Engage D2.6 Annual combined thematic workshops progress report (series 2)

The preparation, organisation and conclusions from the thematic challenge workshops, two ad hoc technical workshops, a technical session on data and a MET/ENV workshop held in 2019 and 2020 are described. Partly due to Covid-19, two of the 2020 thematic challenge workshops scheduled to take place at the end of 2020 were re-scheduled to January 2021. We also report on the preparation for these two workshops, while the conclusions will be included in the next corresponding deliverable

Engage D3.8 Mapping ATM research concepts, past and future - including the Engage wiki implementation

This report presents the wiki produced by Engage, SESAR’s Knowledge Transfer Network. It summarises the key development processes, status and planning for the wiki, which has been built over the past two years, with increased activity in 2020 to resolve underlying data provision issues. Inter alia, the wiki hosts the first interactive research map of European ATM, an ATM concepts roadmap, the first consolidated listing of European university programmes, and sets out progress towards a new, one-stop (data) repository for the research community

EURONU WP6 2009 yearly report: Update of the physics potential of Nufact, superbeams and betabeams

Many studies in the last ten years have shown that we can measure the unknown angle theta13, discover leptonic CP violation and determine the neutrino hierarchy in more precise neutrino oscillation experiments, searching for the subleading channel nue -> numu in the atmospheric range. In this first report of WP6 activities the following new results are reviewed: (1) Re-evaluation of the physics reach of the upcoming generation of experiments to measure theta13 and delta; (2) New tools to explore a larger parameter space as needed beyond the standard scenario; (3) Neutrino Factory: (a) evaluation of the physics reach of a Nufact regards sterile neutrinos; (b) evaluation of the physics reach of a Nufact as regards non-standard interactions; (c) evaluation of the physics reach of a Nufact as regards violation of unitarity; (d) critical assessment on long baseline tau-detection at Nufact; (e) new physics searches at a near detector in a Nufact; (4) Beta-beams: (a) choice of ions and location for a gamma = 100 CERN-based beta-beam; (b) re-evaluation of atmospheric neutrino background for the gamma = 100 beta-beam scenario; (c) study of a two baseline beta-beam; (d) measuring absolute neutrino mass with beta-beams; (e) progress on monochromatic beta-beams; (5) Update of the physics potential of the SPL super-beam. Eventually, we present an updated comparison of the sensitivity to theta13, delta and the neutrino mass hierarchy of several of the different proposed facilities.Comment: 2009 Yearly report of the Working Package 6 (Physics) of the EUROnu FP7 EU project. 55 pages, 21 figures

Study of CT Images Processing with the Implementation of MLEM Algorithm using CUDA on NVIDIA’S GPU Framework

In medicine, the acquisition process in Computed Tomography Images (CT) is obtained by a reconstruction algorithm. The classical method for image reconstruction is the Filtered Back Projection (FBP). This method is fast and simple but does not use any statistical information about the measurements. The appearance of artifacts and its low spatial resolution in reconstructed images must be considered. Furthermore, the FBP requires of optimal conditions of the projections and complete sets of data. In this paper a methodology to accelerate acquisition process for CT based on the Maximum Likelihood Estimation Method (MLEM) algorithm is presented. This statistical iterative reconstruction algorithm uses a GPU Programming Paradigms and was compared with sequential algorithms in which the reconstruction time was reduced by up to 3 orders of magnitude while preserving image quality. Furthermore, they showed a good performance when compared with reconstruction methods provided by commercial software. The system, which would consist exclusively of a commercial laptop and GPU could be used as a fast, portable, simple and cheap image reconstruction platform in the future

Chemical Abundances in the Secondary Star in the Black Hole Binary A0620-00

Using a high resolution spectrum of the secondary star in the black hole binary A0620-00, we have derived the stellar parameters and veiling caused by the accretion disk in a consistent way. We have used a chi^2 minimization procedure to explore a grid of 800 000 LTE synthetic spectra computed for a plausible range of both stellar and veiling parameters. Adopting the best model parameters found, we have determined atmospheric abundances of Fe, Ca, Ti, Ni and Al. The Fe abundance of the star is [Fe/H]=0.14 +- 0.20. Except for Ca, we found the other elements moderately over-abundant as compared with stars in the solar neighborhood of similar iron content. Taking into account the small orbital separation, the mass transfer rate and the mass of the convection zone of the secondary star, a comparison with element yields in supernova explosion models suggests a possible explosive event with a mass cut comparable to the current mass of the compact object. We have also analyzed the Li abundance, which is unusually high for a star of this spectral type and relatively low mass.Comment: 32 pages, 5 tables and 11 figures, uses rotate.st

Tangential-flow membrane clarification of Malvar (Vitis vinifera L.) wine: incidence on chemical composition and sensorial expression

Malvar white wine (Vilis vinifera L.) was cold settled (CSW) and clarified by tangential-flow membrane filtration (TFMF). A 500 kDa molecular mass cut-off membrane was used. Filtration flux of 49-48 L/hm(2) was achieved at transmembrane pressure of 0.7 bar. The treatment produced a completely clarified wine with turbidity of 0.11 NTU, but also a 10.3 % loss of proteins, which could be related to the decrease of some flavour compounds. The CSW and the membrane filtered wines (MFW) were assessed by means of their aroma and phenolic composition, as well as their sensory properties. The results showed that the general physicochemical parameters and most of the analysed phenolic compounds were not or slightly (up to 7.6 %) affected by the TFMF process. Nevertheless, the treatment produced an important loss of some key aroma compounds: up to 43 % of fatty acid and alcohol esters and up to 26 % of higher alcohols. Most affected were aroma species with higher molecular masses and lower polarities. Sensory analysis confirmed the global decrease in wine aroma. TFMF treatment produced also an increase of 52 % of the wine benzaldehyde content

The membrane depolarization and increase intracellular calcium level produced by silver nanoclusters are responsible for bacterial death

This work highlights how our silver ultra nanoclusters (ARGIRIUM-SUNc) hand-made synthesized, are very useful as a bactericide and anti-biofilm agent. The Argirium-SUNc effective antibacterial concentrations are very low (< 1 ppm) as compared to the corresponding values reported in the literature. Different bacterial defense mechanisms are observed dependent on ARGIRIUM-SUNc concentrations. Biochemical investigations (volatilome) have been performed to understand the pathways involved in cell death. By using fluorescence techniques and cell viability measurements we show, for the first time, that membrane depolarization and calcium intracellular level are both primary events in bacteria death. The ARGIRIUM-SUNc determined eradication of different biofilm at a concentration as low as 0.6 ppm. This suggests that the effect of the nanoparticles follows a common mechanism in different bacteria. It is highly probable that the chemical constitution of the crosslinks could be a key target in the disrupting mechanism of our nanoparticles. Since the biofilms and their constituents are essential for bacterial survival in contact with humans, the silver nanoparticles represent a logical target for new antibacterial treatments

The FunFOLD2 server for the prediction of protein-ligand interactions

The FunFOLD2 server is a new independent server that integrates our novel protein–ligand binding site and quality assessment protocols for the prediction of protein function (FN) from sequence via structure. Our guiding principles were, first, to provide a simple unified resource to make our function prediction software easily accessible to all via a simple web interface and, second, to produce integrated output for predictions that can be easily interpreted. The server provides a clean web interface so that results can be viewed on a single page and interpreted by non-experts at a glance. The output for the prediction is an image of the top predicted tertiary structure annotated to indicate putative ligand-binding site residues. The results page also includes a list of the most likely binding site residues and the types of predicted ligands and their frequencies in similar structures. The protein–ligand interactions can also be interactively visualized in 3D using the Jmol plug-in. The raw machine readable data are provided for developers, which comply with the Critical Assessment of Techniques for Protein Structure Prediction data standards for FN predictions. The FunFOLD2 webserver is freely available to all at the following web site: http://www.reading.ac.uk/bioinf/FunFOLD/FunFOLD_form_2_0.html