipation rates were estimated from velocity measurements made with acoustic Doppler velocimeters. Both systems were shown to generate isotropic conditions in a relatively broad range of dissipation rates. Grid-stirred tanks produce homogeneous turbulence in both the horizontal and vertical dimensions, as long as stroke length is comparable to the height of the container. Turbulence in orbital shakers is not completely homogeneous, as it depends on the distance to the wall and to the surface. Empirical models are derived as a tool for the calculation of dissipation rates in the two systems within the ranges and conditions examined in this study

[Corrigendum to] Effects of small-scale turbulence on lower trophic levels under different nutrient conditions [vol 32, pg 197, 2010]

Small-scale turbulence affects the pelagic food web and energy flow in marine systems and the impact is related to nutrient conditions and the assemblage of organisms present. We generated five levels of turbulence (2*10 29 to 1*10 24 W kg 21 ) in land-based mesocosms (volume 2.6 m 3 ) with and without additional nutrients (31:16:1 Si:N:P m M) to asses the effect of small-scale turbulence on the lower part of the pelagic food web under different nutrient conditions. The ecological influence of nutrients and small-scale turbulence on lower trophic levels was quantified using multivariate statistics (RDA), where nutrients accounted for 31.8% of the observed biological variation, while 7.2% of the variation was explained by small-scale turbulence and its interaction with nutrients. Chlorophyll a, primary production rates, bacterial production rates and diatom and dinoflagellate abundance were positively correlated to turbulence, regardless of nutrient conditions. Abundance of autotrophic flagellates, total phytoplankton and bacteria were positively correlated to turbulence only when nutrients were added. Impact of small-scale turbulence was related to nutrient con- ditions, with implications for oligotrophic and eutrophic situations. The effect on community level was also different compared to single species level. Microbial processes drive biogeochemical cycles, and nutrient-controlled effects of small-scale turbulence on such processes are relevant to foresee altered carbon flow in marine systems

Turnover time of fluorescent dissolved organic matter in the dark global ocean

Research articleMarine dissolved organic matter (DOM) is one of the largest reservoirs of reduced carbon on Earth. In the dark ocean (4200 m), most of this carbon is refractory DOM. This refractory DOM, largely produced during microbial mineralization of organic matter, includes humic-like substances generated in situ and detectable by fluorescence spectroscopy. Here we show two ubiquitous humic-like fluorophores with turnover times of 435±41 and 610±55 years, which persist significantly longer than the B350 years that the dark global ocean takes to renew. In parallel, decay of a tyrosine-like fluorophore with a turnover time of 379±103 years is also detected. We propose the use of DOM fluorescence to study the cycling of resistant DOM that is preserved at centennial timescales and could represent a mechanism of carbon sequestration (humic-like fraction) and the decaying DOM injected into the dark global ocean, where it decreases at centennial timescales (tyrosine-like fraction).Versión del editor10,015

Episodic meteorological and nutrient-load events as drivers of coastal planktonic ecosystem dynamics: a time-series analysis

In temperate coastal zones, episodic meteorological forcing can have a strong impact on the classical seasonal phytoplankton succession. Episodes of continental runoff and wind storms involve nutrient enrichment and turbulence, 2 factors that can promote primary production and alter the planktonic community species composition and size structure. We determined the joint influence of these 2 variables on the osmotrophic plankton of an oligotrophic NW Mediterranean open bay. We used an 8 yr long time series of monthly physical, chemical and biological water-column parameters, and we looked for correlations between these and several meteorological and physical high-frequency time series through cross-correlation analyses. Influence of river runoff in this particular location was found to be very important for phytoplankton dynamics, whereas no immediate response of bacterioplankton was detected. Resuspension events caused by waves had a secondary importance. Cross correlations allowed defining a sequence of responses to these types of forcing, from changes in water turbidity and salinity, to increases in phytoplankton and bacteria abundances through nutrient enrichments. The maximum response of the ecosystem in terms of chlorophyll a concentration lagged nutrient enrichment events by about 1 wk. A more detailed analysis was performed between June 2003 and June 2004, a period characterised by an intense drought in summer and by 6 strong meteorological events afterwards. The increase in the frequency of meteorological events during this period drove the system from heterotrophy to autotrophy. Our data stress the importance of episodic meteorological events in coastal planktonic communities

Coastal Mediterranean plankton stimulation dynamics through a dust storm event: an experimental simulation

An enhancement of aeolian inputs to the ocean due to a future increase in aridity in certain parts of the world is predicted from global change. We conducted an experimental simulation to assess the biological response of NW Mediterranean coastal surface waters to an episodic dust addition. On the assumption that planktonic growth was limited by phosphorus, dust effects were compared to those induced by equivalent enrichments of phosphate. The experiment analyzed the dynamics of several parameters during one week: inorganic nutrients, total and fractioned chlorophyll a, bacterial abundance, phytoplankton species composition, abundance of autotrophic and heterotrophic flagellates, particulate organic carbon and particulate organic nitrogen. The maximum addition of dust (0.5 g dust L(-1)) initiated an increase in bacterial abundance. After 48 h, bacterial numbers decreased due to a peak in heterotrophic flagellates and a significant growth of autotrophic organisms, mainly nanoflagellates but also diatoms, was observed. Conversely, lower inputs of dust (0.05 g dust L(-1)) and phosphate enrichments (0.5 mu mol PO(4)(3-) L(-1)) only produced increases in phototrophic nanoflagellates. In our experiment, dust triggered bacterial growth, changed phytoplankton dynamics and affected the ratio of autotrophic to heterotrophic biomass, adding to the variability in the sources that affect system dynamics, energy and carbon budgets and ultimately higher trophic levels of the coastal marine food web. (C) 2011 Elsevier Ltd. All rights reserved

Effects of small-scale turbulence on lower trophic levels under different nutrient conditions

Small-scale turbulence affects the pelagic food web and energy flow in marine systems and the impact is related to nutrient conditions and the assemblage of organisms present. We generated five levels of turbulence (2*10−9 to 1*10−4 W kg−1) in land-based mesocosms (volume 2.6 m3) with and without additional nutrients (31:16:1 Si:N:P μM) to asses the effect of small-scale turbulence on the lower part of the pelagic food web under different nutrient conditions. The ecological influence of nutrients and small-scale turbulence on lower trophic levels was quantified using multivariate statistics (RDA), where nutrients accounted for 31.8% of the observed biological variation, while 7.2% of the variation was explained by small-scale turbulence and its interaction with nutrients. Chlorophyll a, primary production rates, bacterial production rates and diatom and dinoflagellate abundance were positively correlated to turbulence, regardless of nutrient conditions. Abundance of autotrophic flagellates, total phytoplankton and bacteria were positively correlated to turbulence only when nutrients were added. Impact of small-scale turbulence was related to nutrient conditions, with implications for oligotrophic and eutrophic situations. The effect on community level was also different compared to single species level. Microbial processes drive biogeochemical cycles, and nutrient-controlled effects of small-scale turbulence on such processes are relevant to foresee altered carbon flow in marine systems

Antarctic sea ice region as a source of biogenic organic nitrogen in aerosols

Climate warming affects the development and distribution of sea ice, but at present the evidence of polar ecosystem feedbacks on climate through changes in the atmosphere is sparse. By means of synergistic atmospheric and oceanic measurements in the Southern Ocean near Antarctica, we present evidence that the microbiota of sea ice and sea ice-influenced ocean are a previously unknown significant source of atmospheric organic nitrogen, including low molecular weight alkyl-amines. Given the keystone role of nitrogen compounds in aerosol formation, growth and neutralization, our findings call for greater chemical and source diversity in the modelling efforts linking the marine ecosystem to aerosol-mediated climate effects in the Southern Ocean

A global database of dissolved organic matter (DOM) concentration measurements in coastal waters (CoastDOM v1)

Measurements of dissolved organic carbon (DOC), nitrogen (DON), and phosphorus (DOP) concentrations are used to characterize the dissolved organic matter (DOM) pool and are important components of biogeochemical cycling in the coastal ocean. Here, we present the first edition of a global database (CoastDOM v1; available at 10.1594/PANGAEA.964012, Lønborg et al., 2023) compiling previously published and unpublished measurements of DOC, DON, and DOP in coastal waters. These data are complemented by hydrographic data such as temperature and salinity and, to the extent possible, other biogeochemical variables (e.g. chlorophyll a, inorganic nutrients) and the inorganic carbon system (e.g. dissolved inorganic carbon and total alkalinity). Overall, CoastDOM v1 includes observations of concentrations from all continents. However, most data were collected in the Northern Hemisphere, with a clear gap in DOM measurements from the Southern Hemisphere. The data included were collected from 1978 to 2022 and consist of 62 338 data points for DOC, 20 356 for DON, and 13 533 for DOP. The number of measurements decreases progressively in the sequence DOC > DON > DOP, reflecting both differences in the maturity of the analytical methods and the greater focus on carbon cycling by the aquatic science community. The global database shows that the average DOC concentration in coastal waters (average ± standard deviation (SD): 182±314 µmolCL-1; median: 103 µmolCL-1) is 13-fold higher than the average coastal DON concentration (13.6±30.4 µmolNL-1; median: 8.0 µmolNL-1), which is itself 39-fold higher than the average coastal DOP concentration (0.34±1.11 µmolPL-1; median: 0.18 µmolPL-1). This dataset will be useful for identifying global spatial and temporal patterns in DOM and will help facilitate the reuse of DOC, DON, and DOP data in studies aimed at better characterizing local biogeochemical processes; closing nutrient budgets; estimating carbon, nitrogen, and phosphorous pools; and establishing a baseline for modelling future changes in coastal waters

A global database of dissolved organic matter (DOM) measurements in coastal waters (CoastDOM v1)

International audienceAbstract. The measurements of dissolved organic carbon (DOC), nitrogen (DON), and phosphorus (DOP) are used to characterize the dissolved organic matter (DOM) pool and are important components of biogeochemical cycling in the coastal ocean. Here, we present the first edition of a global database (CoastDOM v1; available at https://figshare.com/s/512289eb43c4f8e8eaef) compiling previously published and unpublished measurements of DOC, DON, and DOP collected in coastal waters. These data are complemented by hydrographic data such as temperature and salinity and, to the extent possible, other biogeochemical variables (e.g., Chlorophyll-a, inorganic nutrients) and the inorganic carbon system (e.g., dissolved inorganic carbon and total alkalinity). Overall, CoastDOM v1 includes observations from all continents however, most data were collected in the Northern Hemisphere, with a clear gap in coastal water DOM measurements from the Southern Hemisphere. The data included were collected from 1978 to 2022 and consist of 62339 data points for DOC, 20360 for DON and 13440 for DOP. The number of measurements decreases progressively in the sequence DOC > DON > DOP, reflecting both differences in the maturity of the analytical methods and the greater focus on carbon cycling by the aquatic science community. The global database shows that the average DOC concentration in coastal waters (average (standard deviation; SD): 182 (314) µmol C L−1; median: 103 µmol C L−1), is 13-fold greater than the average coastal DON concentrations (average (SD): 13.6 (30.4) µmol N L−1; median: 8.0 µmol N L−1), which was itself 39-fold greater than the average coastal DOP concentrations (average (SD): 0.34 ± 1.11 µmol P L−1; median: 0.18 µmol P L−1). This dataset will be useful to identify global spatial and temporal patterns in DOM and to facilitate reuse of DOC, DON and DOP data in studies aimed at better characterising local biogeochemical processes, closing nutrient budgets, estimating carbon, nitrogen and phosphorous pools, as well as identifying a baseline for modelling future changes in coastal waters