A forward genetics approach integrating genome-wide association study and expression quantitative trait locus mapping to dissect leaf development in maize (Zea mays)

The characterization of the genetic basis of maize (Zea mays) leaf development may support breeding efforts to obtain plants with higher vigor and productivity. In this study, a mapping panel of 197 biparental and multiparental maize recombinant inbred lines (RILs) was analyzed for multiple leaf traits at the seedling stage. RNA sequencing was used to estimate the transcription levels of 29\ua0573 gene models in RILs and to derive 373\ua0769 single nucleotide polymorphisms (SNPs), and a forward genetics approach combining these data was used to pinpoint candidate genes involved in leaf development. First, leaf traits were correlated with gene expression levels to identify transcript\u2013trait correlations. Then, leaf traits were associated with SNPs in a genome-wide association (GWA) study. An expression quantitative trait locus mapping approach was followed to associate SNPs with gene expression levels, prioritizing candidate genes identified based on transcript\u2013trait correlations and GWAs. Finally, a network analysis was conducted to cluster all transcripts in 38 co-expression modules. By integrating forward genetics approaches, we identified 25 candidate genes highly enriched for specific functional categories, providing evidence supporting the role of vacuolar proton pumps, cell wall effectors, and vesicular traffic controllers in leaf growth. These results tackle the complexity of leaf trait determination and may support precision breeding in maize

Time resolved and temperature dependence of the radiative properties of thiol-capped CdS nanoparticles films

In this work, we present the temperature-dependence and time-resolved photoluminescence (PL) of CdS nanoparticles capped independently with three different ligands thiophenol, thioglycerol, and l-cysteine over a broad temperature range from 10 to 300 K. The respective nanoparticles sizes in the three systems studied in this work are 1.5, 4, and 2 nm as determined from X-ray diffraction (XRD). From the analysis of AFM images, it was found that the lateral particle sizes of capped CdS nanoparticles are greater than those deduced from XRD or optical absorption measurements. The aim of this study is the investigation of the impact of the organic ligands on the radiative recombination dynamics in organically capped CdS nanoparticles. From the PL study and based on the temperature-dependence and time-resolved emission spectroscopy, we conclude that the emission of CdS QDs film originates from recombination of the delocalized carriers in the internal core states with a small contribution of the localized carriers at the interface. The PL decay reveals a biexponential behavior for the entire three samples at all temperatures. One of the two exponential components decays rapidly with a time τ(1) in the range 0.5–0.8 ns, whereas the other decays much more slowly, with a time τ(2) in the range 1–3 ns. The weak activation energy (32–37 meV) deduced from the temperature dependence of the PL intensity suggests the involvement of shallow traps. The analysis of the experimental results reveals a relatively narrow size distribution, an efficient surface passivation, and a satisfactory thermal stability of CdS nanocrystals

Inverse EEG source problems and approximation

International audienceWe consider the inverse EEG (ElectroEncephaloGraphy) problem that consists in recovering, from measurements on electrodes of the electric potential on the scalp, a distribution of pointwise dipolar current sources located in the brain and modeling e.g. the presence of epileptic foci

Water management options for rice cultivation in a temperate area : a multi-objective model to explore economic and water saving results

Due to the changing climatic and environmental conditions, modifications in agricultural and water policies have been made, and irrigated agriculture has to face the challenge of making a rational and optimal use of the water resource effectively available. This urges rice farming, strongly and traditionally linked to water, to change the modalities for the use of the resource. If on one hand water saving techniques should be preferred, a different water management in paddy fields may lead to lower yields and higher production costs, with consequent repercussions on farm incomes. The paper recognizes the disagreement between environmental and economic concerns and aims at contributing to the discussion about how to reconcile them by adopting alternative irrigation strategies. From this perspective, a multi-objective linear optimization model is used to explore the trade-offs between conflicting objectives in a rice-growing area in Northern Italy. The model returns the optimal allocation of land subject to three different irrigation strategies, as those previously performed in experimental fields; in addition, a scenario analysis is run to simulate reduced resource availability. Results demonstrate the key role of prioritizing one objective over the other, while introducing cultivars more suitable for dry cultivation enables enlarging the frontier of optimal solutions

Economic Performance of Traditional and Modern Rice Varieties under Different Water Management Systems

Italian rice production is progressively threatened by water scarcity. Some strategies have been developed to reduce water use. Nevertheless, reducing water irrigation amounts may lower paddy rice production. This publication compares the productivity and the economic performances of traditional and modern rice varieties in northern Italy using two different water management systems. The objective of this analysis is to enhance Italian rice cultivation at the economic, environmental and agronomic levels. Some positive variations of water productivity and economic water productivity were observed for the two varieties when using a lower amount of irrigation water. However, actual production costs and most water supply fees are the same for all the irrigation methods. Furthermore, the study of agronomic traits shows that during the recent years, there were no significant differences or increases of yield among varieties. Consequently, to be adopted by farmers, the irrigation costs coupled with improved rice accessions need to be optimized

Interior Regularity Estimates in High Conductivity Homogenization and Application

In this paper, uniform pointwise regularity estimates for the solutions of conductivity equations are obtained in a unit conductivity medium reinforced by a epsilon-periodic lattice of highly conducting thin rods. The estimates are derived only at a distance epsilon^{1+tau} (for some tau>0) away from the fibres. This distance constraint is rather sharp since the gradients of the solutions are shown to be unbounded locally in L^p as soon as p>2. One key ingredient is the derivation in dimension two of regularity estimates to the solutions of the equations deduced from a Fourier series expansion with respect to the fibres direction, and weighted by the high-contrast conductivity. The dependence on powers of epsilon of these two-dimensional estimates is shown to be sharp. The initial motivation for this work comes from imaging, and enhanced resolution phenomena observed experimentally in the presence of micro-structures. We use these regularity estimates to characterize the signature of low volume fraction heterogeneities in the fibred reinforced medium assuming that the heterogeneities stay at a distance epsilon^{1+tau} away from the fibres

Unpublished Mediterranean and Black Sea records of marine alien, cryptogenic, and neonative species

To enrich spatio-temporal information on the distribution of alien, cryptogenic, and neonative species in the Mediterranean and the Black Sea, a collective effort by 173 marine scientists was made to provide unpublished records and make them open access to the scientific community. Through this effort, we collected and harmonized a dataset of 12,649 records. It includes 247 taxa, of which 217 are Animalia, 25 Plantae and 5 Chromista, from 23 countries surrounding the Mediterranean and the Black Sea. Chordata was the most abundant taxonomic group, followed by Arthropoda, Mollusca, and Annelida. In terms of species records, Siganus luridus, Siganus rivulatus, Saurida lessepsianus, Pterois miles, Upeneus moluccensis, Charybdis (Archias) longicollis, and Caulerpa cylindracea were the most numerous. The temporal distribution of the records ranges from 1973 to 2022, with 44% of the records in 2020–2021. Lethrinus borbonicus is reported for the first time in the Mediterranean Sea, while Pomatoschistus quagga, Caulerpa cylindracea, Grateloupia turuturu, and Misophria pallida are first records for the Black Sea; Kapraunia schneideri is recorded for the second time in the Mediterranean and for the first time in Israel; Prionospio depauperata and Pseudonereis anomala are reported for the first time from the Sea of Marmara. Many first country records are also included, namely: Amathia verticillata (Montenegro), Ampithoe valida (Italy), Antithamnion amphigeneum (Greece), Clavelina oblonga (Tunisia and Slovenia), Dendostrea cf. folium (Syria), Epinephelus fasciatus (Tunisia), Ganonema farinosum (Montenegro), Macrorhynchia philippina (Tunisia), Marenzelleria neglecta (Romania), Paratapes textilis (Tunisia), and Botrylloides diegensis (Tunisia)

Mapping geographical inequalities in access to drinking water and sanitation facilities in low-income and middle-income countries, 2000-17

Background: Universal access to safe drinking water and sanitation facilities is an essential human right, recognised in the Sustainable Development Goals as crucial for preventing disease and improving human wellbeing. Comprehensive, high-resolution estimates are important to inform progress towards achieving this goal. We aimed to produce high-resolution geospatial estimates of access to drinking water and sanitation facilities. Methods: We used a Bayesian geostatistical model and data from 600 sources across more than 88 low-income and middle-income countries (LMICs) to estimate access to drinking water and sanitation facilities on continuous continent-wide surfaces from 2000 to 2017, and aggregated results to policy-relevant administrative units. We estimated mutually exclusive and collectively exhaustive subcategories of facilities for drinking water (piped water on or off premises, other improved facilities, unimproved, and surface water) and sanitation facilities (septic or sewer sanitation, other improved, unimproved, and open defecation) with use of ordinal regression. We also estimated the number of diarrhoeal deaths in children younger than 5 years attributed to unsafe facilities and estimated deaths that were averted by increased access to safe facilities in 2017, and analysed geographical inequality in access within LMICs. Findings: Across LMICs, access to both piped water and improved water overall increased between 2000 and 2017, with progress varying spatially. For piped water, the safest water facility type, access increased from 40·0% (95% uncertainty interval [UI] 39·4–40·7) to 50·3% (50·0–50·5), but was lowest in sub-Saharan Africa, where access to piped water was mostly concentrated in urban centres. Access to both sewer or septic sanitation and improved sanitation overall also increased across all LMICs during the study period. For sewer or septic sanitation, access was 46·3% (95% UI 46·1–46·5) in 2017, compared with 28·7% (28·5–29·0) in 2000. Although some units improved access to the safest drinking water or sanitation facilities since 2000, a large absolute number of people continued to not have access in several units with high access to such facilities (>80%) in 2017. More than 253 000 people did not have access to sewer or septic sanitation facilities in the city of Harare, Zimbabwe, despite 88·6% (95% UI 87·2–89·7) access overall. Many units were able to transition from the least safe facilities in 2000 to safe facilities by 2017; for units in which populations primarily practised open defecation in 2000, 686 (95% UI 664–711) of the 1830 (1797–1863) units transitioned to the use of improved sanitation. Geographical disparities in access to improved water across units decreased in 76·1% (95% UI 71·6–80·7) of countries from 2000 to 2017, and in 53·9% (50·6–59·6) of countries for access to improved sanitation, but remained evident subnationally in most countries in 2017. Interpretation: Our estimates, combined with geospatial trends in diarrhoeal burden, identify where efforts to increase access to safe drinking water and sanitation facilities are most needed. By highlighting areas with successful approaches or in need of targeted interventions, our estimates can enable precision public health to effectively progress towards universal access to safe water and sanitation