Two Loci, RiAF3 and RiAF4, Contribute to the Annual-Fruiting Trait in Rubus

Most Rubus species have a biennial cycle of flowering and fruiting with an intervening period of winter dormancy, in common with many perennial fruit crops. Annual-fruiting (AF) varieties of raspberry (Rubus idaeus and Rubus occidentalis L.) and blackberry (Rubus subgenus Rubus) are able to flower and fruit in one growing season, without the intervening dormant period normally required in biennial-fruiting (BF) varieties. We used a red raspberry (R. idaeus) population segregating for AF obtained from a cross between NC493 and ‘Chilliwack’ to identify genetic factors controlling AF. Genotyping by sequencing (GBS) was used to generate saturated linkage maps in both parents. Trait mapping in this population indicated that AF is controlled by two newly identified loci (RiAF3 and RiAF4) located on Rubus linkage groups (LGs) 3 and 4. The location of these loci was analyzed using single-nucleotide polymorphism (SNP) markers on independent red raspberry and blackberry populations segregating for the AF trait. This confirmed that AF in Rubus is regulated by loci on LG 3 and 4, in addition to a previously reported locus on LG 7. Comparative RNAseq analysis at the time of floral bud differentiation in an AF and a BF variety revealed candidate genes potentially regulating the trait.info:eu-repo/semantics/publishedVersio

Emerging contaminants of high concern for the environment: Current trends and future research

Wastewater is contaminated water that must be treated before it may be transferred into other rivers and lakes in order to prevent further groundwater pollution. Over the last decade, research has been conducted on a wide variety of contaminants, but the emerging contaminants are those caused primarily by micropollutants, endocrine disruptors (EDs), pesticides, pharmaceuticals, hormones, and toxins, as well as industrially-related synthetic dyes and dye-containing hazardous pollutants. Most emerging pollutants did not have established guidelines, but even at low concentrations they could have harmful effects on humans and aquatic organisms. In order to combat the above ecological threats, huge efforts have been done with a view to boosting the effectiveness of remediation procedures or developing new techniques for the detection, quantification and efficiency of the samples. The increase of interest in biotechnology and environmental engineering gives an opportunity for the development of more innovative ways to water treatment remediation. The purpose of this article is to provide an overview of emerging sources of contaminants, detection technologies, and treatment strategies. The goal of this review is to evaluate adsorption as a method for treating emerging pollutants, as well as sophisticated and cost-effective approaches for treating emerging contaminants

Method Development for Selective and Nontargeted Identification of Nitro Compounds in Diesel Particulate Matter

© 2017 American Chemical Society. Nitro-aromatic compounds are associated with a host of adverse human health and ecological outcomes; however, current methods of detection are limited by the lack of accuracy for the nontargeted identification of nitro compounds. This paper describes the development of a novel, accurate, and selective method of identifying nitro compounds, especially nitro polycyclic aromatic hydrocarbons (PAHs), in complex soot mixtures. For the first time, high-performance liquid chromatography was used in combination with Orbitrap mass spectrometry for the nontargeted identification of nitro compounds. This method was validated on a mixture of 84 standard molecules containing 23 nitro compounds and then applied to a complex soot sample, the National Institute of Standards and Technology standard reference material (SRM) 1650a, to successfully identify 105 masses, 62% of which were monosubstituted nitro compounds. All nitro compounds reported in the latest certificate of analysis (COA) for SRM 1650b were successfully identified except for 1,3-dinitropyrene and 1,6-dinitropyrene. Compounds not reported in the COA of the SRM 1650b, including but not limited to 1,8-dinitropyrene, alkylated nitro-molecules of all masses in the COA of SRM 1650b, nitro-phenylnaphthalene isomers, dinitronaphthalene, nitro-phenols, nitro-keto-PAHs, nitro-carboxylic-PAHs, and other nitro partial polar compounds, were also tentatively identified. Future work will consider a larger set of classes, including isomers. This will help identify the chemical composition of mixtures in order to take proactive approaches to prevent health and environmental hazards

Hyperspectroscopic and microtopographic analyses of salt crust forms on arid, silty clay loam desert soils

This paper describes simultaneous uses of field sampling and hyperspectroscopic approaches to understand the distributions of salt crusts and factors affecting them under field conditions. Samples of salt affected soils and associated salt crusts that represented a range of soil salinities, slope, and moisture contents were gathered from the banks of the Rio Grande. The samples were studied for salt identification by optical microscopy and using a high-resolution spectroradiometer, GER 3700, and for salinity level, and moisture content by the wet chemistry method. The study identified two main groups of salt crusts, contaminated halite and gypsum crusts. Reflectivity was correlated negatively with moisture content and positively with slope value, electrical conductivity and salt quantity. Reflectivity of halite-dominated crusts was higher than those of gypsum. Halite occurred over a greater range and higher slope values of soils than gypsum; however, a positive correlation between the slope and mean reflectivity of both salt crusts was reported. Although reflectivity of salt crusts varied according to changes in moisture content, and the salinity of the soil, moisture content can drastically reduce the reflection more effectively? than the other factors. The data reported indicate the possibility of assessing the type of salt crust by estimation of the ratio of slope and reflectivity to the other variables

Simultaneous enrichment & on-line detection of low-concentration Copper, Cobalt, & Nickel Ions in Water by Near-Infrared diffuse reflectance spectroscopy combined with chemometrics

Sensitive detection of heavy metal ions in water is of great importance considering the effects that heavy metals have on public health. A developed fluidized bed enrichment technique was used to concentrate and detect low concentrations of Cu2+, Co2+, and Ni2+ in water samples by near-IR diffuse reflectance (NIDR) spectroscopy (NIDRS) directly without using any chemicals or reagents. The NIDR spectra of adsorbent were measured on-line, and quantitative detection was achieved by applying a built partial least-squares chemometric model. Sensitivity and accuracy was improved significantly because large-volume mixture solutions were used in the enrichment process. Root mean square error of cross-validation values for Cu2+, Co2+, and Ni2+ were 0.29, 0.41, and 0.35 μg/mL, respectively, with mean relative error values in the acceptable range of 6.56-10.27%. This study confirms the potential application of fluidized bed enrichment combined with NIDRS and chemometrics for the simultaneous detection of trace heavy metal ions in water, with low relative error

Development of new organic-inorganic, hybrid bionanocomposite from cellulose and clay for enhanced removal of Drimarine Yellow HF-3GL dye

© 2020 Elsevier B.V. Cellulose/clay composites were prepared and applied for the adsorption of Drimarine Yellow HF-3GL direct dye. The prepared composites were characterized by FTIR, TGA, EDX, SEM and XRD techniques. Bagasse was used as a cellulose source, while clay was obtained from local source, which was modified chemically before composite preparation. Adsorption efficiencies were compared of composite I and II as a function of contact time, temperature, pH, initial dye concentration and composite dose. Non-linear kinetic and equilibrium isotherm employed and dye adsorption data fitted well to pseudo-second order kinetics model. Among isotherms, the Redlich-Peterson isotherm well defined the sorption process of dye on to composites. Thermodynamic factors (ΔS°, ΔH° and ΔG°) revealed that the sorption process was spontaneous, exothermic and feasible. Cellulose/clay composite I and II removed 88.64% and 89.95% dye with 60 min at pH 2 and 30 °C, respectively. For reusability, desorption was performed using different eluting agents and NaOH showed higher desorption efficiency. For the treatment of wastewater, the developed composites were applied to textile effluents and color removal of (90–96.07%) and (97–98.23%) was achieved using cellulose/clay composite I and II, respectively. The results showed that cellulose/clay composite are efficient for the removal dyes and could possibly be used for the treatment of textile effluents

Challenges and perspectives on innovative technologies for biofuel production and sustainable environmental management

Specifically, human activities, such as those in industry and transportation, have resulted in an increase in the demand for fossil fuels, resulting in severe environmental problems.Throughout this article, we discuss the potential and challenges associated with the production of biofuels from a variety of feedstocks and advances in processing technologies utilizing a range of feedstocks. Based on the conclusion of the study, we conclude that bioenergy is a green alternative to be used for diverse energy needs, once the appropriate conversion processes are applied. The production of biofuels and their use in industries and transportation have significantly reduced the use of fossil fuels. The literature review concluded that producing biofuels from energy crops and microalgae was the most efficient and attractive method. The purpose of this review is to explain all aspects of biofuels and their sustainability criteria. With a particular focus on the role of nanotechnology in biofuel production, this article discusses the most recent advances in biofuel production. A number of emerging techniques have been investigated for improving process quality, including integrated techniques, less energy-intensive distillation strategies, and the use of microorganisms in engineering. A challenging aspect of biofuel production on a large scale remains; therefore, a novel technology must be developed in order to enhance biofuel production in order to meet the challenges and meet future energy needs

Epigenetic-Mediated Antimicrobial Resistance:Host versus Pathogen Epigenetic Alterations

Since the discovery of antibiotics, humans have been benefiting from them by decreasing the morbidity and mortality associated with bacterial infections. However, in the past few decades, misuse of antibiotics has led to the emergence of bacterial infections resistant to multiple drugs, a significant health concern. Bacteria exposed to inappropriate levels of antibiotics lead to several genetic changes, enabling them to survive in the host and become more resistant. Despite the understanding and targeting of genetic-based biochemical changes in the bacteria, the increasing levels of antibiotic resistance are not under control. Many reports hint at the role of epigenetic modifications in the bacterial genome and host epigenetic reprogramming due to interaction with resistant pathogens. Epigenetic changes, such as the DNA-methylation-based regulation of bacterial mutation rates or bacteria-induced histone modification in human epithelial cells, facilitate its long-term survival. In this review article, epigenetic changes leading to the development of antibiotic resistance in clinically relevant bacteria are discussed. Additionally, recent lines of evidence focusing on human host epigenetic changes due to the human–pathogen interactions are presented. As genetic mechanisms cannot explain the transient nature of antimicrobial resistance, we believe that epigenetics may provide new frontiers in antimicrobial discovery.</p

Epigenetic Mediated Antimicrobial Resistance:Host versus Pathogen Epigenetic Alterations

Since the discovery of antibiotics, humans have been benefiting from them by decreasing the morbidity and mortality associated with bacterial infections. However, in the past few decades, misuse of antibiotics has led to the emergence of bacterial infections resistant to multiple drugs, a significant health concern. Bacteria exposed to inappropriate levels of antibiotics lead to several genetic changes, enabling them to survive in the host and become more resistant. Despite the understanding and targeting of genetic-based biochemical changes in the bacteria, the increasing levels of antibiotic resistance are not under control. Many reports hint at the role of epigenetic modifications in the bacterial genome and host epigenetic reprogramming due to interaction with resistant pathogens. Epigenetic changes, such as the DNA-methylation-based regulation of bacterial mutation rates or bacteria-induced histone modification in human epithelial cells, facilitate its long-term survival. In this review article, epigenetic changes leading to the development of antibiotic resistance in clinically relevant bacteria are discussed. Additionally, recent lines of evidence focusing on human host epigenetic changes due to the human–pathogen interactions are presented. As genetic mechanisms cannot explain the transient nature of antimicrobial resistance, we believe that epigenetics may provide new frontiers in antimicrobial discovery

Integrated framework of the immune-defense transcriptional signatures in the arabidopsis shoot apical meristem

© 2020 by the authors. Licensee MDPI, Basel, Switzerland. The growing tips of plants grow sterile; therefore, disease-free plants can be generated from them. How plants safeguard growing apices from pathogen infection is still a mystery. The shoot apical meristem (SAM) is one of the three stem cells niches that give rise to the above ground plant organs. This is very well explored; however, how signaling networks orchestrate immune responses against pathogen infections in the SAM remains unclear. To reconstruct a transcriptional framework of the differentially expressed genes (DEGs) pertaining to various SAM cellular populations, we acquired large-scale transcriptome datasets from the public repository Gene Expression Omnibus (GEO). We identify here distinct sets of genes for various SAM cellular populations that are enriched in immune functions, such as immune defense, pathogen infection, biotic stress, and response to salicylic acid and jasmonic acid and their biosynthetic pathways in the SAM. We further linked those immune genes to their respective proteins and identify interactions among them by mapping a transcriptome-guided SAM-interactome. Furthermore, we compared stem-cells regulated transcriptome with innate immune responses in plants showing transcriptional separation among their DEGs in Arabidopsis. Besides unleashing a repertoire of immune-related genes in the SAM, our analysis provides a SAM-interactome that will help the community in designing functional experiments to study the specific defense dynamics of the SAM-cellular populations. Moreover, our study promotes the essence of large-scale omics data re-analysis, allowing a fresh look at the SAM-cellular transcriptome repurposing data-sets for new questions