Temperature Effects on Threshold Counterion Concentration to Induce Aggregation of fd Virus

We seek to determine the mechanism of like-charge attraction by measuring the temperature dependence of critical divalent counterion concentration ($\rm{C_{c}}$) for the aggregation of fd viruses. We find that an increase in temperature causes $\rm{C_c}$ to decrease, primarily due to a decrease in the dielectric constant ($\epsilon$) of the solvent. At a constant $\epsilon$, $\rm{C_c}$ is found to increase as the temperature increases. The effects of $T$ and $\epsilon$ on $\rm {C_{c}}$ can be combined to that of one parameter: Bjerrum length ($l_{B}$). $\rm{C_{c}}$ decreases exponentially as $l_{B}$ increases, suggesting that entropic effect of counterions plays an important role at the onset of bundle formation.Comment: 12 pages, 3 figure

Pilus distribution among lineages of group b <i>streptococcus</i>: an evolutionary and clinical perspective

&lt;b&gt;Background&lt;/b&gt;&lt;p&gt;&lt;/p&gt; Group B Streptococcus (GBS) is an opportunistic pathogen in both humans and bovines. Epidemiological and phylogenetic analyses have found strains belonging to certain phylogenetic lineages to be more frequently associated with invasive newborn disease, asymptomatic maternal colonization, and subclinical bovine mastitis. Pilus structures in GBS facilitate colonization and invasion of host tissues and play a role in biofilm formation, though few large-scale studies have estimated the frequency and diversity of the three pilus islands (PIs) across diverse genotypes. Here, we examined the distribution of pilus islands (PI) 1, 2a and 2b among 295 GBS strains representing 73 multilocus sequence types (STs) belonging to eight clonal complexes. PCR-based RFLP was also used to evaluate variation in the genes encoding pilus backbone proteins of PI-2a and PI-2b.&lt;p&gt;&lt;/p&gt; &lt;b&gt;Results&lt;/b&gt;&lt;p&gt;&lt;/p&gt; All 295 strains harbored one of the PI-2 variants and most human-derived strains contained PI-1. Bovine-derived strains lacked PI-1 and possessed a unique PI-2b backbone protein allele. Neonatal strains more frequently had PI-1 and a PI-2 variant than maternal colonizing strains, and most CC-17 strains had PI-1 and PI-2b with a distinct backbone protein allele. Furthermore, we present evidence for the frequent gain and loss of genes encoding certain pilus types.&lt;p&gt;&lt;/p&gt; &lt;b&gt;Conclusions&lt;/b&gt;&lt;p&gt;&lt;/p&gt; These data suggest that pilus combinations impact host specificity and disease presentation and that diversification often involves the loss or acquisition of PIs. Such findings have implications for the development of GBS vaccines that target the three pilus islands

A variant in LIN28B is associated with 2D:4D finger-length ratio, a putative retrospective biomarker of prenatal testosterone exposure

The ratio of the lengths of an individual's second to fourth digit (2D:4D) is commonly used as a noninvasive retrospective biomarker for prenatal androgen exposure. In order to identify the genetic determinants of 2D:4D, we applied a genome-wide association approach to 1507 11-year-old children from the Avon Longitudinal Study of Parents and Children (ALSPAC) in whom 2D:4D ratio had been measured, as well as a sample of 1382 12- to 16-year-olds from the Brisbane Adolescent Twin Study. A meta-analysis of the two scans identified a single variant in the LIN28B gene that was strongly associated with 2D:4D (rs314277: p = 4.1 108) and was subsequently independently replicated in an additional 3659 children from the ALSPAC cohort (p = 1.53 106). The minor allele of the rs314277 variant has previously been linked to increased height and delayed age at menarche, but in our study it was associated with increased 2D:4D in the direction opposite to that of previous reports on the correlation between 2D:4D and age at menarche. Our findings call into question the validity of 2D:4D as a simplistic retrospective biomarker for prenatal testosterone exposure

Using Bi-Weekly Surveys to Portray Adolescent Partnership Dynamics: Lessons From a Mobile Diary Study.

Partnership formation is an important developmental task for adolescents, but cross-sectional and periodic longitudinal studies have lacked the measurement precision to portray partnership stability and flux and to capture the range of adolescent partnership experiences. This article assesses the promises and challenges of using bi-weekly mobile diaries administered over the course of a year to study adolescent partnership dynamics. Descriptive findings illustrate the potential of bi-weekly diaries for both capturing the longitudinal complexity and fluidity of adolescent partnerships as well as for reducing retrospection biases. Results also underscore several challenges, including those posed by missing data, and highlight several strategies for maximizing participant engagement and reliably tracing adolescent partnerships

Towards Better Text Understanding and Retrieval through Kernel Entity Salience Modeling

This paper presents a Kernel Entity Salience Model (KESM) that improves text understanding and retrieval by better estimating entity salience (importance) in documents. KESM represents entities by knowledge enriched distributed representations, models the interactions between entities and words by kernels, and combines the kernel scores to estimate entity salience. The whole model is learned end-to-end using entity salience labels. The salience model also improves ad hoc search accuracy, providing effective ranking features by modeling the salience of query entities in candidate documents. Our experiments on two entity salience corpora and two TREC ad hoc search datasets demonstrate the effectiveness of KESM over frequency-based and feature-based methods. We also provide examples showing how KESM conveys its text understanding ability learned from entity salience to search

Photon collection from a trapped ion--cavity system

We present the design and implementation of a trapped ion cavity QED system. A single ytterbium ion is confined by a micron-scale ion trap inside a 2 mm optical cavity. The ion is coherently pumped by near resonant laser light while the cavity output is monitored as a function of pump intensity and cavity detuning. We observe a Purcell enhancement of scattered light into the solid angle subtended by the optical cavity, as well as a three-peak structure arising from strongly driving the atom. This system can be integrated into existing atom{photon quantum network protocols and is a pathway towards an efficient atom{photon quantum interface

The impact of greyscale inversion for nodule detection in an anthropomorphic chest phantom: a free-response observer study

Objective: The aim of this work was to assess the impact of greyscale inversion on nodule detection on poster- oanterior chest X-ray images. Previous work has attemp- ted this, with no consensus opinion formed. We assessed the value of “fast-flicking” between standard and inverted display modes for nodule detection. Methods: Six consultant radiologists (with 5–32 years’ reporting experience) completed an observer task under the free-response paradigm. An anthropomorphic chest phantom was loaded with 50 different configurations of simulated nodules (1–4 nodules per case) measuring 5, 8, 10 and 12mm in spherical diameter; each configuration represented a single case. In addition, 25 cases contained no nodules. Images were displayed in three modes: (i) standard, (ii) inverted and (iii) fast-flicking between standard and inverted display modes. Each observer completed the study in a different order of display (i, ii, iii) using a calibrated 5-megapixel monitor. Nodules were localized with mouse clicks and ratings assigned using a 1–10 discrete slider-bar confidence scale. Rjafroc (Pitts- burgh, PA) was used for data analysis; differences in nodule detection performance were considered significant at 0.05. Results: The observer-averaged weighted jackknife alter- native free-response receiver-operating characteristic figures of merit were 0.715 (standard), 0.684 (inverted) and 0.717 (fast-flicking). Random-reader fixed-case anal- ysis revealed no statistically significant difference be- tween any treatment pair [F(2,8) 5 1.22; p 5 0.345]. Conclusion: No statistically significant difference in nodule detection was found for the three display conditions. Advances in knowledge: We have investigated the impact of fast-flicking between standard and inverted display modes for the detection of nodules. We found no benefit