Geometric phase methods with Stokes theorem for a general viscous swimmer

The geometric phase techniques for swimming in viscous flows express the net displacement of a swimmer as a path integral of a field in configuration space. This representation can be transformed into an area integral for simple swimmers using the Stokes theorem. Since this transformation applies for any loop, the integrand of this area integral can be used to help design these swimmers. However, the extension of this Stokes theorem technique to more complicated swimmers is hampered by problems with variables that do not commute and by how to visualise and understand the higher-dimensional spaces. In this paper, we develop a treatment for each of these problems, thereby allowing the displacement of general swimmers in any environment to be designed and understood similarly to simple swimmers. The net displacement arising from non-commuting variables is tackled by embedding the integral into a higher-dimensional space, which can then be visualised through a suitability constructed surface. These methods are developed for general swimmers and demonstrated on three benchmark examples: Purcell's two-hinged swimmer, an axisymmetric squirmer in free space and an axisymmetric squirmer approaching a free interface. We show in particular that, for swimmers with more than two modes of deformation, there exists an infinite set of strokes that generate each net displacement. Hence, in the absence of additional restrictions, general microscopic swimmers do not have a single stroke that maximises their displacement

Rotation of slender swimmers in isotropic-drag media.

The drag anisotropy of slender filaments is a critical physical property allowing swimming in low-Reynolds number flows, and without it linear translation is impossible. Here we show that, in contrast, net rotation can occur under isotropic drag. We first demonstrate this result formally by considering the consequences of the force- and torque-free conditions on swimming bodies and we then illustrate it with two examples (a simple swimmers made of three rods and a model bacterium with two helical flagellar filaments). Our results highlight the different role of hydrodynamic forces in generating translational versus rotational propulsion.This research was funded in part by the European Union through a Marie Curie CIG grant (EL) and by the Cambridge Trust (LK).This is the author accepted manuscript. It is currently under an indefinite embargo pending publication by the American Physical Society

Local drag of a slender rod parallel to a plane wall in a viscous fluid

The viscous drag on a slender rod by a wall is important to many biological and industrial systems. This drag critically depends on the separation between the rod and the wall and can be approximated asymptotically in specific regimes, namely far from, or very close to, the wall, but is typically determined numerically for general separations. In this article we determine an asymptotic representation of the local drag for a slender rod parallel to a wall which is valid for all separations. This is possible through matching the behavior of a rod close to the wall and a rod far from the wall. We show that the leading order drag in both these regimes has been known since 1981 and that they can be used to produce a composite representation of the drag which is valid for all separations. This is in contrast to a sphere above a wall, where no simple uniformly valid representation exists. We estimate the error on this composite representation as the separation increases, discuss how the results could be used as resistive-force theory, and demonstrate their use on a two-hinged swimmer above a wall

Method of regularised stokeslets: Flow analysis and improvement of convergence

Since their development in 2001, regularised stokeslets have become a popular numerical tool for low-Reynolds number flows since the replacement of a point force by a smoothed blob overcomes many computational difficulties associated with flow singularities (Cortez, 2001, \textit{SIAM J. Sci. Comput.} \textbf{23}, 1204). The physical changes to the flow resulting from this process are, however, unclear. In this paper, we analyse the flow induced by general regularised stokeslets. An explicit formula for the flow from any regularised stokeslet is first derived, which is shown to simplify for spherically symmetric blobs. Far from the centre of any regularised stokeslet we show that the flow can be written in terms of an infinite number of singularity solutions provided the blob decays sufficiently rapidly. This infinite number of singularities reduces to a point force and source dipole for spherically symmetric blobs. Slowly-decaying blobs induce additional flow resulting from the non-zero body forces acting on the fluid. We also show that near the centre of spherically symmetric regularised stokeslets the flow becomes isotropic, which contrasts with the flow anisotropy fundamental to viscous systems. The concepts developed are used to { identify blobs that reduce regularisation errors. These blobs contain regions of negative force in order to counter the flows produced in the regularisation process, but still retain a form convenient for computations

A note on the Stokes phenomenon in flow under an elastic sheet: Stokes Phenomenon in flow under a sheet

The Stokes phenomenon is a class of asymptotic behaviour that was first discovered by Stokes in his study of the Airy function. It has since been shown that the Stokes phenomenon plays a significant role in the behaviour of surface waves on flows past submerged obstacles. A detailed review of recent research in this area is presented, which outlines the role that the Stokes phenomenon plays in a wide range of free surface flow geometries. The problem of inviscid, irrotational, incompressible flow past a submerged step under a thin elastic sheet is then considered. It is shown that the method for computing this wave behaviour is extremely similar to previous work on computing the behaviour of capillary waves. Exponential asymptotics are used to show that free-surface waves appear on the surface of the flow, caused by singular fluid behaviour in the neighbourhood of the base and top of the step. The amplitude of these waves is computed and compared to numerical simulations, showing excellent agreements between the asymptotic theory and computational solutions. This article is part of the theme issue 'Stokes at 200 (part 2)'

The near and far of a pair of magnetic capillary disks.

Control on microscopic scales depends critically on our ability to manipulate interactions with different physical fields. The creation of micro-machines therefore requires us to understand how multiple fields, such as surface capillary or electro-magnetic fields, can be used to produce predictable behaviour. Recently, a spinning micro-raft system was developed that exhibited both static and dynamic self-assembly [Wang et al., Sci. Adv., 2017, 3, e1602522]. These rafts employed both capillary and magnetic interactions and, at a critical driving frequency, would suddenly change from stable orbital patterns to static assembled structures. In this paper, we explain the dynamics of two interacting micro-rafts through a combination of theoretical models and experiments. This is first achieved by identifying the governing physics of the orbital patterns, the assembled structures, and the collapse separately. We find that the orbital patterns are determined by the short range capillary interactions between the disks, while the explanations of the other two behaviours only require the capillary far field. Finally we combine the three models to explain the dynamics of a new micro-raft experiment.ER

Regularized Stokeslets Lines Suitable for Slender Bodies in Viscous Flow

Slender-body approximations have been successfully used to explain many phenomena in low-Reynolds number fluid mechanics. These approximations typically use a line of singularity solutions to represent flow. These singularities can be difficult to implement numerically because they diverge at their origin. Hence, people have regularized these singularities to overcome this issue. This regularization blurs the force over a small blob and thereby removing divergent behaviour. However, it is unclear how best to regularize the singularities to minimize errors. In this paper, we investigate if a line of regularized Stokeslets can describe the flow around a slender body. This is achieved by comparing the asymptotic behaviour of the flow from the line of regularized Stokeslets with the results from slender-body theory. We find that the flow far from the body can be captured if the regularization parameter is proportional to the radius of the slender body. This is consistent with what is assumed in numerical simulations and provides a choice for the proportionality constant. However, more stringent requirements must be placed on the regularization blob to capture the near field flow outside a slender body. This inability to replicate the local behaviour indicates that many regularizations cannot satisfy the no-slip boundary conditions on the body’s surface to leading order, with one of the most commonly used blobs showing an angular dependency of velocity along any cross section. This problem can be overcome with compactly supported blobs, and we construct one such example blob, which can be effectively used to simulate the flow around a slender body.</jats:p

Slender-ribbon theory

Ribbons are long narrow strips possessing three distinct material length scales (thickness, width, and length) which allow them to produce unique shapes unobtainable by wires or filaments. For example when a ribbon has half a twist and is bent into a circle it produces a M\"obius strip. Significant effort has gone into determining the structural shapes of ribbons but less is know about their behavior in viscous fluids. In this paper we determine, asymptotically, the leading-order hydrodynamic behavior of a slender ribbon in Stokes flows. The derivation, reminiscent of slender-body theory for filaments, assumes that the length of the ribbon is much larger than its width, which itself is much larger than its thickness. The final result is an integral equation for the force density on a mathematical ruled surface, termed the ribbon plane, located inside the ribbon. A numerical implementation of our derivation shows good agreement with the known hydrodynamics of long flat ellipsoids, and successfully captures the swimming behavior of artificial microscopic swimmers recently explored experimentally. We also study the asymptotic behavior of a ribbon bent into a helix, that of a twisted ellipsoid, and we investigate how accurately the hydrodynamics of a ribbon can be effectively captured by that of a slender filament. Our asymptotic results provide the fundamental framework necessary to predict the behavior of slender ribbons at low Reynolds numbers in a variety of biological and engineering problems.This research was funded in part by the European Union through a Marie Curie CIG Grant and the Cambridge Trusts.This is the author accepted manuscript. The final version is available from American Institute of Physics via http://dx.doi.org/10.1063/1.493856

The swimming of a deforming helix

Many microorganisms and artificial microswimmers use helical appendages in order to generate locomotion. Though often rotated so as to produce thrust, some species of bacteria such Spiroplasma, Rhodobacter sphaeroides and Spirochetes induce movement by deforming a helical-shaped body. Recently, artificial devices have been created which also generate motion by deforming their helical body in a non-reciprocal way (A. Mourran et al. Adv. Mater. 29, 1604825, 2017). Inspired by these systems, we investigate the transport of a deforming helix within a viscous fluid. Specifically, we consider a swimmer that maintains a helical centreline and a single handedness while changing its helix radius, pitch and wavelength uniformly across the body. We first discuss how a deforming helix can create a non-reciprocal translational and rotational swimming stroke and identify its principle direction of motion. We then determine the leading-order physics for helices with small helix radius before considering the general behaviour for different configuration parameters and how these swimmers can be optimised. Finally, we explore how the presence of walls, gravity, and defects in the centreline allow the helical device to break symmetries, increase its speed, and generate transport in directions not available to helices in bulk fluids

A Light-Driven Microgel Rotor

The current understanding of motility through body shape deformation of micro-organisms and the knowledge of fluid flows at the microscale provides ample examples for mimicry and design of soft microrobots. In this work, a 2D spiral is presented that is capable of rotating by non-reciprocal curling deformations. The body of the microswimmer is a ribbon consisting of a thermoresponsive hydrogel bilayer with embedded plasmonic gold nanorods. Such a system allows fast local photothermal heating and nonreciprocal bending deformation of the hydrogel bilayer under nonequilibrium conditions. It is shown that the spiral acts as a spring capable of large deformations thanks to its low stiffness, which is tunable by the swelling degree of the hydrogel and the temperature. Tethering the ribbon to a freely rotating microsphere enables rotational motion of the spiral by stroboscopic irradiation. The efficiency of the rotor is estimated using resistive force theory for Stokes flow. This research demonstrates microscopic locomotion by the shape change of a spiral and may find applications in the field of microfluidics, or soft microrobotics