Analysis of B-genome derived simple sequence repeat (SSR) markers in Musa spp.

A study was conducted to investigate the genetic variability between 40 Musa genotypes maintained at the Musa germplasm collection of the International Institute for Tropical Agriculture, Ibadan using nine B-genome derived simple sequence repeat (SSR) markers. The nine primers produced reproducible and discrete fragments and generated a total of 23 alleles with an average of 2.1. The hierarchical cluster analysis showed clusters of diploid cultivars separate from triploid ones (with the exception of TMB149 (BB) and TMB131 (AB)). Average gene diversity was He = 0.412, and differentiation, given by the fixation index (FST) was low at 0.13

Analysis of B-genome derived simple sequence repeat (SSR) markers in Musa spp.

A study was conducted to investigate the genetic variability between 40 Musa genotypes maintained at the Musa germplasm collection of the International Institute for Tropical Agriculture, Ibadan using nine B-genome derived simple sequence repeat (SSR) markers. The nine primers produced reproducible and discrete fragments and generated a total of 23 alleles with an average of 2.1. The hierarchical cluster analysis showed clusters of diploid cultivars separate from triploid ones (with the exception of TMB149 (BB) and TMB131 (AB)). Average gene diversity was He = 0.412, and differentiation, given by the fixation index (FST) was low at 0.131.Keywords: Banana, genetic diversity, gene differentiation, plantai

Molecular markers associated with a new source of resistance to the cassava mosaic disease

The predominant source of resistance to the cassava mosaic disease (CMD) is known to be polygenic requiring evaluation in multiple environments to characterise resistant genotypes, which makes the detection of genes for resistance using segregation analysis inefficient. Recently, some landraces have been identified which exhibit high levels of resistance to CMD. In this study, molecular markers associated with resistance to CMD in a resistant landrace were identified, using F1 progenies derived from a cross between the CMD resistant landrace TME7 and the susceptible line TMS30555, as a first step in marker assisted breeding for CMD resistance. Bulk segregant analysis (BSA) on the parents, resistant and susceptible DNA pools, using simple sequence repeat (SSR) and amplified fragment length polymorphism (AFLP) markers revealed that an SSR marker, SSRY28-180, donated by the resistant parent was linked with resistance to CMD. Marker-trait association detected by regression analysis showed that the marker, accounted for 57.41% of total phenotypic variation for resistance. The analysis furthershowed that another SSR marker, SSRY106-207 and an AFLP marker, E-ACC/M-CTC-225, accounted for 35.59% and 22.5% of the total phenotypic variation for resistance, respectively. The implication of the results in breeding for resistance to CMD is discussed

Genetic divergence of rubber tree estimated by multivariate techniques and microsatellite markers

Genetic diversity of 60 Hevea genotypes, consisting of Asiatic, Amazonian, African and IAC clones, and pertaining to the genetic breeding program of the Agronomic Institute (IAC), Brazil, was estimated. Analyses were based on phenotypic multivariate parameters and microsatellites. Five agronomic descriptors were employed in multivariate procedures, such as Standard Euclidian Distance, Tocher clustering and principal component analysis. Genetic variability among the genotypes was estimated with 68 selected polymorphic SSRs, by way of Modified Rogers Genetic Distance and UPGMA clustering. Structure software in a Bayesian approach was used in discriminating among groups. Genetic diversity was estimated through Nei's statistics. The genotypes were clustered into 12 groups according to the Tocher method, while the molecular analysis identified six groups. In the phenotypic and microsatellite analyses, the Amazonian and IAC genotypes were distributed in several groups, whereas the Asiatic were in only a few. Observed heterozygosity ranged from 0.05 to 0.96. Both high total diversity (HT' = 0.58) and high gene differentiation (G st' = 0.61) were observed, and indicated high genetic variation among the 60 genotypes, which may be useful for breeding programs. The analyzed agronomic parameters and SSRs markers were effective in assessing genetic diversity among Hevea genotypes, besides proving to be useful for characterizing genetic variability

Genetic characterization of cassava (Manihot esculenta) landraces in Brazil assessed with simple sequence repeats

Based on nine microsatellite loci, the aim of this study was to appraise the genetic diversity of 42 cassava (Manihot esculenta) landraces from selected regions in Brazil, and examine how this variety is distributed according to origin in several municipalities in the states of Minas Gerais, São Paulo, Mato Grosso do Sul, Amazonas and Mato Grosso. High diversity values were found among the five above-mentioned regions, with 3.3 alleles per locus on an average, a high percentage of polymorphic loci varying from 88.8% to 100%, an average of 0.265 for observed heterozygosity and 0.570 for gene diversity. Most genetic diversity was concentrated within the regions themselves (HS = 0.52). Cluster analysis and principal component based scatter plotting showed greater similarity among landraces from São Paulo, Mato Grosso do Sul and Amazonas, whereas those from Minas Gerais were clustered into a sub-group within this group. The plants from Mato Grosso, mostly collected in the municipality of General Carneiro, provided the highest differentiation. The migration of human populations is one among the possible reasons for this closer resemblance or greater disparity among plants from the various regions

QTLs associated with resistance to the cassava mosaic disease: new directions for a diverse planet

The cassava mosaic disease (CMD) is an economically important disease of the food crop cassava (Manihot esculenta Crantz) in Africa. Quantitative trait loci (QTLs) associated with resistance to CMD were identified using 132 F1 progeny derived from a cross between the CMD resistant accession TMSI30572 and the susceptible landrace TME117. The population was evaluated in the field for two growing seasons in Nigeria. Mean disease severity scores (MDSS) were used for QTL analysis. Five highly significant (p<0.001) marker-associated QTL effects, explaining between 10.47 and 12.15% of the total phenotypic variation, were detected by regression in the old source of resistance. The Kruskal Wallis analysis further detected four highly significant marker-associated QTL effects. Significant marker trait associations were due to markers donated by both parents, which confirms the polygenic and recessive nature of this source of resistance