Immune Receptors and Co-receptors in Antiviral Innate Immunity in Plants

Plants respond to pathogens using an innate immune system that is broadly divided into PTI (pathogen-associated molecular pattern- or PAMP-triggered immunity) and ETI (effector-triggered immunity). PTI is activated upon perception of PAMPs, conserved motifs derived from pathogens, by surface membrane-anchored pattern recognition receptors (PRRs). To overcome this first line of defense, pathogens release into plant cells effectors that inhibit PTI and activate effector-triggered susceptibility (ETS). Counteracting this virulence strategy, plant cells synthesize intracellular resistance (R) proteins, which specifically recognize pathogen effectors or avirulence (Avr) factors and activate ETI. These coevolving pathogen virulence strategies and plant resistance mechanisms illustrate evolutionary arms race between pathogen and host, which is integrated into the zigzag model of plant innate immunity. Although antiviral immune concepts have been initially excluded from the zigzag model, recent studies have provided several lines of evidence substantiating the notion that plants deploy the innate immune system to fight viruses in a manner similar to that used for non-viral pathogens. First, most R proteins against viruses so far characterized share structural similarity with antibacterial and antifungal R gene products and elicit typical ETI-based immune responses. Second, virus-derived PAMPs may activate PTI-like responses through immune co-receptors of plant PTI. Finally, and even more compelling, a viral Avr factor that triggers ETI in resistant genotypes has recently been shown to act as a suppressor of PTI, integrating plant viruses into the co-evolutionary model of host-pathogen interactions, the zigzag model. In this review, we summarize these important progresses, focusing on the potential significance of antiviral immune receptors and co-receptors in plant antiviral innate immunity. In light of the innate immune system, we also discuss a newly uncovered layer of antiviral defense that is specific to plant DNA viruses and relies on transmembrane receptor-mediated translational suppression for defense

Isolamento e caracterização de cepas de Saccharomyces cerevisiae de interesse em produção de vinho

Despite the availability of several Saccharomyces cerevisiae commercial strains intended for wine production, strains isolated from winery regions are usually more adapted to their own climatic conditions, grapes and also partially responsible for particular characteristics that frequently identify specific wines and regions. Thus the microbiota of an important winery region (Colombo) was studied in order to isolate and characterize S. cerevisiae strains that could be used on wine production. From 61 yeasts isolated, 14 were identified as S. cerevisiae. Some of them showed fermentative characteristics even better than commercial strains indicating that they could be applied on wine production in order to increase the quality and assure the particular wine characteristics of that region

Rendimento em óleo e composição em ácidos graxos de frutos de Attaela maripa.

Título em inglês: Oil yield and fatty acid compsition of frutis of Attalea maripa

Phenotype Sequencing: Identifying the Genes That Cause a Phenotype Directly from Pooled Sequencing of Independent Mutants

Random mutagenesis and phenotype screening provide a powerful method for dissecting microbial functions, but their results can be laborious to analyze experimentally. Each mutant strain may contain 50–100 random mutations, necessitating extensive functional experiments to determine which one causes the selected phenotype. To solve this problem, we propose a “Phenotype Sequencing” approach in which genes causing the phenotype can be identified directly from sequencing of multiple independent mutants. We developed a new computational analysis method showing that 1. causal genes can be identified with high probability from even a modest number of mutant genomes; 2. costs can be cut many-fold compared with a conventional genome sequencing approach via an optimized strategy of library-pooling (multiple strains per library) and tag-pooling (multiple tagged libraries per sequencing lane). We have performed extensive validation experiments on a set of E. coli mutants with increased isobutanol biofuel tolerance. We generated a range of sequencing experiments varying from 3 to 32 mutant strains, with pooling on 1 to 3 sequencing lanes. Our statistical analysis of these data (4099 mutations from 32 mutant genomes) successfully identified 3 genes (acrB, marC, acrA) that have been independently validated as causing this experimental phenotype. It must be emphasized that our approach reduces mutant sequencing costs enormously. Whereas a conventional genome sequencing experiment would have cost $7,200 in reagents alone, our Phenotype Sequencing design yielded the same information value for only$1200. In fact, our smallest experiments reliably identified acrB and marC at a cost of only $110–$340

Influência da segregação granulométrica e do emprego de aditivos de moagem na adequação de cinzas de casca de arroz como coproduto

RESUMO A cinza de casca de arroz (CCA) é um resíduo proveniente da combustão da casca de arroz utilizada como biomassa na produção de energia. Esta cinza é gerada em grandes quantidades e possui baixa massa específica, o que dificulta o seu gerenciamento, pois demanda muito espaço para o devido armazenamento e descarte. A CCA possui um elevado teor de sílica em sua composição, fator este que pode torná-la um material atrativo para vários segmentos industriais. Neste contexto, este trabalho tem como objetivo avaliar a influência do beneficiamento físico da cinza de casca de arroz, por meio de processos de segregação granulométrica e moagem, com e sem o uso de aditivos, nas características deste material e na sua adequação como coproduto. A metodologia experimental utilizada para o desenvolvimento deste trabalho envolveu a segregação e moagem da CCA (com e sem aditivos de moagem), caracterização química, física e estrutural das amostras de CCA bruta, segregadas e moídas. Os resultados obtidos indicam que a segregação granulométrica se apresenta como fator determinante para a utilização da CCA como coproduto. Com relação à moagem, pode-se verificar que o diâmetro médio das partículas diminui e a massa específica das amostras aumenta, com o aumento do tempo de moagem. Entretanto, verifica-se que os aditivos usados neste trabalho, nas concentrações testadas, não influenciam significativamente na redução do diâmetro das partículas

Répteis em fragmentos de Cerrado e Mata Atlântica no Campo das Vertentes, Estado de Minas Gerais, Sudeste do Brasil

Os dados sobre a fauna reptiliana em Minas Gerais são pontuais e revelam carência de informações sobre esse grupo, principalmente em regiões de transição entre a Mata Atlântica e o Cerrado. A área do estudo está situada no município de Ritápolis (21° 01' 37.07" S e 44° 19' 11.84" O), microrregião Campo das Vertentes, Estado de Minas Gerais, Sudeste do Brasil. Pretendeu-se com a presente pesquisa conhecer a composição da fauna de répteis local. As observações, capturas e coletas foram realizadas quinzenalmente, durante dois dias consecutivos, de agosto de 2005 a julho de 2006. As capturas foram realizadas por meio de armadilhas de interceptação e queda, distribuídas em oito sítios, sendo quatro em área de mata de galeria e quatro em área aberta, perfazendo um esforço amostral de 6.912 horas-balde. Foi também realizada procura ativa e encontros ocasionais com registros fotográficos dos espécimes, e, no caso de serpentes, alguns exemplares foram entregues por terceiros quando encontradas mortos. Registrou-se a presença de 31 espécies de répteis, sendo duas espécies de cágados, nove de lagartos, duas de anfisbenas e 18 de serpentes. Apenas os lagartos Cercosaura ocellata, Enyalius bilineatus e Tupinambis merianae e as serpentes Leptodeira annulata e Apostolepis assimilis foram capturados nas armadilhas de queda. Os lagartos mais comuns foram Ameiva ameiva e Mabuya frenata, e as serpentes mais abundantes foram Oxyrhophus guibei e Sibynomorphus mikanii. Os lagartos estão bem representados na área, com espécies típicas de mata, como Enyalius bilineatus, e de áreas aberta de cerrado, como Ameiva ameiva e Mabuya frenata. A fauna de serpentes possui representantes típicos de áreas abertas do Cerrado, como O. guibei e Micrurus frontalis, e de regiões florestadas, como Liophis poecilogyrus e Philodryas olfersii. A diversidade de espécies de répteis e o registro prévio de Amphisbaena dubia e Hydromedusa tectifera para o Estado de Minas Gerais indicam a grande potencialidade do Campo das Vertentes em revelar a ocorrência de espécies novas ou a ampliação na distribuição de outras

Translational control in plant antiviral immunity

Due to the limited coding capacity of viral genomes, plant viruses depend extensively on the host cell machinery to support the viral life cycle and, thereby, interact with a large number of host proteins during infection. Within this context, as plant viruses do not harbor translation-required components, they have developed several strategies to subvert the host protein synthesis machinery to produce rapidly and efficiently the viral proteins. As a countermeasure against infection, plants have evolved defense mechanisms that impair viral infections. Among them, the host-mediated translational suppression has been characterized as an efficient mean to restrict infection. To specifically suppress translation of viral mRNAs, plants can deploy susceptible recessive resistance genes, which encode translation initiation factors from the eIF4E and eIF4G family and are required for viral mRNA translation and multiplication. Additionally, recent evidence has demonstrated that, alternatively to the cleavage of viral RNA targets, host cells can suppress viral protein translation to silence viral RNA. Finally, a novel strategy of plant antiviral defense based on suppression of host global translation, which is mediated by the transmembrane immune receptor NIK1 (nuclear shuttle protein (NSP)-Interacting Kinase1), is discussed in this review

Translational control in plant antiviral immunity

Abstract Due to the limited coding capacity of viral genomes, plant viruses depend extensively on the host cell machinery to support the viral life cycle and, thereby, interact with a large number of host proteins during infection. Within this context, as plant viruses do not harbor translation-required components, they have developed several strategies to subvert the host protein synthesis machinery to produce rapidly and efficiently the viral proteins. As a countermeasure against infection, plants have evolved defense mechanisms that impair viral infections. Among them, the host-mediated translational suppression has been characterized as an efficient mean to restrict infection. To specifically suppress translation of viral mRNAs, plants can deploy susceptible recessive resistance genes, which encode translation initiation factors from the eIF4E and eIF4G family and are required for viral mRNA translation and multiplication. Additionally, recent evidence has demonstrated that, alternatively to the cleavage of viral RNA targets, host cells can suppress viral protein translation to silence viral RNA. Finally, a novel strategy of plant antiviral defense based on suppression of host global translation, which is mediated by the transmembrane immune receptor NIK1 (nuclear shuttle protein (NSP)-Interacting Kinase1), is discussed in this review

Assessment of the Fetal Heart at 12-14 Weeks of Pregnancy Using B-Mode, Color Doppler, and Spatiotemporal Image Correlation via Abdominal and Vaginal Ultrasonography

This study aimed to evaluate the effect that combining multiple ultrasonographic imaging methods has on the proportion of tests with a satisfactory fetal heart assessment at 12-14 weeks of pregnancy using B-mode, color Doppler, and spatiotemporal image correlation software (STIC) via both the abdominal and vaginal routes. This cross-sectional prospective study involved healthy pregnant women at 12-14 weeks of pregnancy with a crown-rump length (CRL) of 84 mm or shorter. the following four cardiac views were assessed: four-chamber, left and right ventricular outflow tract, and aortic arch views. the same examiner sought to identify these four views using B-mode, color Doppler, and STIC via both the vaginal and abdominal routes. the study determined the proportion of cases and the respective 95 % confidence intervals (CIs) in which all four views were identified. the presence of significant differences in comparisons between methods was analyzed using McNemar's test. Although 57 pregnant women at 12-14 weeks of pregnancy agreed to participate in the study, 4 were not included because they presented with a CRL longer than 84 mm. Thus, 53 pregnant women were thoroughly assessed and included in the analysis. the combination of B-mode, color Doppler, and STIC via both the abdominal and vaginal routes enabled the highest proportion of identification of the four views (90.6 %; 95 % CI, 79.8-95.9 %). the lowest proportions were observed when B-mode was used alone via both the vaginal route (30.2 %; 95 % CI, 19.5-43.5 %) and the abdominal route (37.7 %; 95 % CI, 25.9-51.2 %). the abdominal route showed results slightly better than those of the vaginal route with all the methods, but the differences were not statistically significant. in the vast majority of the cases, the fetal hearts were properly assessed at 12-14 weeks of pregnancy when several methods were combined using both the abdominal and vaginal routes. However, only one-third of them would have had adequate heart assessment if the B-mode via either the abdominal or the vaginal route had been used alone.Fed Univ São Paulo UNIFESP, Dept Obstet, Fetal Cardiol Unit, BR-05303300 São Paulo, BrazilUniv São Paulo DGO FMRP USP, Ribeirao Preto Med Sch, Dept Obstet & Gynecol, Ribeirao Preto, BrazilUltrasonog & Retraining Med Sch Ribeirao Preto EU, Ribeirao Preto, BrazilFed Univ São Paulo UNIFESP, Dept Obstet, Fetal Cardiol Unit, BR-05303300 São Paulo, BrazilWeb of Scienc