A grid-based map for the biogeographical regions of Europe

© Pensoft Publishers. Background Biogeographical units are widely adopted in ecological research and nature conservation management, even though biogeographical regionalisation is still under scientific debate. The European Environment Agency provided an official map of the European Biogeographical Regions (EBRs), which contains the official boundaries used in the Habitats and Birds Directives. However, these boundaries bisect cells in the official EU 10 km x 10 km grid used for many purposes, including reporting species and habitat data, meaning that 6881 cells overlap two or more regions. Therefore, superimposing the EBRs vector map over the grid creates ambiguities in associating some cells with European Biogeographical Regions. New information To provide an operational tool to unambiguously define the boundaries of the eleven European Biogeographical Regions, we provide a specifically developed raster map of Grid-Based European Biogeographical Regions (GB-EBRs). In this new map, the borders of the EBRs are reshaped to coherently match the standard European 10 km x 10 km grid imposed for reporting tasks by Article 17 of the Habitats Directive and used for many other datasets. We assign each cell to the EBR with the largest area within the cell

The subpopulation pattern of eel sperm is affected by post-activation time, hormonal treatment and thermal regime

[EN] There has been a marked reduction in natural stocks of eels (genus Anguilla) over the past 60 years, and the culture of eels is still based on the capture of very large quantities of juveniles. It is necessary to close the life cycle in captivity in order to ease the pressure on wild populations. The aims of the present study were to evaluate sperm subpopulations (through cluster analysis of computer-aided sperm analysis data) in the European eel (Anguilla anguilla) and to assess the effects of motility acquisition time after activation (i.e. at 30, 60 and 90 s), the thermal regimen (i.e. 10 degrees C (T10) or 15 degrees C (T15) and up to 20 degrees C, or constant at 20 degrees C (T20)) and hormonal treatments (i.e. human chorionic gonadotropin (hCG), recombinant (r) hCG or pregnant mare serum gonadotropin (PMSG)) on these subpopulations. In all cases, we obtained three subpopulations of spermatozoa: low velocity and linear (S1); high velocity with low linearity (S2); and high velocity and linear (S3; considered high quality). Total motility and S1 were affected by acquisition time; thus, 30 s is recommended as the standard time for motility acquisition. When eels were kept at 20 degrees C (T20), motility data fitted quadratic models, with the highest motility and proportion of S3 between Weeks 8 and 12 after the first injection. Lower temperatures (T10, T15) delayed spermiation and the obtaining of high-quality spermatozoa (S3), but did not seem to alter the spermiation process (similar subpopulation pattern). Conversely, the hormonal treatments altered both the dynamics of the subpopulation pattern and the onset of spermiation (with PMSG delaying it). Total motility and the yield of S3 with the widely used hCG treatment varied throughout the spermiation period. However, using rhCG allowed us to obtain high-quality and constant motility for most of the study (Weeks 7-20), and the S3 yield was also higher overall (61.8 +/- 1.3%; mean +/- s.e.m.) and more stable over time than the other hormonal treatments (averaging 53.0 +/- 1.4%). Using T20 and rhCG would be more economical and practical, allowing us to obtain a higher number of S3 spermatozoa over an extended time.This study was funded by the European Community's 7th Framework Program under the Theme 2 'Food, Agriculture and Fisheries, and Bio-technology', grant agreement no. 245257 (PRO-EEL) and Generalitat Valenciana (ACOMP/2012/086). VG and MCV have predoctoral grants from the Spanish Ministry of Economy and Competitiveness (AGL2010-16009) and Universitat Politecnica de Valencia (UPV) PAID Program (2011-S2-02-6521), respectively. DSP was supported by a contract cofinanced by Ministry of Science and Innovation (MICINN) and UPV (PTA2011-4948-I). FM-P was supported by the Ramon y Cajal program (MICINN, RYC-2008-02560).Gallego Albiach, V.; Vilchez Olivencia, MC.; Peñaranda, D.; Pérez Igualada, LM.; Herraez, MP.; Asturiano Nemesio, JF.; Martinez-Pastor, F. (2015). The subpopulation pattern of eel sperm is affected by post-activation time, hormonal treatment and thermal regime. Reproduction, Fertility and Development. 27(3):529-543. https://doi.org/10.1071/RD13198S52954327

Automated Mining of the ALMA Archive in the COSMOS Field (A(3)COSMOS). I. Robust ALMA Continuum Photometry Catalogs and Stellar Mass and Star Formation Properties for similar to 700 Galaxies at z=0.5-6

The rich information on (sub)millimeter dust continuum emission from distant galaxies in the public Atacama Large Millimeter/submillimeter Array (ALMA) archive is contained in thousands of inhomogeneous observations from individual PI-led programs. To increase the usability of these data for studies deepening our understanding of galaxy evolution, we have developed automated mining pipelines for the ALMA archive in the COSMOS field (A3COSMOS) that efficiently exploit the available information for large numbers of galaxies across cosmic time and keep the data products in sync with the increasing public ALMA archive: (a) a dedicated ALMA continuum imaging pipeline, (b) two complementary photometry pipelines for both blind source extraction and prior source fitting, (c) a counterpart association pipeline utilizing the multiwavelength data available (including quality assessment based on machine-learning techniques), (d) an assessment of potential (sub)millimeter line contribution to the measured ALMA continuum, and (e) extensive simulations to provide statistical corrections to biases and uncertainties in the ALMA continuum measurements. Application of these tools yields photometry catalogs with ~1000 (sub)millimeter detections (spurious fraction ~8%-12%) from over 1500 individual ALMA continuum images. Combined with ancillary photometric and redshift catalogs and the above quality assessments, we provide robust information on redshift, stellar mass, and star formation rate for ~700 galaxies at redshifts 0.5-6 in the COSMOS field (with undetermined selection function). The ALMA photometric measurements and galaxy properties are released publicly within our blind extraction, prior fitting, and galaxy property catalogs, plus the images. These products will be updated on a regular basis in the future.D.L., P.L., and E.S. acknowledge support and funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation program (grant agreement No. 694343). S.L. acknowledges funding from Deutsche Forschungsgemeinschaft (DFG) grant SCH 536/9-1. Part of this research was carried out within the Collaborative Research Centre 956, subproject A1, funded by the Deutsche Forschungsgemeinschaft (DFG)—project ID 184018867. We thank Annalisa Pillepich and the Max Planck Computing & Data Facility for very helpful computing cluster resource