Multi-omics for studying and understanding polar life

Polar ecosystems are experiencing amongst the most rapid rates of regional warming on Earth. Here, we discuss ‘omics’ approaches to investigate polar biodiversity, including the current state of the art, future perspectives and recommendations. We propose a community road map to generate and more fully exploit multi-omics data from polar organisms. These data are needed for the comprehensive evaluation of polar biodiversity and to reveal how life evolved and adapted to permanently cold environments with extreme seasonality. We argue that concerted action is required to mitigate the impact of warming on polar ecosystems via conservation efforts, to sustainably manage these unique habitats and their ecosystem services, and for the sustainable bioprospecting of novel genes and compounds for societal gain

The interplay of spatial and climatic landscapes in the genetic distribution of a South American parrot

AimOur aim was to understand the interplay of heterogeneous climatic and spatial landscapes in shaping the distribution of nuclear microsatellite variation in burrowing parrots, Cyanoliseus patagonus. Given the marked phenotypic differences between populations of burrowing parrots we hypothesized an important role of geographical as well climatic heterogeneity in the population structure of this species. LocationSouthern South America. MethodsWe applied a landscape genetics approach to investigate the explicit patterns of genetic spatial autocorrelation based on both geography and climate using spatial principal component analysis (sPCA). This necessitated a novel statistical estimation of the species climatic landscape, considering temperature- and precipitation-based variables separately to evaluate their weight in shaping the distribution of genetic variation in our model system. ResultsGeographical and climatic heterogeneity successfully explained molecular variance in burrowing parrots. sPCA divided the species distribution into two main areas, Patagonia and the pre-Andes, which were connected by an area of geographical and climatic transition. Moreover, sPCA revealed cryptic and conservation-relevant genetic structure: the pre-Andean populations and the transition localities were each divided into two groups, each management units for conservation. Main conclusionssPCA, a method originally developed for spatial genetics, allowed us to unravel the genetic structure related to spatial and climatic landscapes and to visualize these patterns in landscape space. These novel climatic inferences underscore the importance of our modified sPCA approach in revealing how climatic variables can drive cryptic patterns of genetic structure, making the approach potentially useful in the study of any species distributed over a climatically heterogeneous landscape

Stable isotope analysis reveals sexual and environmental variability and individual consistency in foraging of thin-billed prions

Based on growing knowledge on the distribution of stable isotopes in marine food webs, a powerful tool to study movements and trophic position of seabirds has been developed. Here we provide an updated review of isotope studies in the Southern Ocean and use δ<sup>13</sup>C and δ<sup>15</sup>N to evaluate diet and foraging areas of a small pelagic seabird, the thin-billed prion Pachyptila belcheri, breeding on the Falkland Islands. We found that close to egg laying, adults foraged in Falkland waters or northerly, but used more southerly foraging areas during courtship and chick rearing. Feathers grown during winter indicated that most individuals migrated south, although a small number of adults migrated north every year, consistent with regular winter observations of this species off Patagonia and southern Brazil. Thus, Antarctic waters are used regularly, but not exclusively, during the breeding and inter-breeding season. We document sex-specific segregation in foraging for the first time in this species. Males and females differed in δ<sup>13</sup>C and δ<sup>15</sup>N during courtship and chick feeding. On average, males foraged at a higher trophic level and further north than females. The isotopic signatures of blood sampled from individual chicks at different ages were correlated, indicating consistent behaviour of adult pairs over the chick-rearing period. Analysis of differences among years revealed more depleted isotope values during warmer years, suggesting more southerly foraging and a lower trophic level diet. This agrees with previous studies suggesting that warm sea surface waters depress local food availability, forcing prions to undertake longer foraging trips further south

Stable isotopes reveal variable foraging behaviour in a colony of the imperial shag phalacrocorax atriceps: differences between ages sexes and years

Stable isotope analysis (SIA) is used in the study of trophic relationships in food webs, being also a powerful tool for the study of intraspecific diet segregation. Unlike short-term data from most conventional diet studies, SIA can also provide information about times when seabirds stay out at sea and are thus not easily accessible. Imperial Shags Phalacrocorax atriceps are resident seabirds showing sexual dimorphism in body size. Previous studies showed strong intra-species dietary segregation between male and female Imperial Shags during the breeding season. Between 2006 and 2009 at New Island in the Falkland Islands/Islas Malvinas (southwest Atlantic), we investigated if intraspecific differences were also present between age-groups, namely adults and immature males. We further tested if differences existed over the year, particularly during the non-breeding season. Finally, we tested if differences were consistent among studied years. We found no differences in δ13C values between immature and adult males. However, lower δ15N values indicated feeding at lower trophic levels for immatures. This might be explained by poorer hunting abilities of young, inexperienced birds, compared to adults. In both the breeding and non-breeding seasons, differences among years in both δ13C and δ15N suggest that the foraging behaviour of the shags differed among years in terms of spatial distribution and trophic level. Males consistently foraged on a higher trophic level than females and had lower δ13C values, which is in line with the use of foraging areas further offshore

Introduced mammals coexist with seabirds at New Island, Falkland Islands: abundance, habitat preferences, and stable isotope analysis of diet

The largest known colony of Thin-billed prions Pachyptila belcheri has been coexisting with introduced mammals for more than 100 years. Three of the introduced mammals are potential predators of adults, eggs and chicks, namely ship rats Rattus rattus, house mice Mus musculus and feral cats Felis catus. We here determine habitat preferences over three seasons and dietary patterns of the unique set of introduced predators at New Island, Falkland Islands, with emphasis on the ship rats. Our study highlights spatial and temporal differences in the levels of interaction between predators and native seabirds. Rats and mice had a preference for areas providing cover in the form of the native tussac grass Parodiochloa flabellata or introduced gorse Ulex europaeus. Their diet differed markedly between areas, over the season and between age groups in rats. During the incubation period of the prions in November-December, ship rats had mixed diets, composed mainly of plants and mammals, while only 3% of rats had ingested birds. The proportion of ingested birds, including scavenged, increased in the prion chick-rearing period, when 60% of the rats consumed prions. We used delta C-13 and delta N-15 to compare the importance of marine-derived food between mammal species and individuals, and found that rats in all but one area took diet of partly marine origin, prions being the most frequently encountered marine food. Most house mice at New Island mainly had terrestrial diet. The stable isotope analysis of tissues with different turnover times indicated that individual rats and mice were consistent in their diet over weeks, but opportunistic in the short term. Some individuals (12% of rats and 7% of mice) were highly specialized in marine-derived food. According to the isotope ratios in a small sample of cat faeces, rodents and rabbits were the chief prey of cats at New Island. Although some individuals of all three predators supplement their terrestrial diet with marine-derived food, the current impact of predation by mammals on the large population of Thin-billed prions at New Island appears small due to a number of factors, including the small size of rodent populations and restriction mainly to small areas providing cove

Overlap between marine predators and proposed Marine Managed Areas on the Patagonian Shelf.

Static (fixed-boundary) protected areas are key ocean conservation strategies, and marine higher predator distribution data can play a leading role toward identifying areas for conservation action. The Falkland Islands are a globally significant site for colonial breeding marine higher predators (i.e., seabirds and pinnipeds). However, overlap between marine predators and Falkland Islands proposed Marine Managed Areas (MMAs) has not been quantified. Hence, to provide information required to make informed decisions regarding the implementation of proposed MMAs, our aims were to objectively assess how the proposed MMA network overlaps with contemporary estimates of marine predator distribution. We collated tracking data (1999–2019) and used a combination of kernel density estimation and model-based predictions of spatial usage to quantify overlap between colonial breeding marine predators and proposed Falkland Islands MMAs. We also identified potential IUCN Key Biodiversity Areas (pKBAs) using (1) kernel density based methods originally designed to identify Important Bird and Biodiversity Areas (IBAs) and (2) habitat preference models. The proposed inshore MMA, which extends three nautical miles from the Falkland Islands, overlapped extensively with areas used by colonial breeding marine predators. This reflects breeding colonies being distributed throughout the Falklands archipelago, and use being high adjacent to colonies due to central-place foraging constraints. Up to 45% of pKBAs identified via kernel density estimation were located within the proposed MMAs. In particular, the proposed Jason Islands Group MMA overlapped with pKBAs for three marine predator species, suggesting it is a KBA hot spot. However, tracking data coverage was incomplete, which biased pKBAs identified using kernel density methods, to colonies tracked. Moreover, delineation of pKBA boundaries were sensitive to the choice of smoothing parameter used in kernel density estimation. Delineation based on habitat model predictions for both sampled and unsampled colonies provided less biased estimates, and revealed 72% of the Falkland Islands Conservation Zone was likely a KBA. However, it may not be practical to consider such a large area for fixed-boundary management. In the context of wide-ranging marine predators, emerging approaches such as dynamic ocean management could complement static management frameworks such as MMAs, and provide protection at relevant spatiotemporal scales

Current threats faced by Neotropical parrot populations

Berkunsky I, Quillfeldt P, Brightsmith DJ, et al. Current threats faced by Neotropical parrot populations. Biological Conservation. 2017;214:278-287.Psittaciformes (parrots, cockatoos) are among the most endangered birds, with 31% of Neotropical species under threat. The drivers of this situation appear to be manifold and mainly of anthropogenic origin. However, this assessment is based on the last extensive consultation about the conservation situation of parrots carried out in the 1990s. Given the rapid development of anthropogenic threats, updated data are needed to strategize conservation actions. Using a population approach, we addressed this need through a wide-ranging consultation involving biologists, wildlife managers, government agencies and non-governmental conservation organizations. We gathered up-to-date information on threats affecting 192 populations of 96 Neotropical parrot species across 21 countries. Moreover, we investigated associations among current threats and population trends. Many populations were affected by multiple threats. Agriculture, Capture for the Pet Trade, Logging, each of them affected > 55% of the populations, suggesting a higher degree of risk than previously thought. In contrast to previous studies at the species level, our study showed that the threat most closely associated with decreasing population trends is now Capture for the local Pet Trade. Other threats associated with decreasing populations include Small-holder Farming, Rural Population Pressure, Nest Destruction by Poachers, Agro-industry Grazing, Small-holder Grazing, and Capture for the international Pet Trade. Conservation actions have been implemented on < 20% of populations. Our results highlight the importance of a population-level approach in revealing the extent of threats to wild populations. It is critical to increase the scope of conservation actions to reduce the capture of wild parrots for pets