1,343 research outputs found
Assessing uptake of the Harmonising Outcome Measures for Eczema (HOME) Core Outcome Set and Recommended Instruments
Understanding Bipolar Disorder Within a Biopsychosocial Emotion Dysregulation Framework
This is the author accepted manuscript. The final version is available on open access from Elsevier via the DOI in this recordBipolar disorder is characterized by extreme mood fluctuations and ongoing affective instability. Mechanisms involved in emotion regulation (ER) seem to be a contributing factor, however the nature and extent of these are not clear yet. The aim of the current review is to contribute to a comprehensive model that covers the full scope of the emotion regulation processes in BD, in order to understand the psychological mechanisms that could contribute to the onset of both manic and depressive states. To this end we review each stage (attentional, behavioural and cognitive processes) of the Process Model of Emotion Regulation in relation to the extant literature on mood or emotion-linked responses in BD. Additionally, potential vulnerability factors (e.g. biological, genetic, personality) for dysfunctional emotion regulation patterns are described. We conclude that on all levels of the emotion regulation model there are seemingly contradictory findings in BD, with evidence for a profile that is characterized by the tendency to upregulate positive affect, as well as a profile that tends to over-use downregulation strategies for both positive and negative affect. These profiles could be characterized by different emotion regulation mechanisms, personality profiles and biological and psychological vulnerability factors. Based on these findings we tentatively identify two emotion regulation profiles in BD (reflecting ‘approach’ and ‘avoidant’ behaviours respectively) and discuss clinical implications and different treatment approaches. To illustrate the latter, we present two clinical cases of both ER profiles and their different treatment approaches
Evaluating the landscape of fear between apex predatory sharks and mobile sea turtles across a large dynamic seascape
The ‘‘landscape of fear’’ model has been proposed as a unifying concept in ecology, describing, in part, how animals behave and move about in their environment. The basic model predicts that as an animal’s landscape changes from low to high risk of predation,
prey species will alter their behavior to risk avoidance. However, studies investigating and evaluating the landscape of fear model across large spatial scales (tens to hundreds of thousands of square kilometers) in dynamic, open, aquatic systems involving apex predators and highly mobile prey are lacking. To address this knowledge gap, we investigated predator–prey relationships between tiger sharks (Galeocerdo cuvier) and loggerhead turtles (Caretta caretta) in the North Atlantic Ocean. This included the use of satellite tracking to examine shark and turtle distributions as well as their surfacing behaviors under varying levels of home range overlap. Our findings revealed patterns that deviated from our a priori predictions based on the landscape of fear model. Specifically, turtles did not alter their surfacing behaviors to risk avoidance when overlap in shark–turtle core home range was high. However, in areas of high overlap with turtles, sharks exhibited modified surfacing behaviors that may enhance predation opportunity. We suggest that turtles may be an important factor in determining shark distribution, whereas for turtles, other life history trade-offs may play a larger role in
defining their habitat use. We propose that these findings are a result of both biotic and physically driven factors that independently or synergistically affect predator–prey interactions in this system. These results have implications for evolutionary biology, community ecology, and wildlife conservation. Further, given the difficulty in studying highly migratory marine species, our approach and conclusions may be applied to the study of other predator–prey systems.Bald Head Island ConservancyBritish Chelonia GroupNatural Environmental Research CouncilWAVE Foundation/Newport Aquarium CincinnatiPADI project AWARESEATURTLE.ORGWhitener Foundation (NC); an Endangered Species Act Section 6 Cooperative Agreement with
NOAA Fisheries and the Grays Reef National Marine Sanctuary (South Carolina and Georgia)Batchelor FoundationDinsey Conservation Fun
The von Hippel-Lindau Chuvash mutation in mice alters cardiac substrate and high energy phosphate metabolism
Hypoxia-inducible factor (HIF) appears to function as a global master regulator of cellular and systemic responses to hypoxia. HIF-pathway manipulation is of therapeutic interest, however global, systemic upregulation of HIF may have as yet unknown effects on multiple processes. We utilized a mouse model of Chuvash polycythemia (CP), a rare genetic disorder which modestly increases expression of HIF target genes in normoxia, to understand what these effects might be within the heart.
An integrated in and ex vivo approach was employed. In comparison to wild-type controls, CP mice had evidence (using in vivo MRI) of pulmonary hypertension, right ventricular hypertrophy, and increased left ventricular ejection fraction. Glycolytic flux (measured using 3H glucose) in the isolated, contracting, perfused CP heart was 1.8-fold higher. Net lactate efflux was 1.5-fold higher. Furthermore, in vivo 13C magnetic resonance spectroscopy (MRS) of hyperpolarized 13C1 pyruvate revealed a 2-fold increase in real-time flux through lactate dehydrogenase in the CP hearts, and a 1.6-fold increase through pyruvate dehydrogenase. 31P MRS of perfused CP hearts under increased workload (isoproterenol infusion) demonstrated increased depletion of phosphocreatine relative to ATP. Intriguingly, no changes in cardiac gene expression were detected.
In summary, a modest systemic dysregulation of the HIF pathway resulted in clear alterations in cardiac metabolism and energetics. However, in contrast to studies generating high HIF levels within the heart, the CP mice showed neither the predicted changes in gene expression nor any degree of LV impairment. We conclude that the effects of manipulating HIF on the heart are dose-dependent.
New and noteworthy
This is the first integrative metabolic and functional study of the effects of modest HIF manipulation within the heart. Of particular note, the combination (and correlation) of perfused heart metabolic flux measurements with the new technique of real-time in vivo MR spectroscopy using hyperpolarized pyruvate is a novel development
Grassmannian flows and applications to nonlinear partial differential equations
We show how solutions to a large class of partial differential equations with
nonlocal Riccati-type nonlinearities can be generated from the corresponding
linearized equations, from arbitrary initial data. It is well known that
evolutionary matrix Riccati equations can be generated by projecting linear
evolutionary flows on a Stiefel manifold onto a coordinate chart of the
underlying Grassmann manifold. Our method relies on extending this idea to the
infinite dimensional case. The key is an integral equation analogous to the
Marchenko equation in integrable systems, that represents the coodinate chart
map. We show explicitly how to generate such solutions to scalar partial
differential equations of arbitrary order with nonlocal quadratic
nonlinearities using our approach. We provide numerical simulations that
demonstrate the generation of solutions to
Fisher--Kolmogorov--Petrovskii--Piskunov equations with nonlocal
nonlinearities. We also indicate how the method might extend to more general
classes of nonlinear partial differential systems.Comment: 26 pages, 2 figure
The lncRNA HOTAIR transcription is controlled by HNF4α-induced chromatin topology modulation
The expression of the long noncoding RNA HOTAIR (HOX Transcript Antisense Intergenic RNA) is largely deregulated in epithelial cancers and positively correlates with poor prognosis and progression of hepatocellular carcinoma and gastrointestinal cancers. Furthermore, functional studies revealed a pivotal role for HOTAIR in the epithelial-to-mesenchymal transition, as this RNA is causal for the repressive activity of the master factor SNAIL on epithelial genes. Despite the proven oncogenic role of HOTAIR, its transcriptional regulation is still poorly understood. Here hepatocyte nuclear factor 4-α (HNF4α), as inducer of epithelial differentiation, was demonstrated to directly repress HOTAIR transcription in the mesenchymal-to epithelial transition. Mechanistically, HNF4α was found to cause the release of a chromatin loop on HOTAIR regulatory elements thus exerting an enhancer-blocking activity
Spontaneous vortices in the formation of Bose-Einstein condensates
Phase transitions are ubiquitous in nature, ranging from protein folding and
denaturisation, to the superconductor-insulator quantum phase transition, to
the decoupling of forces in the early universe. Remarkably, phase transitions
can be arranged into universality classes, where systems having unrelated
microscopic physics exhibit identical scaling behaviour near the critical
point. Here we present an experimental and theoretical study of the
Bose-Einstein condensation phase transition of an atomic gas, focusing on one
prominent universal element of phase transition dynamics: the spontaneous
formation of topological defects during a quench through the transition. While
the microscopic dynamics of defect formation in phase transitions are generally
difficult to investigate, particularly for superfluid phase transitions,
Bose-Einstein condensates (BECs) offer unique experimental and theoretical
opportunities for probing such details. Although spontaneously formed vortices
in the condensation transition have been previously predicted to occur, our
results encompass the first experimental observations and statistical
characterisation of spontaneous vortex formation in the condensation
transition. Using microscopic theories that incorporate atomic interactions and
quantum and thermal fluctuations of a finite-temperature Bose gas, we simulate
condensation and observe vortex formation in close quantitative agreement with
our experimental results. Our studies provide further understanding of the
development of coherence in superfluids, and may allow for direct investigation
of universal phase-transition dynamics.Comment: 14 pages, 6 figures. Accepted for publication in Nature.
Supplementary movie files are available at
http://www.physics.uq.edu.au/people/mdavis/spontaneous_vortice
Nonlinear vortex light beams supported and stabilized by dissipation
We describe nonlinear Bessel vortex beams as localized and stationary
solutions with embedded vorticity to the nonlinear Schr\"odinger equation with
a dissipative term that accounts for the multi-photon absorption processes
taking place at high enough powers in common optical media. In these beams,
power and orbital angular momentum are permanently transferred to matter in the
inner, nonlinear rings, at the same time that they are refueled by spiral
inward currents of energy and angular momentum coming from the outer linear
rings, acting as an intrinsic reservoir. Unlike vortex solitons and dissipative
vortex solitons, the existence of these vortex beams does not critically depend
on the precise form of the dispersive nonlinearities, as Kerr self-focusing or
self-defocusing, and do not require a balancing gain. They have been shown to
play a prominent role in "tubular" filamentation experiments with powerful,
vortex-carrying Bessel beams, where they act as attractors in the beam
propagation dynamics. Nonlinear Bessel vortex beams provide indeed a new
solution to the problem of the stable propagation of ring-shaped vortex light
beams in homogeneous self-focusing Kerr media. A stability analysis
demonstrates that there exist nonlinear Bessel vortex beams with single or
multiple vorticity that are stable against azimuthal breakup and collapse, and
that the mechanism that renders these vortexes stable is dissipation. The
stability properties of nonlinear Bessel vortex beams explain the experimental
observations in the tubular filamentation experiments.Comment: Chapter of boo
Robustness of circadian clocks to daylight fluctuations: hints from the picoeucaryote Ostreococcus tauri
The development of systemic approaches in biology has put emphasis on
identifying genetic modules whose behavior can be modeled accurately so as to
gain insight into their structure and function. However most gene circuits in a
cell are under control of external signals and thus quantitative agreement
between experimental data and a mathematical model is difficult. Circadian
biology has been one notable exception: quantitative models of the internal
clock that orchestrates biological processes over the 24-hour diurnal cycle
have been constructed for a few organisms, from cyanobacteria to plants and
mammals. In most cases, a complex architecture with interlocked feedback loops
has been evidenced. Here we present first modeling results for the circadian
clock of the green unicellular alga Ostreococcus tauri. Two plant-like clock
genes have been shown to play a central role in Ostreococcus clock. We find
that their expression time profiles can be accurately reproduced by a minimal
model of a two-gene transcriptional feedback loop. Remarkably, best adjustment
of data recorded under light/dark alternation is obtained when assuming that
the oscillator is not coupled to the diurnal cycle. This suggests that coupling
to light is confined to specific time intervals and has no dynamical effect
when the oscillator is entrained by the diurnal cycle. This intringuing
property may reflect a strategy to minimize the impact of fluctuations in
daylight intensity on the core circadian oscillator, a type of perturbation
that has been rarely considered when assessing the robustness of circadian
clocks
Evolutionary relationships among barley and <i>Arabidopsis</i> core circadian clock and clock-associated genes
The circadian clock regulates a multitude of plant developmental and metabolic processes. In crop species, it contributes significantly to plant performance and productivity and to the adaptation and geographical range over which crops can be grown. To understand the clock in barley and how it relates to the components in the Arabidopsis thaliana clock, we have performed a systematic analysis of core circadian clock and clock-associated genes in barley, Arabidopsis and another eight species including tomato, potato, a range of monocotyledonous species and the moss, Physcomitrella patens. We have identified orthologues and paralogues of Arabidopsis genes which are conserved in all species, monocot/dicot differences, species-specific differences and variation in gene copy number (e.g. gene duplications among the various species). We propose that the common ancestor of barley and Arabidopsis had two-thirds of the key clock components identified in Arabidopsis prior to the separation of the monocot/dicot groups. After this separation, multiple independent gene duplication events took place in both monocot and dicot ancestors. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s00239-015-9665-0) contains supplementary material, which is available to authorized users
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