Predicting species abundance distributions by simultaneously using number and biomass as units of measurement

The universal observation that some species in an ecological community are common, but many more are rare, is neatly encapsulated in a species abundance distribution (SAD)1. However, the shape of the distribution can depend on the currency used to measure abundance 2. Here we show how the SADs for numerical abundance and biomass are related and how this relationship can be used to predict the form of the SAD. When plotted in log numerical abundance, log biomass space, species points lie within an approximately triangular area the limits of which are set by body size range, and the upper limit of abundance in both metrics. Under the simplifying, but reasonable, assumption that the observed scatter of species within this region is random, the shape of the SAD is immediately derived from simple geometrical considerations. For the SAD of numerical abundance this is a power curve. The biomass SAD can be either a power curve or, more frequently, a unimodal curve, which can approximate a log normal. This log triangular random placement model serves as a null hypothesis against which actual communities can be compared. Data from two intensively surveyed local communities indicate that it can give a good approximation, with species scattered within a triangle. Further, we can predict the consequences, for the SAD, of size-selective sampling protocols. We argue that mechanistic models of SADs must be able to account for the relative abundance of species in alternative currencies. Moreover, this approach will shed light on niche packing and may have application in environmental monitoring

The important challenge of quantifying tropical diversity

The tropics are the repository of much of the world’s biodiversity, yet are undersampled relative to temperate regions. To help fill this knowledge gap, a paper in BMC Biology explores diversity patterns in tropical African plants, as revealed by the RAINBIO database. The paper documents spatial variation in diversity and data coverage, but also highlights the challenges faced in quantifying diversity patterns using data collated from a range of sources including herbaria. See research article: http://bmcbiol.biomedcentral.com/articles/10.1186/s12915-017-0356-8.Publisher PDFPeer reviewe

The Shape of Species Abundance Distributions Across Spatial Scales

Species abundance distributions (SADs) describe community structure and are a key component of biodiversity theory and research. Although different distributions have been proposed to represent SADs at different scales, a systematic empirical assessment of how SAD shape varies across wide scale gradients is lacking. Here, we examined 11 empirical large-scale datasets for a wide range of taxa and used maximum likelihood methods to compare the fit of the logseries, lognormal, and multimodal (i.e., with multiple modes of abundance) models to SADs across a scale gradient spanning several orders of magnitude. Overall, there was a higher prevalence of multimodality for larger spatial extents, whereas the logseries was exclusively selected as best fit for smaller areas. For many communities the shape of the SAD at the largest spatial extent (either lognormal or multimodal) was conserved across the scale gradient, despite steep declines in area and taxonomic diversity sampled. Additionally, SAD shape was affected by species richness, but we did not detect a systematic effect of the total number of individuals. Our results reveal clear departures from the predictions of two major macroecological theories of biodiversity for SAD shape. Specifically, neither the Neutral Theory of Biodiversity (NTB) nor the Maximum Entropy Theory of Ecology (METE) are able to accommodate the variability in SAD shape we encountered. This is highlighted by the inadequacy of the logseries distribution at larger scales, contrary to predictions of the NTB, and by departures from METE expectation across scales. Importantly, neither theory accounts for multiple modes in SADs. We suggest our results are underpinned by both inter- and intraspecific spatial aggregation patterns, highlighting the importance of spatial distributions as determinants of biodiversity patterns. Critical developments for macroecological biodiversity theories remain in incorporating the effect of spatial scale, ecological heterogeneity and spatial aggregation patterns in determining SAD shape.Peer reviewe

Predation pressure shapes brain anatomy in the wild

The predation pressure data were collected by AEM and AED as part of an ERC-funded project (BioTIME 250189), AEM was supported by the Royal Society, AK and NK were supported by the Knut and Alice Wallenberg Foundation (KAW2013.0072 to NK).There is remarkable diversity in brain anatomy among vertebrates and evidence is accumulating that predatory interactions are crucially important for this diversity. To test this hypothesis, we collected female guppies (Poecilia reticulata) from 16 wild populations and related their brain anatomy to several aspects of predation pressure in this ecosystem, such as the biomass of the four major predators of guppies (one prawn and three fish species), and predator diversity (number of predatory fish species in each site). We found that populations from localities with higher prawn biomass had relatively larger telencephalon size as well as larger brains. Optic tectum size was positively associated with one of the fish predator’s biomass and with overall predator diversity. However, both olfactory bulb and hypothalamus size were negatively associated with the biomass of another of the fish predators. Hence, while fish predator occurrence is associated with variation in brain anatomy, prawn occurrence is associated with variation in brain size. Our results suggest that cognitive challenges posed by local differences in predator communities may lead to changes in prey brain anatomy in the wild.Publisher PDFPeer reviewe

Q&A: What is biodiversity?

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Measuring temporal turnover in ecological communities

Range migrations in response to climate change, invasive species and the emergence of novel ecosystems highlight the importance of temporal turnover in community composition as a fundamental part of global change in the Anthropocene. Temporal turnover is usually quantified using a variety of metrics initially developed to capture spatial change. However, temporal turnover is the consequence of unidirectional community dynamics resulting from processes such as population growth, colonisation and local extinction. Here, we develop a framework based on community dynamics and propose a new temporal turnover measure. A simulation study and an analysis of an estuarine fish community both clearly demonstrate that our proposed turnover measure offers additional insights relative to spatial context-based metrics. Our approach reveals whether community turnover is due to shifts in community composition or in community abundance and identifies the species and/or environmental factors that are responsible for any change

Experimentally testing and assessing the predictive power of species assembly rules for tropical canopy ants.

Understanding how species assemble into communities is a key goal in ecology. However, assembly rules are rarely tested experimentally, and their ability to shape real communities is poorly known. We surveyed a diverse community of epiphyte-dwelling ants and found that similar-sized species co-occurred less often than expected. Laboratory experiments demonstrated that invasion was discouraged by the presence of similarly sized resident species. The size difference for which invasion was less likely was the same as that for which wild species exhibited reduced co-occurrence. Finally we explored whether our experimentally derived assembly rules could simulate realistic communities. Communities simulated using size-based species assembly exhibited diversities closer to wild communities than those simulated using size-independent assembly, with results being sensitive to the combination of rules employed. Hence, species segregation in the wild can be driven by competitive species assembly, and this process is sufficient to generate observed species abundance distributions for tropical epiphyte-dwelling ants.TMF was funded by the UK Natural Environment Research Council, the project “Biodiversity of Forest Ecosystems” CZ.1.07/2.3.00/20.0064 co-financed by the European Social Fund and the state budget of the Czech Republic, an Australian Research Council Discovery Grant (DP140101541), Yayasan Sime Darby, and the Czech Science Foundation (Reg, nos. 14-32302S,14-04258S).This is the final published version. It first appeared at http://onlinelibrary.wiley.com/doi/10.1111/ele.12403/abstract

Temporal turnover and the maintenance of diversity in ecological assemblages

Temporal variation in species abundances occurs in all ecological communities. Here, we explore the role that this temporal turnover plays in maintaining assemblage diversity. We investigate a three-decade time series of estuarine fishes and show that the abundances of the individual species fluctuate asynchronously around their mean levels. We then use a time-series modelling approach to examine the consequences of different patterns of turnover, by asking how the correlation between the abundance of a species in a given year and its abundance in the previous year influences the structure of the overall assemblage. Classical diversity measures that ignore species identities reveal that the observed assemblage structure will persist under all but the most extreme conditions. However, metrics that track species identities indicate a narrower set of turnover scenarios under which the predicted assemblage resembles the natural one. Our study suggests that species diversity metrics are insensitive to change and that measures that track species ranks may provide better early warning that an assemblage is being perturbed. It also highlights the need to incorporate temporal turnover in investigations of assemblage structure and function

Sociability between invasive guppies and native topminnows

This investigation was funded by the European Research Council though a grant (project BioTIME 250189) awarded to AEM and the Concejo Estatal de Ciencia y Tecnología del Estado de Michoacán through a grant awarded to MCC.The role of interspecific social interactions during species invasions may be more decisive than previously thought. Research has revealed that invasive fish improve their foraging success by shoaling with native Mexican species, and potentially increase the chances of invasion success. However, do native individuals tend to associate with invaders as well? We tested the hypothesis that the twoline skiffia (Neotoca bilineata) and the Lerma livebearer (Poeciliopsis infans), both native endemic Mexican topminnows, will associate with guppies, a notorious invasive species present in Mexico. Our investigation shows that guppies, twoline skiffias and Lerma livebearers have a mutual tendency to associate with each other. Although there is a marked tendency to shoal with heterospecifics in this system, shoaling partners do not necessarily benefit equally from the association. Further research on invasive-native social interactions is needed to promote our understanding of potential facilitation by natives.Publisher PDFPeer reviewe