Site-specific identification and quantitation of endogenous SUMO modifications under native conditions.

Small ubiquitin-like modifier (SUMO) modification regulates numerous cellular processes. Unlike ubiquitin, detection of endogenous SUMOylated proteins is limited by the lack of naturally occurring protease sites in the C-terminal tail of SUMO proteins. Proteome-wide detection of SUMOylation sites on target proteins typically requires ectopic expression of mutant SUMOs with introduced tryptic sites. Here, we report a method for proteome-wide, site-level detection of endogenous SUMOylation that uses α-lytic protease, WaLP. WaLP digestion of SUMOylated proteins generates peptides containing SUMO-remnant diglycyl-lysine (KGG) at the site of SUMO modification. Using previously developed immuno-affinity isolation of KGG-containing peptides followed by mass spectrometry, we identified 1209 unique endogenous SUMO modification sites. We also demonstrate the impact of proteasome inhibition on ubiquitin and SUMO-modified proteomes using parallel quantitation of ubiquitylated and SUMOylated peptides. This methodological advancement enables determination of endogenous SUMOylated proteins under completely native conditions

Radiation effects in Zr and Hf containing garnets

Garnets have been considered as host phases for the safe immobilisation of high-level nuclear waste, as they have been shown to accommodate a wide range of elements across three different cation sites, such as Ca, Y, Mn on the a-site, Fe, Al, U, Zr, and Ti on the b-site, and Si, Fe, Al on the c-site. Garnets, due to their ability to have variable composition, make ideal model materials for the examination of radiation damage and recovery in nuclear materials, including as potential waste forms. Kimzeyite, Ca3Zr2FeAlSiO12, has been shown naturally to contain up to 30 wt% Zr, and has previously been examined to elucidate both the structure and ordering within the lattice. This study examines the effects of radiation damage and recovery using in-situ ion beam irradiation with 1 MeV Kr ions at the IVEM-TANDEM facility, Argonne National Laboratory. The complementary Hf containing system Ca3Hf2FeAlSiO12 was also examined, and found to have a different response to irradiation damage. A sample of irradiated Ca3Zr2FeAlSiO12, at 1000 K, was characterised using aberration corrected (S)TEM and found to contain discreet, nano-sized, crystalline Fe rich particles, indicating a competing process during recovery is occurring

Thermal recrystallization of alpha-recoil damaged minerals of the pyrochlore structure type

Thermal recrystallization effects (heat of recrystallization and identification of phases formed), have been determined for naturally occurring members of the pyrochlore group which have received alpha doses of up to 4 X 10{sup 16} alphas/mg. The heats of recrystallization, E{sub t}, range from 125 to 210 J/g. Release of energy decreases as a function of crystallinity (estimated on the basis of the intensity of x-ray diffraction maxima), with the fully-metamict samples approaching 210 J/g. Lower measured values (40-125 J/g) are the result of alteration of the pyrochlores. Other metamict, complex oxides with stoichiometries of ABO{sub 4} and AB{sub 2}O{sub 6} have lower heats of recrystallization (40-85 J/g), and are easily distinguished from pyrochlore group minerals. Activation energies of recrystallization, E{sub a}, range between values of 0.29 to 0.97 eV, less than those measured for Pu-doped, synthetic zirconolites

HVEM-Tandem and EELS study of radiation damage in zirconolite

Zirconolite (CaZrTi{sub 2}O{sub 7}) is the major host phase for actinides in Synroc, a promising waste form for the immobilization of high-level radioactive waste. The effect of radiation damage on the structure and durability of zirconolite are important to predictive modeling of zirconolite`s behavior in the repository environment and risk assessment. In this study, radiation damage effects in zirconolite were investigated by irradiating samples with 1.5 MeV Kr{sup +} ions using the HVEM-Tandem at Argonne National Laboratory (ANL) and energy loss electron spectroscopy (EELS). The HVEM-Tandem consists of a modified AEI high voltage transmission electron microscope interfaced to a 2 MV tandem ion accelerator. EELS spectra were collected using a Philips 420 TEM, operated at 120 kV, fitted with a Gatan Model 607 Serial EELS. EELS data were recorded at resolutions of {approximately} 1.0 eV and at a dispersion of about {approximately} 0.25 eV. Selected area diffraction patterns (SADs) of individual grains of various zirconolites were monitored as a function of dose to establish the critical dose for amorphization (D{sub c}). The authors found that (1) D{sub c}(zirconolite) is independent of the atomic weight of dopants in zirconolite and the mean atomic weight of the sample and that (2) the Bragg reflections in SAD patterns which persist to the highest doses are firstly those resulting from the fluorite sublattice and secondly the four (110)-type reflections which lie on the innermost of the two diffuse rings representative of amorphous zirconolite

Naturally-Occurring Zirconolites - Analogues for the Long-Term Encapsulation of Actinides in Synroc

The use of natural zirconolites to assess the effect of α-decay damage and geochemical alteration on the release of actinides from HLW wasteforms is critically examined. There is evidence that the natural zirconolites provide a good chemical and radi-ation damage analogy for the HLW wasteforms, but additional work is required to define the geochemical environments in which zirconolite is stable or unstable (e.g., suffering corrosion or chemical alteration, including loss of actinides)

Self-aligned fabrication process for silicon quantum computer devices

We describe a fabrication process for devices with few quantum bits (qubits), which are suitable for proof-of-principle demonstrations of silicon-based quantum computation. The devices follow the Kane proposal to use the nuclear spins of 31P donors in 28Si as qubits, controlled by metal surface gates and measured using single electron transistors (SETs). The accurate registration of 31P donors to control gates and read-out SETs is achieved through the use of a self-aligned process which incorporates electron beam patterning, ion implantation and triple-angle shadow-mask metal evaporation