Relation entre les caractères morphologiques observés sur des plantes espacées et les indices de compétition intra et inter-spécifiques chez la luzerne

Relation entre les caractères morphologiques observés sur des plantes espacées et les indices de compétition intra et inter-spécifiques chez la luzerne. 2. Rencontres Francophones sur les Légumineuses (RFL2

An empirical model that uses light attenuation and plant nitrogen status to predict within-canopy N distribution and upscale photosynthesis from leaf to whole canopy

Modelling the spatial and temporal distribution of leaf nitrogen (N) is central to specify photosynthetic parameters and simulate canopy photosynthesis. Leaf photosynthetic parameters depend on both local light availability and whole-plant N status. The interaction between these two levels of integration has generally been modelled by assuming optimal canopy functioning, which is not supported by experiments. During this study, we examined how a set of empirical relationships with measurable parameters could be used instead to predict photosynthesis at the leaf and whole-canopy levels. The distribution of leaf N per unit area (Na) within the canopy was related to leaf light irradiance and to the nitrogen nutrition index (NNI), a whole-plant variable accounting for plant N status. Na was then used to determine the photosynthetic parameters of a leaf gas exchange model. The model was assessed on alfalfa canopies under contrasting N nutrition and with N2-fixing and non-fixing plants. Three experiments were carried out to parameterize the relationships between Na, leaf irradiance, NNI and photosynthetic parameters. An additional independent data set was used for model evaluation. The N distribution model showed that it was able to predict leaf N on the set of leaves tested. The Na at the top of the canopy appeared to be related linearly to the NNI, whereas the coef- ficient accounting for N allocation remained constant. Photosynthetic parameters were related linearly to Na irrespective of N nutrition and the N acquisition mode. Daily patterns of gas exchange were simulated accurately at the leaf scale. When integrated at the whole-canopy scale, the model predicted that raising N availability above an NNI of 1 did not result in increased net photosynthesis. Overall, the model proposed offered a solution for a dynamic coupling of leaf photosynthesis and canopy N distribution without requiring any optimal functioning hypothesis.Fil: Louarn, Gaëtan. Institut National de la Recherche Agronomique; FranciaFil: Frak, Ela. Institut National de la Recherche Agronomique; FranciaFil: Zaka, Serge. Institut National de la Recherche Agronomique; FranciaFil: Lebon, Eric. Institut National de la Recherche Agronomique. Unité Mixte de Recherche; FranciaFil: Prieto, Jorge Alejandro. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Mendoza; Argentin

A functional–structural plant model that simulates whole- canopy gas exchange of grapevine plants (Vitis vinifera L.) under different training systems

Background and Aims: Scaling from single-leaf to whole-canopy photosynthesis faces several complexities related to variations in light interception and leaf properties. To evaluate the impact of canopy strucuture on gas exchange, we developed a functional–structural plant model to upscale leaf processes to the whole canopy based on leaf N content. The model integrates different models that calculate intercepted radiation, leaf traits and gas exchange for each leaf in the canopy. Our main objectives were (1) to introduce the gas exchange model developed at the plant level by integrating the leaf-level responses related to canopy structure, (2) to test the model against an independent canopy gas exchange dataset recorded on different plant architectures, and (3) to quantify the impact of intra-canopy N distribution on crop photosynthesis. Methods: The model combined a 3D reconstruction of grapevine (Vitis vinifera) canopy architecture, a light interception model, and a coupled photosynthesis and stomatal conductance model that considers light-driven variations in N distribution. A portable chamber device was constructed to measure whole-plant gas exchange to validate the model outputs with data collected on different training systems. Finally, a sensitivity analysis was performed to evaluate the impact on C assimilation of different N content distributions within the canopy. Key Results: By considering a non-uniform leaf N distribution within the canopy, our model accurately reproduced the daily pattern of gas exchange of different canopy architectures. The gain in photosynthesis permitted by the non-uniform compared with a theoretical uniform N distribution was about 18 %, thereby contributing to the maximization of C assimilation. By contrast, considering a maximal N content for all leaves in the canopy overestimated net CO2 exchange by 28 % when compared with the non-uniform distribution. Conclusions: The model reproduced the gas exchange of plants under different training systems with a low error (10 %). It appears to be a reliable tool to evaluate the impact of a grapevine training system on water use efficiency at the plant level.EEA MendozaFil: Prieto, Jorge Alejandro. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Mendoza; Argentina.Fil: Louarn, Gaëtan. Institut National de la Recherche Agronomique; FranciaFil: Perez Peña, Jorge Esteban. Instituto Nacional de Tecnología Agropecuaria (INTA). Estación Experimental Agropecuaria Mendoza; ArgentinaFil: Ojeda, Hernan. Institut National de la Recherche Agronomique. Unité expérimentale de Pech Rouge; FranciaFil: Simonneau, Thierry. Institut National de la Recherche Agronomique. LEPSE Montpellier; FranciaFil: Lebon, Eric. Institut National de la Recherche Agronomique. Unité Mixte de Recherche; Franci

Building modular FSPM under OpenAlea: concepts and applications

International audienceThe OpenAlea platform (Pradal et al., 2008) was designed to facilitate the integration and inter-operability of heterogeneous models to get comprehensive FSPMs. It relies on Python gluing capabilities, that allow non intrusive integration of programs written in various languages (Fortran, C, C++, R, L-system); and on the dataflow computing paradigm, that promotes decomposition of applications into independent components that can be recombined dynamically into customized workflows. Still, a plugable collection of components is not by itself a solution to the modularity problem in FSPM modeling. First, heterogeneities between components inputs and outputs can lead to exponential needs for specific adaptors and converters to get functional assemblies. Second, several ways exist to decompose models into independent components. This can lead to incompatibilities or difficulties for re-assembly into comprehensive models. Last, users of the platform may find difficult to build applications, without some knowledge on how a simulation has to be reasoned within the data-flow computing paradigm. Here, we propose a modeling strategy to help for building coherent, yet modular FSPM under OpenAlea. We first define the key concepts of this strategy, illustrate how they can be used under Visualea and how it lead to a first set of reusable components resulting from various ecophysiological studies

La diversité variétale à l’échelle d’un territoire est-elle un levier pour améliorer les performances agronomiques de la luzerne ? Analyse d’une étude de simulation avec le modèle STICS

La diversité variétale à l’échelle d’un territoire est-elle un levier pour améliorer les performances agronomiques de la luzerne ? Analyse d’une étude de simulation avec le modèle STICS. 2. Rencontres Francophones sur les Légumineuses (RFL2

Incorporating Biodiversity into Biogeochemistry Models to Improve Prediction of Ecosystem Services in Temperate Grasslands: Review and Roadmap

Multi-species grasslands are reservoirs of biodiversity and provide multiple ecosystem services, including fodder production and carbon sequestration. The provision of these services depends on the control exerted on the biogeochemistry and plant diversity of the system by the interplay of biotic and abiotic factors, e.g., grazing or mowing intensity. Biogeochemical models incorporate a mechanistic view of the functioning of grasslands and provide a sound basis for studying the underlying processes. However, in these models, the simulation of biogeochemical cycles is generally not coupled to simulation of plant species dynamics, which leads to considerable uncertainty about the quality of predictions. Ecological models, on the other hand, do account for biodiversity with approaches adopted from plant demography, but without linking the dynamics of plant species to the biogeochemical processes occurring at the community level, and this hampers the models’ capacity to assess resilience against abiotic stresses such as drought and nutrient limitation. While setting out the state-of-the-art developments of biogeochemical and ecological modelling, we explore and highlight the role of plant diversity in the regulation of the ecosystem processes underlying the ecosystems services provided by multi-species grasslands. An extensive literature and model survey was carried out with an emphasis on technically advanced models reconciling biogeochemistry and biodiversity, which are readily applicable to managed grasslands in temperate latitudes. We propose a roadmap of promising developments in modelling

Sharing efforts for modelling plant systems: from publications to reusable software components

http://www-sop.inria.fr/virtualplants/Publications/2009/FPCBLRCCBMSVEAG09/[email protected] audiencePlant models become increasingly complex and their implementation often implies the use of advanced techniques in computer science. This evolution has been accompanied by the production of dedicated plant modelling tools, such as simulation platforms, that facilitate research in this field. However, much less sharing is observed for plant models themselves, that is for computer programs produced by scientists to address their specific questions. Yet, these programs could be highly valuable for other researchers, to avoid redundant development of similar code or to help non-specialists to simulate parts of a complex system. Model descriptions found in academic publications, even combined with code sources, are generally not sufficient for model reuse. Most difficulties come from the heterogeneity of language used, the structure of the programs, the download and installation procedures, the accessibility to the source code of the model, and the availability of documentation. The OpenAlea initiative (http://openalea.gforge.inria.fr) has been launched to address these problems by providing plant modellers with collaborative tools and guidelines to increase software quality, hence re-usability of their models. The Alinea pilot project further tested these concepts in a sample community of ecophysiologists and biophysicists. Based on this experience, we illustrate pros and cons of the approach and discuss future direction of progress. We foresee three steps towards a better re-usability of models: a better interoperability of existing tools and simulation platforms, the emergence of design patterns for plant modelling, and the definition of standardised data structures

A common shoot developmental framework for perennial legume species with contrasting morphogenesis

A wide range of legumes species is used for forage production in sown grasslands. Yet, despite their close phylogenetic relationship, they display a wide range of growth habit, morphologies and competitive abilities. Little is known about the elementary traits, which make temperate forage legumes differ so substantially in their growth habit. In the present study, we compared the patterns of shoot organogenesis and of organ growth of six contrasting forage species (namely alfalfa, birdsfoot trefoil, sainfoin, Kura clover, red clover and white clover) during their vegetative phase. An experiment was carried out over two years in a greenhouse under non-limiting water and soil nutrients.Phytomer initiation and shoot branching appeared driven by temperature and highly deterministic in all the species in the absence of competition for light. The temporal sequence of organ growth differed between species. However, organ growth was highly coordinated within a phytomer in all the species, and was independent of the position and axis order when expressed in phyllochronic time. By contrast, organ dimensions at maturity were dependent on phytomerposition, and followed a regular function of the rank for all the organs. Overall, a very similar developmental pattern was followed by all the species, but they differed greatly in the absolute values taken by their developmental traits

Analyse et modélisation de l'organogenèse et de l'architecture du rameau de vigne (Vitis vinifera L.)

MONTPELLIER-SupAgro La Gaillarde (341722306) / SudocSudocFranceF