146 research outputs found
Thermodynamic properties of higher-dimensional dS black holes in dRGT massive gravity
On the basis of the state parameter of de Sitter space-time satisfying the
first law of thermodynamics,we can derive some effective thermodynamic
quantities.When the temperature of the black hole horizon is equal to that of
the cosmological horizon, we think that the effective temperature of the
space-time should have the same value. Using this condition, we obtain a
differential equation of the entropy of the de Sitter black hole in the
higherdimensional de Rham, Gabadadze and Tolley (dRGT) massive gravity. Solving
the differential equation, we obtain the corrected entropy and effective
thermodynamic quantities of the de Sitter black hole. The results show that for
multiparameter black holes, the entropy satisfied differential equation is
invariable with different independent state parameters. Therefore, the entropy
of higher-dimensional dS black holes in dRGT massive gravity is only a function
of the position of the black hole horizon, and is independent of other state
parameters. It is consistent with the corresponding entropy of the black hole
horizon and the cosmological horizon. The thermodynamic quantities of
self-consistent de Sitter spacetime are given theoretically, and the equivalent
thermodynamic quantities have the second-order phase transformation similar to
AdS black hole, but unlike AdS black hole, the equivalent temperature of de
Sitter space-time has a maximum value. By satisfying the requirement of
thermodynamic equilibrium and stability of space-time, the conditions for the
existence of dS black holes in the universe are obtained.Comment: 11 pages, 6 figure
Phase transition and entropic force of de Sitter black hole in massive gravity
It is well known that de Sitter(dS) black holes generally have a black hole
horizon and a cosmological horizon, both of which have Hawking radiation. But
the radiation temperature of the two horizons is generally different, so dS
black holes do not meet the requirements of thermal equilibrium stability,
which brings certain difficulties to the study of the thermodynamic
characteristics of black holes. In this paper, dS black hole is regarded as a
thermodynamic system, and the effective thermodynamic quantities of the system
are obtained. The influence of various state parameters on the effective
thermodynamic quantities in the massive gravity space-time is discussed. The
condition of the phase transition of the de Sitter black hole in massive
gravity space-time is given. We consider that the total entropy of the dS black
hole is the sum of the corresponding entropy of the two horizons plus an extra
term from the correlation of the two horizons. By comparing the entropic force
of interaction between black hole horizon and the cosmological horizon with
Lennard-Jones force between two particles, we find that the change rule of
entropic force between the two system is surprisingly the same. The research
will help us to explore the real reason of accelerating expansion of the
universe.Comment: 14 pages,11 figure
GEE-Based Ecological Environment Variation Analysis under Human Projects in Typical China Loess Plateau Region
The China Loess Plateau (CLP) is a unique geomorphological unit with abundant coal resources but a fragile ecological environment. Since the implementation of the Western Development plan in 2000, the Grain for Green Project (GGP), coal mining, and urbanization have been extensively promoted by the government in the CLP. However, research on the influence of these human projects on the ecological environment (EE) is still lacking. In this study, we investigated the spatial–temporal variation of EE in a typical CLP region using a Remote Sensing Ecological Index (RSEI) based on the Google Earth Engine (GEE). We obtained a long RSEI time series from 2002–2022, and used trend analysis and rescaled range analysis to predict changing trends in EE. Finally, we used Geodetector to verify the influence of three human projects (GGP, coal mining, and urbanization). Our results show that GGP was the major driving factor of ecological changes in the typical CLP region, while coal mining and urbanization had significant local effects on EE. Our research provides valuable support for ecological protection and sustainable social development in the relatively underdeveloped region of northwest China
Engineering a highly active thermophilic β-glucosidase to enhance its pH stability and saccharification performance
A Computational Study of Three Frequent Mutations of EGFR and their Effects on Protein Dimer Formation and Non-Small Cell Lung Cancer Drug Resistance
The anaphase promoting complex impacts repair choice by protecting ubiquitin signalling at DNA damage sites
Double-strand breaks (DSBs) are repaired through two major pathways, homology-directed recombination (HDR) and non-homologous end joining (NHEJ). While HDR can only occur in S/G2, NHEJ can happen in all cell cycle phases (except mitosis). How then is the repair choice made in S/G2 cells? Here we provide evidence demonstrating that APCCdh1 plays a critical role in choosing the repair pathways in S/G2 cells. Our results suggest that the default for all DSBs is to recruit 53BP1 and RIF1. BRCA1 is blocked from being recruited to broken ends because its recruitment signal, K63-linked poly-ubiquitin chains on histones, is actively destroyed by the deubiquitinating enzyme USP1. We show that the removal of USP1 depends on APCCdh1 and requires Chk1 activation known to be catalysed by ssDNA-RPA-ATR signalling at the ends designated for HDR, linking the status of end processing to RIF1 or BRCA1 recruitment.We thank S.-Y. Lin (MD Anderson Cancer Center) for cell lines; J. Rosen (Baylor College of Medicine) for reagents; H. Masai (Tokyo Metropolitan Institute of Medical Science) for U2OS-Fucci cell line; D. Durocher (University of Toronto) for HeLa-Fucci cell line; E. Citterio (Netherlands Cancer Institute) for GFP-USP3 construct; M.S.Y. Huen (The University of Hong Kong) for RNF168 antibody. This work was performed with facilities and instruments in the Imaging Core of National Center for Protein Science (Beijing), the Cytometry and Cell Sorting Core at Baylor College of Medicine with funding from the NIH (P30 AI036211, P30 CA125123 and S10 RR024574), the Integrated Microscopy Core at Baylor College of Medicine with funding from the NIH (HD007495, DK56338 and CA125123), and the John S. Dunn Gulf Coast Consortium for Chemical Genomics. We also thank other members of the Zhang lab for helpful discussion and support.
This work was supported in part by an international collaboration grant (# 2013DFB30210) and a 973 Project grant (# 2013CB910300) from Chinese Minister of Science and Technology, in part by a Chinese National Natural Science Foundation grant (# 81171920), in part by a grant from The Committee of Science and Technology of Beijing Municipality, China (# Z141100000214015), and in part by NIH grants CA116097 and CA122623 to P.Z. J.J. is supported by grants from National Institutes of Health (R01GM102529) and the Welch Foundation (AU-1711). S.H. is supported by grants (# 81272488 and 81472795) from Chinese National Natural Science Foundation. Y.Z. is supported by grants from the National Natural Scientific Foundation of China (No. 81430055), Programs for Changjiang Scholars and Innovative Research Team in University (No. IRT_15R13).S
Network Modeling Identifies Molecular Functions Targeted by miR-204 to Suppress Head and Neck Tumor Metastasis
Due to the large number of putative microRNA gene targets predicted by sequence-alignment databases and the relative low accuracy of such predictions which are conducted independently of biological context by design, systematic experimental identification and validation of every functional microRNA target is currently challenging. Consequently, biological studies have yet to identify, on a genome scale, key regulatory networks perturbed by altered microRNA functions in the context of cancer. In this report, we demonstrate for the first time how phenotypic knowledge of inheritable cancer traits and of risk factor loci can be utilized jointly with gene expression analysis to efficiently prioritize deregulated microRNAs for biological characterization. Using this approach we characterize miR-204 as a tumor suppressor microRNA and uncover previously unknown connections between microRNA regulation, network topology, and expression dynamics. Specifically, we validate 18 gene targets of miR-204 that show elevated mRNA expression and are enriched in biological processes associated with tumor progression in squamous cell carcinoma of the head and neck (HNSCC). We further demonstrate the enrichment of bottleneckness, a key molecular network topology, among miR-204 gene targets. Restoration of miR-204 function in HNSCC cell lines inhibits the expression of its functionally related gene targets, leads to the reduced adhesion, migration and invasion in vitro and attenuates experimental lung metastasis in vivo. As importantly, our investigation also provides experimental evidence linking the function of microRNAs that are located in the cancer-associated genomic regions (CAGRs) to the observed predisposition to human cancers. Specifically, we show miR-204 may serve as a tumor suppressor gene at the 9q21.1–22.3 CAGR locus, a well established risk factor locus in head and neck cancers for which tumor suppressor genes have not been identified. This new strategy that integrates expression profiling, genetics and novel computational biology approaches provides for improved efficiency in characterization and modeling of microRNA functions in cancer as compared to the state of art and is applicable to the investigation of microRNA functions in other biological processes and diseases
Tumor Biology and Immune Infiltration Define Primary Liver Cancer Subsets Linked to Overall Survival After Immunotherapy
Primary liver cancer is a rising cause of cancer deaths in the US. Although immunotherapy with immune checkpoint inhibitors induces a potent response in a subset of patients, response rates vary among individuals. Predicting which patients will respond to immune checkpoint inhibitors is of great interest in the field. In a retrospective arm of the National Cancer Institute Cancers of the Liver: Accelerating Research of Immunotherapy by a Transdisciplinary Network (NCI-CLARITY) study, we use archived formalin-fixed, paraffin-embedded samples to profile the transcriptome and genomic alterations among 86 hepatocellular carcinoma and cholangiocarcinoma patients prior to and following immune checkpoint inhibitor treatment. Using supervised and unsupervised approaches, we identify stable molecular subtypes linked to overall survival and distinguished by two axes of aggressive tumor biology and microenvironmental features. Moreover, molecular responses to immune checkpoint inhibitor treatment differ between subtypes. Thus, patients with heterogeneous liver cancer may be stratified by molecular status indicative of treatment response to immune checkpoint inhibitors
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