Open Access Policy: Numbers, Analysis, Effectiveness

The PASTEUR4OA project analyses what makes an Open Access (OA) policy effective. The total number of institutional or funder OA policies worldwide is now 663 (March 2015), over half of them mandatory. ROARMAP, the policy registry, has been rebuilt to record more policy detail and provide more extensive search functionality. Deposit rates were measured for articles in institutions' repositories and compared to the total number of WoS-indexed articles published from those institutions. Average deposit rate was over four times as high for institutions with a mandatory policy. Six positive correlations were found between deposit rates and (1) Must-Deposit; (2) Cannot-Waive-Deposit; (3) Deposit-Linked-to-Research-Evaluation; (4) Cannot-Waive-Rights-Retention; (5) Must-Make-Deposit-OA (after allowable embargo) and (6) Can-Waive-OA. For deposit latency, there is a positive correlation between earlier deposit and (7) Must-Deposit-Immediately as well as with (4) Cannot-Waive-Rights-Retention and with mandate age. There are not yet enough OA policies to test whether still further policy conditions would contribute to mandate effectiveness but the present findings already suggest that it would be useful for current and future OA policies to adopt the seven positive conditions so as to accelerate and maximise the growth of OA.Comment: 49 pages, 21 figures, 15 tables. Pasteur4OA Work Package 3 report: Open Access policies 201

Biosynthesis Coupled to the Extraction of Geranyl Acetate in a Liquid-Gas System: Optimization of the Transesterification Reaction and Modeling of the Transfer

The objective of this paper was to study the production and the mass transfer of geranyl acetate known for its interesting green odor properties. Lipase-catalyzed geranyl acetate production via transesterification reaction with ethyl acetate in organic solvent was investigated. The production was catalyzed by using immobilized lipase from Rhizomucor miehei, and the recovery was achieved by using solid phase microextraction (SPME) fiber system (50/30 μm DVB/Carboxen/PDMS Coating). The effects of different reaction parameters on transesterification including the enzyme concentration, the substrate molar ratio, the added water, and the reaction time were firstly optimized. A higher yield of 82 % was achieved under near-anhydrous conditions at 55 °C by using an enzyme concentration of 6 % (w/w reactants), a molar ratio of geraniol to ethyl acetate of 1:5, and a reaction time of 6 h. Immobilized lipase was repeatedly used for four cycles with no decrease in reaction yield. The mass transfer of geranyl acetate from the organic to gas phase was studied theoretically and experimentally, and a transfer yield of 52.3 % was obtained. The simulation showed that the Fuller-Schettler-Giddings model exhibited good correlation with the experimental data

Mechanical Strategies to Increase Nutritional and Sensory Quality of Virgin Olive Oil by Modulating the Endogenous Enzyme Activities

This monograph is a critical review of the biological activities that occur during virgin olive oil (VOO) extraction process. Strategic choices of plant engineering systems and of processing technologies should be made to condition the enzymatic activities, in order to modulate the nutritional and the sensory quality of the product toward the consumer expectations. “Modulation” of the product quality properties has the main aim to predetermine the quantity and the quality of 2 classes of substances: polyphenols and volatile compounds responsible of VOO nutritional and sensory characteristics. In the 1st section, a systematic analysis of the literature has been carried out to investigate the main olive enzymatic activities involved in the complex biotransformation that occurs during the mechanical extraction process. In the 2nd section, a critical and interpretative discussion of the influence of each step of the extraction process on the polyphenols and the volatile compounds has been performed. The effect of the different mechanical devices that are part of the extraction process is analyzed and recommendations, strategies, and possible avenues for future researches are suggested. Practical Application In the field of virgin olive oil industry, time and energy should be spent on developing innovative processing plants and equipment able to better modulate the physical parameters that influence endogenous olive enzyme activities, such as temperature, time, amounts of processing water and oxygen. This review paper can be a useful resource to design and develop innovative equipment by offering an exhaustive analysis of mechanical effects of industrial devices and biological effects of endogenous enzymes on the sensory and nutritional properties of virgin olive oil

Evaluation and optimization of a commercial enzyme linked immunosorbent assay for detection of Chlamydophila pneumoniae IgA antibodies

<p>Abstract</p> <p>Background</p> <p>Serologic diagnosis of <it>Chlamydophila pneumoniae </it>(Cpn) infection routinely involves assays for the presence of IgG and IgM antibodies to Cpn. Although IgA antibodies to Cpn have been found to be of interest in the diagnosis of chronic infections, their significance in serological diagnosis remains unclear. The microimmunofluorescence (MIF) test is the current method for the measurement of Cpn antibodies. While commercial enzyme linked immunosorbent assays (ELISA) have been developed, they have not been fully validated. We therefore evaluated and optimized a commercial ELISA kit, the SeroCP IgA test, for the detection of Cpn IgA antibodies.</p> <p>Methods</p> <p>Serum samples from 94 patients with anti-Cpn IgG titers ≥ 256 (study group) and from 100 healthy blood donors (control group) were tested for the presence of IgA antibodies to Cpn, using our in-house MIF test and the SeroCP IgA test. Two graph receiver operating characteristic (TG-ROC) curves were created to optimize the cut off given by the manufacturer.</p> <p>Results</p> <p>The MIF and SeroCP IgA tests detected Cpn IgA antibodies in 72% and 89%, respectively, of sera from the study group, and in 9% and 35%, respectively, of sera from the control group. Using the MIF test as the reference method and the cut-off value of the ELISA test specified by the manufacturer for seropositivity and negativity, the two tests correlated in 76% of the samples, with an agreement of Ƙ = 0.54. When we applied the optimized cut-off value using TG-ROC analysis, 1.65, we observed better concordance (86%) and agreement (0.72) between the MIF and SeroCP IgA tests.</p> <p>Conclusion</p> <p>Use of TG-ROC analysis may help standardize and optimize ELISAs, which are simpler, more objective and less time consuming than the MIF test. Standardization and optimization of commercial ELISA kits may result in better performance.</p

Global burden of human brucellosis : a systematic review of disease frequency

BACKGROUND: This report presents a systematic review of scientific literature published between 1990-2010 relating to the frequency of human brucellosis, commissioned by WHO. The objectives were to identify high quality disease incidence data to complement existing knowledge of the global disease burden and, ultimately, to contribute towards the calculation of a Disability-Adjusted Life Years (DALY) estimate for brucellosis.METHODS/PRINCIPAL FINDINGS: Thirty three databases were searched, identifying 2,385 articles relating to human brucellosis. Based on strict screening criteria, 60 studies were selected for quality assessment, of which only 29 were of sufficient quality for data analysis. Data were only available from 15 countries in the regions of Northern Africa and Middle East, Western Europe, Central and South America, Sub-Saharan Africa, and Central Asia. Half of the studies presented incidence data, six of which were longitudinal prospective studies, and half presented seroprevalence data which were converted to incidence rates. Brucellosis incidence varied widely between, and within, countries. Although study biases cannot be ruled out, demographic, occupational, and socioeconomic factors likely play a role. Aggregated data at national or regional levels do not capture these complexities of disease dynamics and, consequently, at-risk populations or areas may be overlooked. In many brucellosis-endemic countries, health systems are weak and passively-acquired official data underestimate the true disease burden.CONCLUSIONS: High quality research is essential for an accurate assessment of disease burden, particularly in Eastern Europe, the Asia-Pacific, Central and South America and Africa where data are lacking. Providing formal epidemiological and statistical training to researchers is essential for improving study quality. An integrated approach to disease surveillance involving both human health and veterinary services would allow a better understand of disease dynamics at the animal-human interface, as well as a more cost-effective utilisation of resources

Identification of multiple root disease resistant wheat germplasm against cereal nematodes and dryland root rot and their validation in regions of economic importance

História da literatura portuguesa coordenada por Giulia Lanciani - primeiras páginas de um total pp. 7-108)História literária do século XVIII portuguêsGoverno de Portuga

Light induced self-written waveguides interactions in photopolymer media

We present experimental and theoretical study of the interaction of Light Induced Self-Written (LISW) waveguides in photopolymers. We show that the diffusion of the monomer controls the refractive index distribution. Consequently it influences the interaction between the LISW channels allowing the observation of anti-crossing behavior or the propagation of an array of non interacting LISW waveguides

Milk yield estimation during suckling using the double oxytocin injection-milking and the double weighing-suckling methods in dairy goats

The aim was to verify the validity of the double oxytocin-milking (DOT) method as milk yield estimator during the suckling period of lactating dairy goats. To this end, it was necessary to determine whether the weighing suckling weighing (WSW) and DOT methods of milk yield estimation satisfied the criteria to be considered valuable, the accuracy between both methods and the suitability of DOT to evaluate actual milk. At parturition, sixty lactating Murciano Granadina breed goats were separated into 2 groups, in mixed (MS; n = 24) and artificial rearing (ARS; n = 36) management systems. Until the sixth week of lactation (weaning), MS goats suckled one kid while kids from ARS goats were artificially reared; moreover, goats in both systems were submitted to once-a-day milking. Once per week, actual milk yield for ARS goats and potential milk yield were recorded using DOT method for all goats, except for 12 goats in ARS which remained as a control. Twelve goats from each management system were used to evaluate diurnal variation in milk production (DVM) by DOT method for 6 consecutive days in week 4 of lactation. No difference in DVM was found by DOT method in 4-h milk production of goats in MS (P = 0.099) or ARS (P = 0.220), which allowed sixfold multiplication of milked milk volume to obtain potential milk per day. ARS goats subjected to a weekly DOT and control group goats showed a similar (P = 0.379) lactation curve for the first 6 weeks of lactation. The DOT method slightly overestimated (3.4%, P = 0.005) the milk yield evaluated by WSW method for goats under an MS, but fitted the actual milk obtained by common milk records for the group of goats in an ARS submitted to the DVM test (P = 0.357) and the group in ARS alone (P = 0.163). The DOT method applied for 8 consecutive days led to a drop of 6 12% in milk yield during the following week for both production systems. In conclusion, DOT was an accurate method to estimate milk yield during the first weeks of lactation both in MS and ARS under the conditions of this experiment. © 2013 Elsevier B.V. All rights reserved.Fernández Martínez, N.; Balasch Parisi, S.; Pérez Baena, I.; Rodríguez Garcia, M.; Peris Ribera, CJ. (2013). Milk yield estimation during suckling using the double oxytocin injection-milking and the double weighing-suckling methods in dairy goats. Small Ruminant Research. 112(1-3):181-185. doi:10.1016/j.smallrumres.2012.12.023S1811851121-