Analysis of the Movement of Chlamydomonas Flagella: The Function of the Radial-spoke System Is Revealed by Comparison of Wild-type and Mutant Flagella

The mutation uni-1 gives rise to uniflagellate Chlamydomonas cells which rotate around a fixed point in the microscope field, so that the flagellar bending pattern can be photographed easily . This has allowed us to make a detailed analysis of the wild-type flagellar bending pattern and the bending patterns of flagella on several mutant strains. Cells containing uni-1, and recombinants of uni-1 with the suppressor mutations, sup(_pf)-1 and sup(_pf)-3, show the typical asymmetric bending pattern associated with forward swimming in Chlamydomonas, although sup(_pf)-1 flagella have about one-half the normal beat frequency, apparently as the result of defective function of the outer dynein arms. The pf-17 mutation has been shown to produce nonmotile flagella in which radial spoke heads and five characteristic axonemal polypeptides are missing. Recombinants containing pf-17 and either sup(_pf)-1 or sup(_pf)-3 have motile flagella, but still lack radial-spoke heads and the associated polypeptides . The flagellar bending pattern of these recombinants lacking radial-spoke heads is a nearly symmetric, large amplitude pattern which is quite unlike the wild-type pattern . However, the presence of an intact radial-spoke system is not required to convert active sliding into bending and is not required for bend initiation and bend propagation, since all of these processes are active in the sup(_pf) pf-17 recombinants. The function of the radial-spoke system appears to be to convert the symmetric bending pattern displayed by these recombinants into the asymmetric bending pattern required for efficient swimming, by inhibiting the development of reverse bends during the recovery phase of the bending cycle

Structure of the stationary state of the asymmetric target process

We introduce a novel migration process, the target process. This process is dual to the zero-range process (ZRP) in the sense that, while for the ZRP the rate of transfer of a particle only depends on the occupation of the departure site, it only depends on the occupation of the arrival site for the target process. More precisely, duality associates to a given ZRP a unique target process, and vice-versa. If the dynamics is symmetric, i.e., in the absence of a bias, both processes have the same stationary-state product measure. In this work we focus our interest on the situation where the latter measure exhibits a continuous condensation transition at some finite critical density $\rho_c$, irrespective of the dimensionality. The novelty comes from the case of asymmetric dynamics, where the target process has a nontrivial fluctuating stationary state, whose characteristics depend on the dimensionality. In one dimension, the system remains homogeneous at any finite density. An alternating scenario however prevails in the high-density regime: typical configurations consist of long alternating sequences of highly occupied and less occupied sites. The local density of the latter is equal to $\rho_c$ and their occupation distribution is critical. In dimension two and above, the asymmetric target process exhibits a phase transition at a threshold density $\rho_0$ much larger than $\rho_c$. The system is homogeneous at any density below $\rho_0$, whereas for higher densities it exhibits an extended condensate elongated along the direction of the mean current, on top of a critical background with density $\rho_c$.Comment: 30 pages, 16 figure

Object Segmentation in Images using EEG Signals

This paper explores the potential of brain-computer interfaces in segmenting objects from images. Our approach is centered around designing an effective method for displaying the image parts to the users such that they generate measurable brain reactions. When an image region, specifically a block of pixels, is displayed we estimate the probability of the block containing the object of interest using a score based on EEG activity. After several such blocks are displayed, the resulting probability map is binarized and combined with the GrabCut algorithm to segment the image into object and background regions. This study shows that BCI and simple EEG analysis are useful in locating object boundaries in images.Comment: This is a preprint version prior to submission for peer-review of the paper accepted to the 22nd ACM International Conference on Multimedia (November 3-7, 2014, Orlando, Florida, USA) for the High Risk High Reward session. 10 page

Dynamics at the angle of repose: jamming, bistability, and collapse

When a sandpile relaxes under vibration, it is known that its measured angle of repose is bistable in a range of values bounded by a material-dependent maximal angle of stability; thus, at the same angle of repose, a sandpile can be stationary or avalanching, depending on its history. In the nearly jammed slow dynamical regime, sandpile collapse to a zero angle of repose can also occur, as a rare event. We claim here that fluctuations of {\it dilatancy} (or local density) are the key ingredient that can explain such varied phenomena. In this work, we model the dynamics of the angle of repose and of the density fluctuations, in the presence of external noise, by means of coupled stochastic equations. Among other things, we are able to describe sandpile collapse in terms of an activated process, where an effective temperature (related to the density as well as to the external vibration intensity) competes against the configurational barriers created by the density fluctuations.Comment: 15 pages, 1 figure. Minor changes and update

Puromycin Sensitivity of Ribosomal Label after Incorporation of 14C-Labelled Amino Acids into Isolated Mitochondria from Neurospora crassa

Radioactive amino acids were incorporated into isolated mitochondria from Neurospora crassa. Then the mitochondrial ribosomes were isolated and submitted to density gradient centrifugation. A preferential labelling of polysomes was observed. However, when the mitochondrial suspension was treated with puromycin after amino acid incorporation, no radioactivity could be detected in either the monosomes or the polysomes. The conclusion is drawn that isolated mitochondria under these conditions do not incorporate significant amounts of amino acids into proteins of their ribosomes

Reddenings of FGK supergiants and classical Cepheids from spectroscopic data

Accurate and homogeneous atmospheric parameters (Teff, log (g), Vt, [Fe/H]) are derived for 74 FGK non-variable supergiants from high-resolution, high signal-to-noise ratio, echelle spectra. Extremely high precision for the inferred effective temperatures (10-40 K) is achieved by using the line-depth ratio method. The new data are combined with atmospheric values for 164 classical Cepheids, observed at 675 different pulsation phases, taken from our previously published studies. The derived values are correlated with unreddened B-V colours compiled from the literature for the investigated stars in order to obtain an empirical relationship of the form: (B-V)o = 57.984 - 10.3587(log Teff)^2 + 1.67572(log Teff)^3 - 3.356(log (g)) + 0.0321(Vt) + 0.2615[Fe/H] + 0.8833((log (g))(log Teff)). The expression is used to estimate colour excesses E(B-V) for individual supergiants and classical Cepheids, with a precision of +-0.05 mag. for supergiants and Cepheids with n=1-2 spectra, reaching +-0.025 mag. for Cepheids with n>2 spectra, matching uncertainties for the most sophisticated photometric techniques. The reddening scale is also a close match to the system of space reddenings for Cepheids. The application range is for spectral types F0--K0 and luminosity classes I and II.Comment: accepted for publication (MNRAS

Spectral properties of zero temperature dynamics in a model of a compacting granular column

The compacting of a column of grains has been studied using a one-dimensional Ising model with long range directed interactions in which down and up spins represent orientations of the grain having or not having an associated void. When the column is not shaken (zero 'temperature') the motion becomes highly constrained and under most circumstances we find that the generator of the stochastic dynamics assumes an unusual form: many eigenvalues become degenerate, but the associated multi-dimensional invariant spaces have but a single eigenvector. There is no spectral expansion and a Jordan form must be used. Many properties of the dynamics are established here analytically; some are not. General issues associated with the Jordan form are also taken up.Comment: 34 pages, 4 figures, 3 table

A record-driven growth process

We introduce a novel stochastic growth process, the record-driven growth process, which originates from the analysis of a class of growing networks in a universal limiting regime. Nodes are added one by one to a network, each node possessing a quality. The new incoming node connects to the preexisting node with best quality, that is, with record value for the quality. The emergent structure is that of a growing network, where groups are formed around record nodes (nodes endowed with the best intrinsic qualities). Special emphasis is put on the statistics of leaders (nodes whose degrees are the largest). The asymptotic probability for a node to be a leader is equal to the Golomb-Dickman constant omega=0.624329... which arises in problems of combinatorical nature. This outcome solves the problem of the determination of the record breaking rate for the sequence of correlated inter-record intervals. The process exhibits temporal self-similarity in the late-time regime. Connections with the statistics of the cycles of random permutations, the statistical properties of randomly broken intervals, and the Kesten variable are given.Comment: 30 pages,5 figures. Minor update

Competition and cooperation:aspects of dynamics in sandpiles

In this article, we review some of our approaches to granular dynamics, now well known to consist of both fast and slow relaxational processes. In the first case, grains typically compete with each other, while in the second, they cooperate. A typical result of {\it cooperation} is the formation of stable bridges, signatures of spatiotemporal inhomogeneities; we review their geometrical characteristics and compare theoretical results with those of independent simulations. {\it Cooperative} excitations due to local density fluctuations are also responsible for relaxation at the angle of repose; the {\it competition} between these fluctuations and external driving forces, can, on the other hand, result in a (rare) collapse of the sandpile to the horizontal. Both these features are present in a theory reviewed here. An arena where the effects of cooperation versus competition are felt most keenly is granular compaction; we review here a random graph model, where three-spin interactions are used to model compaction under tapping. The compaction curve shows distinct regions where 'fast' and 'slow' dynamics apply, separated by what we have called the {\it single-particle relaxation threshold}. In the final section of this paper, we explore the effect of shape -- jagged vs. regular -- on the compaction of packings near their jamming limit. One of our major results is an entropic landscape that, while microscopically rough, manifests {\it Edwards' flatness} at a macroscopic level. Another major result is that of surface intermittency under low-intensity shaking.Comment: 36 pages, 23 figures, minor correction

Theoretical Models for Classical Cepheids: IV. Mean Magnitudes and Colors and the Evaluation of Distance, Reddening and Metallicity

We discuss the metallicity effect on the theoretical visual and near-infrared PL and PLC relations of classical Cepheids, as based on nonlinear, nonlocal and time--dependent convective pulsating models at varying chemical composition. In view of the two usual methods of averaging (magnitude-weighted and intensity-weighted) observed magnitudes and colors over the full pulsation cycle, we briefly discuss the differences between static and mean quantities. We show that the behavior of the synthetic mean magnitudes and colors fully reproduces the observed trend of Galactic Cepheids, supporting the validity of the model predictions. In the second part of the paper we show how the estimate of the mean reddening and true distance modulus of a galaxy from Cepheid VK photometry depend on the adopted metal content, in the sense that larger metallicities drive the host galaxy to lower extinctions and distances. Conversely, self-consistent estimates of the Cepheid mean reddening, distance and metallicity may be derived if three-filter data are taken into account. By applying the theoretical PL and PLC relations to available BVK data of Cepheids in the Magellanic Clouds we eventually obtain Z \sim 0.008, E(B-V) \sim 0.02 mag, DM \sim 18.63 mag for LMC and Z \sim 0.004, E(B-V) \sim 0.01 mag., DM \sim 19.16 mag. for SMC. The discrepancy between such reddenings and the current values based on BVI data is briefly discussed.Comment: 16 pages, 11 postscript figures, accepted for publication on Ap