Whole-genome sequencing reveals host factors underlying critical COVID-19

Critical COVID-19 is caused by immune-mediated inflammatory lung injury. Host genetic variation influences the development of illness requiring critical care1 or hospitalization2,3,4 after infection with SARS-CoV-2. The GenOMICC (Genetics of Mortality in Critical Care) study enables the comparison of genomes from individuals who are critically ill with those of population controls to find underlying disease mechanisms. Here we use whole-genome sequencing in 7,491 critically ill individuals compared with 48,400 controls to discover and replicate 23 independent variants that significantly predispose to critical COVID-19. We identify 16 new independent associations, including variants within genes that are involved in interferon signalling (IL10RB and PLSCR1), leucocyte differentiation (BCL11A) and blood-type antigen secretor status (FUT2). Using transcriptome-wide association and colocalization to infer the effect of gene expression on disease severity, we find evidence that implicates multiple genes—including reduced expression of a membrane flippase (ATP11A), and increased expression of a mucin (MUC1)—in critical disease. Mendelian randomization provides evidence in support of causal roles for myeloid cell adhesion molecules (SELE, ICAM5 and CD209) and the coagulation factor F8, all of which are potentially druggable targets. Our results are broadly consistent with a multi-component model of COVID-19 pathophysiology, in which at least two distinct mechanisms can predispose to life-threatening disease: failure to control viral replication; or an enhanced tendency towards pulmonary inflammation and intravascular coagulation. We show that comparison between cases of critical illness and population controls is highly efficient for the detection of therapeutically relevant mechanisms of disease

Does aquaculture add resilience to the global food system?

Aquaculture is the fastest growing food sector and continues to expand alongside terrestrial crop and livestock production. Using portfolio theory as a conceptual framework, we explore how current interconnections between the aquaculture, crop, livestock, and fisheries sectors act as an impediment to, or an opportunity for, enhanced resilience in the global food system given increased resource scarcity and climate change. Aquaculture can potentially enhance resilience through improved resource use efficiencies and increased diversification of farmed species, locales of production, and feeding strategies. However, aquaculture’s reliance on terrestrial crops and wild fish for feeds, its dependence on freshwater and land for culture sites, and its broad array of environmental impacts diminishes its ability to add resilience. Feeds for livestock and farmed fish that are fed rely largely on the same crops, although the fraction destined for aquaculture is presently small (∼4%). As demand for high-value fed aquaculture products grows, competition for these crops will also rise, as will the demand for wild fish as feed inputs. Many of these crops and forage fish are also consumed directly by humans and provide essential nutrition for low-income households. Their rising use in aquafeeds has the potential to increase price levels and volatility, worsening food insecurity among the most vulnerable populations. Although the diversification of global food production systems that includes aquaculture offers promise for enhanced resilience, such promise will not be realized if government policies fail to provide adequate incentives for resource efficiency, equity, and environmental protection

Efeito de sementes oleaginosas inteiras e óleo de soja sobre a digestibilidade in vitro e os padrões ruminais de bezerros holandeses Effect of oleaginous whole seeds and soybean oil on the in vitro digestibility and ruminal pattern in holstein calves

Este trabalho foi realizado para comparar os efeitos da adição de sementes inteiras de soja e algodão e de óleo de soja sobre os padrões ruminais e a digestibilidade in vitro, em bezerros Holandeses fistulados. Dois bezerros fistulados no rúmen foram alimentados com dieta basal com 2,5% de extrato etéreo (EE), o qual foi comparado com dietas com 5,0% de EE, em que as sementes de soja e algodão inteira ou o óleo de soja foram fontes de EE adicional. A adição de sementes de soja e de algodão resultou em decréscimo na digestibilidade in vitro da matéria seca e da fibra em detergente neutro (FDN), porém não houve alterações na digestibilidade in vitro da fibra em detergente ácido (FDA) em relação à dieta controle. A adição de semente algodão provocou decréscimo na digestibilidade in vitro da proteína bruta em comparação à dieta controle. A concentração de ácido propiônico nas dietas com adição de óleo de soja foi 16% mais elevada que a proporcionada pelas demais dietas. O uso de óleo de soja pareceu ser a mais adequada em relação à digestibilidade da matéria seca, FDA e FDN e à manutenção de pH, quando comparado a outros tipos de adição lipídica, porém menos eficiente que a semente de soja em relação à digestibilidade in vitro da proteína bruta. O número de protozoários apresentou grande variação entre dietas, mas nenhum efeito com adição de óleo foi observado. A maior concentração de N-NH3 ruminal foi obtida na dieta com óleo de soja, quando comparada às outras dietas.<br>This work was conducted to compare the effects of whole soybean and cotton seeds and soybean oil on the ruminal pattern and in vitro disappearance, in fistulated Holstein calves. Two calves fitted with rumen cannula were fed a basal diet with 2.5% of ether extract (EE), which was compared with 5.0% EE, where whole soybean, whole cotton seeds or soybean oil were the source of additional EE. The addition of whole soybean and cottonseed resulted in decrease on in vitro dry matter and neutral detergent fiber disappearance, however there was no alteration in the in vitro acid detergent fiber disappearance in relation to the control diet. The addition of whole cottonseed decreased the crude protein in vitro disappearance compared to control diet. The propionic acid concentration in the diets with addition of soybean oil was 16% higher than that proportionated by the other diets. The use of soybean oil seems to be the most adequate in relation to dry matter, in vitro NDF, ADF disappearance and pH maintenance, when compared to the others types of lipid addition, however less efficiently than the soybean seed in relation to in vitro protein crude disappearance. The protozoa number presented great changes among diets, but no effect with oil addition was reported. The higher N-NH3 ruminal concentration was reported in the diet with soybean oil when compared with the other diets