Patterns of distribution and current protection status of the Carnivora, Chiroptera and Insectivora in South Africa

Geographic patterns of species richness and endemism in three mammalian orders (Chiroptera, Insectivora and Carnivora) were studied in relation to the biomes and existing protected areas of greater South Africa (including Lesotho and Swaziland). Locality data for 21500 specimens representing 124 species were analysed with a geographical information system. Species richness of Chiroptera is high in the savanna biome, particularly in the north-east of the country, owing to the marginal intrusion of 14 tropical species. Endemism in Chiroptera is low, however, with only two endemic species in the fynbos and Karoo biomes. The Carnivora display less biome specificity and endemism than the Chiroptera. Whereas the north-eastern savannas have the highest species richness, the transition between the Nama-Karoo and grassland biomes is an important southern African centre of endemism for the Carnivora, particularly the smaller species. In addition to being an important centre for species richness in the Carnivora and Chiroptera, the Kruger National Park is also particularly important for Red Dala Book species in both orders. The Insectivora display both high species richness and endemism. Species richness of the Insectivora is greatest in the mesic south-east of the country, whereas endemism is most pronounced in the forest and grassland biomes. Differences in biome specificity and endemism between these orders reflect not only phylogenetic divergence, but also variation in body size, vagility and life-history strategies. Most of South Africa's endemics are small mammals and many of them are listed in the Red Data Book. Distributions, life-history strategies and trends in man-induced habitat degradation were used to re-evaluale the protection status of the 124 species. We conclude that at least 11 endemic species are not adequately protected by existing publicly owned protected areas and consequently identify several areas which need to be added to the existing protected area system

Distribution and protection of endemic or threatened rodents, lagomorphs and macrosceledids in South Africa

Distribution patterns and protection status of endemic or threatened Lagomorpha, Macroscelidea, and Rodentia were analysed using museum point locality data and a geographic information system (GIS). The study area comprised the greater South Africa (including Lesotho and Swaziland). Species richness of the target species is highest in the south-western parts of the country, and hotspots of endemism coincide with those of species richness. However, Red Data Book species hotspots are confined to the north-eastern parts of the country. One species richness hotspol in the Succulent Karoo contains no existing reserves, whereas all Red Data Book species hotspots are protected. In general, all target species are well protected within existing reserves, but those found in the Succulent and Nama-Karoo, especially the Namaqua dune molerat (Bathyergus janetta), the riverine rabbit (Bunolagus monticularis), Brants whistling rat (Parotomys brantsii), and the pygmy rock mouse (Petromyscus collinus), are threatened by a paucity of reserves in these biomes. A heuristic reserve selection algorithm was used to identify a more representative reserve system for the protection of all target species. Ten representative reserves were identified, six of which already contain existing reserves. An analysis of biome specificity of all species revealed that Myomyscus verreauxii is endemic to the fynbos, Bathyergus janetta to the Succulent Karoo, Zelotomys woosnami to the arid savanna, and Steatomys parvus to the savanna woodlands. No species are endemic to the Nama-Karoo or grasslands, although several species do show strong preferences for these habitats. It is recommended that hotspots, representative reserves, and species that are currently not protected, be awarded more protection, and that existing reserves which coincide with hotspots and representative reserves be managed for their mammal fauna. It is also recommended that the Red Data Book status of tour species, and six subspecies, should be changed

The expression of cytokines and chemokines in the blood of patients with severe weight loss from anorexia nervosa: An exploratory study

Anorexia nervosa (AN) is a serious, potentially life-threatening disorder characterized by severe weight loss, dysregulated eating, and often excessive exercise. While psychiatric illnesses such as depression are associated with increased levels of pro-inflammatory mediators, evidence for such disturbances in patients with AN has been less clear. To elucidate further immune responses in AN, we assayed a panel of cytokines and chemokines in the blood of patients undergoing inpatient treatment, testing the hypothesis that metabolic disturbances in this disease would lead to a pattern of immune disturbances distinct from that of other psychiatric diseases. For this purpose, we evaluated patients by the Beck Depression Inventory-II (BDI-II) and the Eating Disorders Examination-Questionnaire and assessed cytokines and chemokines by enzyme-linked immunosorbent assays. Patients reported a moderate level of depression (mean BDI-II = 22.6) but exhibited few immunologic abnormalities of the kind associated with major depressive disorder [e.g., increased interleukin (IL)-6]; RANTES showed the most frequent elevations and was increased in 4 of the patients studied. Together, these findings suggest that features of AN such as loss of adipose tissue and excessive exercise may attenuate cytokine production and thus modulate the experience of illness that impacts on core features of disease

Next-to-Leading Order QCD Analysis of Polarized Deep Inelastic Scattering Data

We present a Next-to-Leading order perturbative QCD analysis of world data on the spin dependent structure functions $g_1^p, g_1^n$, and $g_1^d$, including the new experimental information on the $Q^2$ dependence of $g_1^n$. Careful attention is paid to the experimental and theoretical uncertainties. The data constrain the first moments of the polarized valence quark distributions, but only qualitatively constrain the polarized sea quark and gluon distributions. The NLO results are used to determine the $Q^2$ dependence of the ratio $g_1/F_1$ and evolve the experimental data to a constant $Q^2 = 5 GeV^2$. We determine the first moments of the polarized structure functions of the proton and neutron and find agreement with the Bjorken sum rule.Comment: 21 pages, 4 figures; final version to be published in Phys. Lett. B. References updated. Uses elsart.cls version 1996/04/22, 2e-1.4

Fusarium: more than a node or a foot-shaped basal cell

Recent publications have argued that there are potentially serious consequences for researchers in recognising distinct genera in the terminal fusarioid clade of the family Nectriaceae. Thus, an alternate hypothesis, namely a very broad concept of the genus Fusarium was proposed. In doing so, however, a significant body of data that supports distinct genera in Nectriaceae based on morphology, biology, and phylogeny is disregarded. A DNA phylogeny based on 19 orthologous protein-coding genes was presented to support a very broad concept of Fusarium at the F1 node in Nectriaceae. Here, we demonstrate that re-analyses of this dataset show that all 19 genes support the F3 node that represents Fusarium sensu stricto as defined by F. sambucinum (sexual morph synonym Gibberella pulicaris). The backbone of the phylogeny is resolved by the concatenated alignment, but only six of the 19 genes fully support the F1 node, representing the broad circumscription of Fusarium. Furthermore, a re-analysis of the concatenated dataset revealed alternate topologies in different phylogenetic algorithms, highlighting the deep divergence and unresolved placement of various Nectriaceae lineages proposed as members of Fusarium. Species of Fusarium s. str. are characterised by Gibberella sexual morphs, asexual morphs with thin- or thick-walled macroconidia that have variously shaped apical and basal cells, and trichothecene mycotoxin production, which separates them from other fusarioid genera. Here we show that the Wollenweber concept of Fusarium presently accounts for 20 segregate genera with clear-cut synapomorphic traits, and that fusarioid macroconidia represent a character that has been gained or lost multiple times throughout Nectriaceae. Thus, the very broad circumscription of Fusarium is blurry and without apparent synapomorphies, and does not include all genera with fusarium-like macroconidia, which are spread throughout Nectriaceae (e.g., Cosmosporella, Macroconia, Microcera). In this study four new genera are introduced, along with 18 new species and 16 new combinations. These names convey information about relationships, morphology, and ecological preference that would otherwise be lost in a broader definition of Fusarium. To assist users to correctly identify fusarioid genera and species, we introduce a new online identification database, Fusarioid-ID, accessible at www.fusarium.org. The database comprises partial sequences from multiple genes commonly used to identify fusarioid taxa (act1, CaM, his3, rpb1, rpb2, tef1, tub2, ITS, and LSU). In this paper, we also present a nomenclator of names that have been introduced in Fusarium up to January 2021 as well as their current status, types, and diagnostic DNA barcode data. In this study, researchers from 46 countries, representing taxonomists, plant pathologists, medical mycologists, quarantine officials, regulatory agencies, and students, strongly support the application and use of a more precisely delimited Fusarium (= Gibberella) concept to accommodate taxa from the robust monophyletic node F3 on the basis of a well-defined and unique combination of morphological and biochemical features. This F3 node includes, among others, species of the F. fujikuroi, F. incarnatum-equiseti, F. oxysporum, and F. sambucinum species complexes, but not species of Bisifusarium [F. dimerum species complex (SC)], Cyanonectria (F. buxicola SC), Geejayessia (F. staphyleae SC), Neocosmospora (F. solani SC) or Rectifusarium (F. ventricosum SC). The present study represents the first step to generating a new online monograph of Fusarium and allied fusarioid genera (www.fusarium.org)

Ilyonectria black foot rot associated with Proteaceae

Proteaceae is an important component of the South African cut flower industry. Propagation of these woody plants using vegetative cuttings is, however, hampered by fungal infections initiated in the nursery. Recently black foot rot disease symptoms were observed on vegetative cuttings of Protea and Leucospermum in a fynbos nursery near Stanford, Western Cape Province, South Africa. Isolations from symptomatic plant material revealed several isolates of Ilyonectria, which were identified as I. macrodidyma, I. torresensis and four novel taxa described here as I. capensis, I. leucospermi, I. protearum and I. vredehoekensis. Species were characterised based on DNA phylogenetic inference and morphological comparisons. Furthermore, pathogenicity tests were conducted, which confirmed all six Ilyonectria species capable of causing black foot rot of Proteaceae. Other than the novel plant pathogenic species described here, this study also represents the first report of black foot rot disease associated with the cultivation of Proteaceae cut flowers

Redefining species limits in the Fusarium fujikuroi species complex

The Fusarium fujikuroi species complex (FFSC) includes more than 60 phylogenetic species (phylospecies) with both phytopathological and clinical importance. Because of their economical relevance, a stable taxonomy and nomenclature is crucial for species in the FFSC. To attain this goal, we examined type specimens and representative cultures of several species by employing morphology and phylogenetic analyses based on partial gene fragments of the translation elongation factor 1-alpha (tef1), beta-tubulin (tub2), calmodulin (cmdA), RNA polymerase largest subunit (rpb1) and RNA polymerase II second largest subunit (rpb2). Based on these results three new species were delimited in the FFSC. Two of these phylospecies clustered within the African clade, and one in the American clade. Epitypes were also designated for six previously described FFSC species including F. proliferatum and F. verticillioides, and a neotype designated for F. subglutinans. Furthermore, both F. acutatum and F. ophioides, which were previously invalidly published, are validated