Simultaneous multi-band detection of Low Surface Brightness galaxies with Markovian modelling

We present an algorithm for the detection of Low Surface Brightness (LSB) galaxies in images, called MARSIAA (MARkovian Software for Image Analysis in Astronomy), which is based on multi-scale Markovian modeling. MARSIAA can be applied simultaneously to different bands. It segments an image into a user-defined number of classes, according to their surface brightness and surroundings - typically, one or two classes contain the LSB structures. We have developed an algorithm, called DetectLSB, which allows the efficient identification of LSB galaxies from among the candidate sources selected by MARSIAA. To assess the robustness of our method, the method was applied to a set of 18 B and I band images (covering 1.3 square degrees in total) of the Virgo cluster. To further assess the completeness of the results of our method, both MARSIAA, SExtractor, and DetectLSB were applied to search for (i) mock Virgo LSB galaxies inserted into a set of deep Next Generation Virgo Survey (NGVS) gri-band subimages and (ii) Virgo LSB galaxies identified by eye in a full set of NGVS square degree gri images. MARSIAA/DetectLSB recovered ~20% more mock LSB galaxies and ~40% more LSB galaxies identified by eye than SExtractor/DetectLSB. With a 90% fraction of false positives from an entirely unsupervised pipeline, a completeness of 90% is reached for sources with r_e > 3" at a mean surface brightness level of mu_g=27.7 mag/arcsec^2 and a central surface brightness of mu^0 g=26.7 mag/arcsec^2. About 10% of the false positives are artifacts, the rest being background galaxies. We have found our method to be complementary to the application of matched filters and an optimized use of SExtractor, and to have the following advantages: it is scale-free, can be applied simultaneously to several bands, and is well adapted for crowded regions on the sky.Comment: 39 pages, 18 figures, accepted for publication in A

An improved time of flight gamma-ray telescope to monitor diffuse gamma-ray in the energy range 5 MeV - 50 MeV

A time of flight measuring device is the basic triggering system of most of medium and high energy gamma-ray telescopes. A simple gamma-ray telescope has been built in order to check in flight conditions the functioning of an advanced time of flight system. The technical ratings of the system are described. This telescope has been flown twice with stratospheric balloons, its axis being oriented at various Zenital directions. Flight results are presented for diffuse gamma-rays, atmospheric secondaries, and various causes of noise in the 5 MeV-50 MeV energy range

Ecosystem carbon 7 dioxide fluxes after disturbance in forests of North America

Disturbances are important for renewal of North American forests. Here we summarize more than 180 site years of eddy covariance measurements of carbon dioxide flux made at forest chronosequences in North America. The disturbances included stand-replacing fire (Alaska, Arizona, Manitoba, and Saskatchewan) and harvest (British Columbia, Florida, New Brunswick, Oregon, Quebec, Saskatchewan, and Wisconsin) events, insect infestations (gypsy moth, forest tent caterpillar, and mountain pine beetle), Hurricane Wilma, and silvicultural thinning (Arizona, California, and New Brunswick). Net ecosystem production (NEP) showed a carbon loss from all ecosystems following a stand-replacing disturbance, becoming a carbon sink by 20 years for all ecosystems and by 10 years for most. Maximum carbon losses following disturbance (g C m−2y−1) ranged from 1270 in Florida to 200 in boreal ecosystems. Similarly, for forests less than 100 years old, maximum uptake (g C m−2y−1) was 1180 in Florida mangroves and 210 in boreal ecosystems. More temperate forests had intermediate fluxes. Boreal ecosystems were relatively time invariant after 20 years, whereas western ecosystems tended to increase in carbon gain over time. This was driven mostly by gross photosynthetic production (GPP) because total ecosystem respiration (ER) and heterotrophic respiration were relatively invariant with age. GPP/ER was as low as 0.2 immediately following stand-replacing disturbance reaching a constant value of 1.2 after 20 years. NEP following insect defoliations and silvicultural thinning showed lesser changes than stand-replacing events, with decreases in the year of disturbance followed by rapid recovery. NEP decreased in a mangrove ecosystem following Hurricane Wilma because of a decrease in GPP and an increase in ER

Reproducibility of Ba/Ca variations recorded by northeast Pacific bamboo corals

Author Posting. © American Geophysical Union, 2017. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Paleoceanography 32 (2017): 966–979, doi:10.1002/2017PA003178.Trace elemental ratios preserved in the calcitic skeleton of bamboo corals have been shown to serve as archives of past ocean conditions. The concentration of dissolved barium (BaSW), a bioactive nutrientlike element, is linked to biogeochemical processes such as the cycling and export of nutrients. Recent work has calibrated bamboo coral Ba/Ca, a new BaSW proxy, using corals spanning the oxygen minimum zone beneath the California Current System. However, it was previously unclear whether Ba/Cacoral records were internally reproducible. Here we investigate the accuracy of using laser ablation inductively coupled plasma mass spectrometry for Ba/Cacoral analyses and test the internal reproducibility of Ba/Ca among replicate radial transects in the calcite of nine bamboo corals collected from the Gulf of Alaska (643–720 m) and the California margin (870–2054 m). Data from replicate Ba/Ca transects were aligned using visible growth bands to account for nonconcentric growth; smoothed data were reproducible within ~4% for eight corals (n = 3 radii/coral). This intracoral reproducibility further validates using bamboo coral Ba/Ca for BaSW reconstructions. Sections of the Ba/Ca records that were potentially influenced by noncarbonate bound Ba phases occurred in regions where elevated Mg/Ca or Pb/Ca and coincided with anomalous regions on photomicrographs. After removing these regions of the records, increased Ba/Cacoral variability was evident in corals between ~800 and 1500 m. These findings support additional proxy validation to understand BaSW variability on interannual timescales, which could lead to new insights into deep sea biogeochemistry over the past several centuries.NSF Grant Number: OCE-1420984; NOAA/OE Grant Number: NA16RP2637; MIT-WHOI Joint Program; American Geophysical Union Travel Grant; UC Davis President's Undergraduate Fellowship; Bowdoin College Gibbons Summer Research Fellowship2018-03-1

Psychotic features, particularly mood incongruence, as a hallmark of severity of bipolar I disorder.

The occurrence of psychotic features within mood episodes in patients with bipolar I disorder (BD I) has been associated in some studies with a more severe clinical and socio-professional profile. In contrast, other studies establishing the associations of psychotic features in BD I, and in particular of mood-congruent (MC) and mood-incongruent (MI) features, with clinical characteristics have yielded contradictory results. However, many pre-existing studies have been affected by serious methodological limitations. Using a sample of thoroughly assessed patients with BD I our aims were to: (1) establish the proportion of those with MI and MC features, and (2) compare BD I patients with and without psychotic features as well as those with MI to those with MC features on a wide array of socio-demographic and clinical characteristics including course, psychiatric comorbidity and treatment. A sample of 162 treated patients with BD I (60.5% female, mean age = 41.4 (s.d: 10.2) years) was recruited within a large family study of mood disorders. Clinical, course and treatment characteristics relied on information elicited through direct diagnostic interviews, family history reports and medical records. (1) A total of 96 patients (59.3%) had experienced psychotic features over their lifetime. Among them, 44.8% revealed MI features at least once in their lives. (2) Patients with psychotic features were much less likely to be professionally active, revealed alcohol abuse more frequently and used health care, particularly inpatient treatment, more frequently than those without psychotic features. Within patients with psychotic symptoms, those with MI features showed more clinical severity in terms of a higher likelihood of reporting hallucinations, suicidal attempts and comorbid cannabis dependence. Our data provide additional support for both the distinction between BD-I with and without psychotic features as well as the distinction between MI and MC psychotic features. The more severe course of patients with psychotic features, and particularly those with MI psychotic features, highlights the need for thorough psychopathological evaluations to assess the presence of these symptoms to install appropriate treatment

PMF the front end electronic for the ALFA detector

International audienceThe PMF (Photo Multiplier Front end) is the front end electronics designed for the ATLAS luminometer ALFA (Absolute Luminosity For ATLAS) made of 20 staggered U-V scintillating fiber layers inserted in Roman Pots (eight in total). Each of these plans is made of 64 fibers. The PMF consists of a 64 channels photomultiplier (MAPMT) and a very compact stack of three different PCBs (3x3 cm2), mounted directly on the back and in the shadow of the MAPMT: a board which brings the high voltage to the MAPMT, an intermediate board used to send the signals to connectors located on the edge and, finally, a board with the readout chip MAROC (Multi Anode Read Out Chip), directly bonded on the PCB, on one side and a FPGA on the other. The 64 inputs MAROC ASIC allows correcting for the gain spread of MAPMT channels thanks to a 6 bits variable gain preamplifier. For each channel the signal is shaped (fast shaper, 15ns) and discriminated to produce a trigger output. A multiplexed charge output is also produced both in analog and digital thanks to a Wilkinson ADC. The main requirements are the following: 100 % trigger efficiency for a signal greater than 1/3 of a photoelectron, a charge measurement up to 30 photoelectrons with a linearity of 2 % or better and a cross talk of 1 % or less. The performances of the second version of MAROC were checked successfully during the year 2007 at LAL-Orsay. A nice dispersion of the trigger output (± 5 fC) was, in particular, observed. A sample of PMFs was produced during autumn 2007 as a prototype. Laboratory tests were performed both at LAL and CERN respectively on the third PCB (the one with MAROC) and on a full PMF equipped with a MAPMT illuminated by a LED. They were carried out using dedicated test board and acquisition software and have allowed the approval of the design and the green light for the final production and integration with the detector. Beam tests of a complete Roman Pot, equipped with 23 PMFs, will take place during summer 2008 for two periods and will conclude the test phase and mark the beginning of the final production

Hadron beam test of a scintillating fibre tracker system for elastic scattering and luminosity measurement in ATLAS

A scintillating fibre tracker is proposed to measure elastic proton scattering at very small angles in the ATLAS experiment at CERN. The tracker will be located in so-called Roman Pot units at a distance of 240 m on each side of the ATLAS interaction point. An initial validation of the design choices was achieved in a beam test at DESY in a relatively low energy electron beam and using slow off-the-shelf electronics. Here we report on the results from a second beam test experiment carried out at CERN, where new detector prototypes were tested in a high energy hadron beam, using the first version of the custom designed front-end electronics. The results show an adequate tracking performance under conditions which are similar to the situation at the LHC. In addition, the alignment method using so-called overlap detectors was studied and shown to have the expected precision.Comment: 12 pages, 8 figures. Submitted to Journal of Instrumentation (JINST

On Passion and Sports Fans:A Look at Football

The purpose of the present research was to test the applicability of the Dualistic Model of Passion (Vallerand et al., 2003) to being a sport (football) fan. The model posits that passion is a strong inclination toward an activity that individuals like (or even love), that they value, and in which they invest time and energy. Furthermore, two types of passion are proposed: harmonious and obsessive passion. While obsessive passion entails an uncontrollable urge to engage in the passionate activity, harmonious passion entails a sense of volition while engaging in the activity. Finally, the model posits that harmonious passion leads to more adaptive outcomes than obsessive passion. Three studies provided support for this dualistic conceptualization of passion. Study 1 showed that harmonious passion was positively associated with adaptive behaviours (e.g., celebrate the team’s victory), while obsessive passion was rather positively associated with maladaptive behaviours (e.g., to risk losing one’s employment to go to the team’s game). Study 2 used a short Passion Scale and showed that harmonious passion was positively related to the positive affective life of fans during the 2006 FIFA World Cup, psychological health (self-esteem and life satisfaction), and public displays of adaptive behaviours (e.g., celebrating one’s team victory in the streets), while obsessive passion was predictive of maladaptive affective life (e.g., hating opposing team’s fans) and behaviours (e.g., mocking the opposing team’s fans). Finally, Study 3 examined the role of obsessive passion as a predictor of partner’s conflict that in turn undermined partner’s relationship satisfaction. Overall, the present results provided support for the Dualistic Model of Passion. The conceptual and applied implications of the findings are discussed

The Effects of Climate Change on Harp Seals (Pagophilus groenlandicus)

Harp seals (Pagophilus groenlandicus) have evolved life history strategies to exploit seasonal sea ice as a breeding platform. As such, individuals are prepared to deal with fluctuations in the quantity and quality of ice in their breeding areas. It remains unclear, however, how shifts in climate may affect seal populations. The present study assesses the effects of climate change on harp seals through three linked analyses. First, we tested the effects of short-term climate variability on young-of-the year harp seal mortality using a linear regression of sea ice cover in the Gulf of St. Lawrence against stranding rates of dead harp seals in the region during 1992 to 2010. A similar regression of stranding rates and North Atlantic Oscillation (NAO) index values was also conducted. These analyses revealed negative correlations between both ice cover and NAO conditions and seal mortality, indicating that lighter ice cover and lower NAO values result in higher mortality. A retrospective cross-correlation analysis of NAO conditions and sea ice cover from 1978 to 2011 revealed that NAO-related changes in sea ice may have contributed to the depletion of seals on the east coast of Canada during 1950 to 1972, and to their recovery during 1973 to 2000. This historical retrospective also reveals opposite links between neonatal mortality in harp seals in the Northeast Atlantic and NAO phase. Finally, an assessment of the long-term trends in sea ice cover in the breeding regions of harp seals across the entire North Atlantic during 1979 through 2011 using multiple linear regression models and mixed effects linear regression models revealed that sea ice cover in all harp seal breeding regions has been declining by as much as 6 percent per decade over the time series of available satellite data

Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks

© 2019, The Author(s), under exclusive licence to Springer Nature America, Inc. Microbiomes from every environment contain a myriad of uncultivated archaeal and bacterial viruses, but studying these viruses is hampered by the lack of a universal, scalable taxonomic framework. We present vConTACT v.2.0, a network-based application utilizing whole genome gene-sharing profiles for virus taxonomy that integrates distance-based hierarchical clustering and confidence scores for all taxonomic predictions. We report near-identical (96%) replication of existing genus-level viral taxonomy assignments from the International Committee on Taxonomy of Viruses for National Center for Biotechnology Information virus RefSeq. Application of vConTACT v.2.0 to 1,364 previously unclassified viruses deposited in virus RefSeq as reference genomes produced automatic, high-confidence genus assignments for 820 of the 1,364. We applied vConTACT v.2.0 to analyze 15,280 Global Ocean Virome genome fragments and were able to provide taxonomic assignments for 31% of these data, which shows that our algorithm is scalable to very large metagenomic datasets. Our taxonomy tool can be automated and applied to metagenomes from any environment for virus classification