Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression

Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expressionComment: 7 figures, 20 supplementary figures, 6 supplementary tables Paris M, Kaplan T, Li XY, Villalta JE, Lott SE, et al. (2013) Extensive Divergence of Transcription Factor Binding in Drosophila Embryos with Highly Conserved Gene Expression. PLoS Genet 9(9): e1003748. doi:10.1371/journal.pgen.100374

Mean curvature flow in a Ricci flow background

Following work of Ecker, we consider a weighted Gibbons-Hawking-York functional on a Riemannian manifold-with-boundary. We compute its variational properties and its time derivative under Perelman's modified Ricci flow. The answer has a boundary term which involves an extension of Hamilton's Harnack expression for the mean curvature flow in Euclidean space. We also derive the evolution equations for the second fundamental form and the mean curvature, under a mean curvature flow in a Ricci flow background. In the case of a gradient Ricci soliton background, we discuss mean curvature solitons and Huisken monotonicity.Comment: final versio

An Experiment in Visual Ethnography

This paper is an output from my attendance at an ESRC-funded ‘Live Sociology’ course at Goldsmiths College, London in 2006. The material here is based on a photography exercise and on discussions that took place during the workshop sessions.This paper discusses a one-day exercise in visual ethnography using a digital camera to take photographs of Deptford in South East London. For me, this represented an experiment in using photography in social research.ESR

A network-based ranking system for American college football

American college football faces a conflict created by the desire to stage national championship games between the best teams of a season when there is no conventional playoff system to decide which those teams are. Instead, ranking of teams is based on their record of wins and losses during the season, but each team plays only a small fraction of eligible opponents, making the system underdetermined or contradictory or both. It is an interesting challenge to create a ranking system that at once is mathematically well-founded, gives results in general accord with received wisdom concerning the relative strengths of the teams, and is based upon intuitive principles, allowing it to be accepted readily by fans and experts alike. Here we introduce a one-parameter ranking method that satisfies all of these requirements and is based on a network representation of college football schedules.Comment: 15 pages, 3 figure

UC-240 Gone Fishin\u27 VR

Gone Fishing is a VR game that allows the player to fish from the comfort of their own home. This take on a fishing simulator has creative and playful designs that are sure to surprise the players. With this game, we intend to invoke different comedic aspects found in other games such as designs, descriptions, and possible voiceovers in order to give the players a good time. This isn’t the average fishing simulator

Mean Curvature Flow on Ricci Solitons

We study monotonic quantities in the context of combined geometric flows. In particular, focusing on Ricci solitons as the ambient space, we consider solutions of the heat type equation integrated over embedded submanifolds evolving by mean curvature flow and we study their monotonicity properties. This is part of an ongoing project with Magni and Mantegazzawhich will treat the case of non-solitonic backgrounds \cite{a_14}.Comment: 19 page

The Sum over Topologies in Three-Dimensional Euclidean Quantum Gravity

In Hawking's Euclidean path integral approach to quantum gravity, the partition function is computed by summing contributions from all possible topologies. The behavior such a sum can be estimated in three spacetime dimensions in the limit of small cosmological constant. The sum over topologies diverges for either sign of $\Lambda$, but for dramatically different reasons: for $\Lambda>0$, the divergent behavior comes from the contributions of very low volume, topologically complex manifolds, while for $\Lambda<0$ it is a consequence of the existence of infinite sequences of relatively high volume manifolds with converging geometries. Possible implications for four-dimensional quantum gravity are discussed.Comment: 12 pages (LaTeX), UCD-92-1

Upper bounds on the first eigenvalue for a diffusion operator via Bakry-\'{E}mery Ricci curvature II

Let $L=\Delta-\nabla\varphi\cdot\nabla$ be a symmetric diffusion operator with an invariant measure $d\mu=e^{-\varphi}dx$ on a complete Riemannian manifold. In this paper we prove Li-Yau gradient estimates for weighted elliptic equations on the complete manifold with $|\nabla \varphi|\leq\theta$ and $\infty$-dimensional Bakry-\'{E}mery Ricci curvature bounded below by some negative constant. Based on this, we give an upper bound on the first eigenvalue of the diffusion operator $L$ on this kind manifold, and thereby generalize a Cheng's result on the Laplacian case (Math. Z., 143 (1975) 289-297).Comment: Final version. The original proof of Theorem 2.1 using Li-Yau gradient estimate method has been moved to the appendix. The new proof is simple and direc