How genomics can help biodiversity conservation

The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prerequisite skills, and current shortcomings of applications. Most approaches perform best in combination with reference genomes from the target species or closely related species. We review case studies to illustrate how reference genomes can facilitate biodiversity research and conservation across the tree of life. We conclude that the time is ripe to view reference genomes as fundamental resources and to integrate their use as a best practice in conservation genomics.info:eu-repo/semantics/publishedVersio

The era of reference genomes in conservation genomics

Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics

The era of reference genomes in conservation genomics

info:eu-repo/semantics/publishedVersio

The era of reference genomes in conservation genomics

Progress in genome sequencing now enables the large-scale generation of reference genomes. Various international initiatives aim to generate reference genomes representing global biodiversity. These genomes provide unique insights into genomic diversity and architecture, thereby enabling comprehensive analyses of population and functional genomics, and are expected to revolutionize conservation genomics

How genomics can help biodiversity conservation

The availability of public genomic resources can greatly assist biodiversity assessment, conservation, and restoration efforts by providing evidence for scientifically informed management decisions. Here we survey the main approaches and applications in biodiversity and conservation genomics, considering practical factors, such as cost, time, prerequisite skills, and current shortcomings of applications. Most approaches perform best in combination with reference genomes from the target species or closely related species. We review case studies to illustrate how reference genomes can facilitate biodiversity research and conservation across the tree of life. We conclude that the time is ripe to view reference genomes as fundamental resources and to integrate their use as a best practice in conservation genomics

Guess again (and again and again): Measuring password strength by simulating password-cracking algorithms (CMU-CyLab-11-008)

Text-based passwords remain the dominant authentication method in computer systems, despite significant advancement in attackers’ capabilities to perform password cracking. In response to this threat, password composition policies have grown increasingly complex. However, there is insufficient research defining metrics to characterize password strength and evaluating password-composition policies using these metrics. In this paper, we describe an analysis of 12,000 passwords collected under seven composition policies via an online study. We develop an efficient distributed method for calculating how effectively several heuristic password-guessing algorithms guess passwords. Leveraging this method, we investigate (a) the resistance of passwords created under different conditions to password guessing; (b) the performance of guessing algorithms under different training sets; (c) the relationship between passwords explicitly created under a given composition policy and other passwords that happen to meet the same requirements; and (d) the relationship between guessability, as measured with password-cracking algorithms, and entropy estimates. We believe our findings advance understanding of both password-composition policies and metrics for quantifying password security.</p

Measuring Password Guessability for an Entire University (CMU-CyLab-13-013)

<p>Despite considerable research on passwords, empirical studies of password strength have been limited by lack of access to plaintext passwords, small data sets, and password sets specifically collected for a research study or from low-value accounts. Properties of passwords used for high-value accounts thus remain poorly understood. We fill this gap by studying the single-sign-on passwords used by over 25,000 faculty, staff, and students at a research university with a complex password policy. Key aspects of our contributions rest on our (indirect) access to plaintext passwords. We describe our data collection methodology, particularly the many precautions we took to minimize risks to users. We then analyze how guessable the collected passwords would be during an offline attack by subjecting them to a state-of-the-art password cracking algorithm. We discover significant correlations between a number of demographic and behavioral factors and password strength. For example, we find that users associated with the computer science school make passwords more than 1.8 times as strong as those of users associated with the business school. In addition, we find that stronger passwords are correlated with a higher rate of errors entering them. We also compare the guessability and other characteristics of the passwords we analyzed to sets previously collected in controlled experiments or leaked from low-value accounts. We find more consistent similarities between the university passwords and passwords collected for research studies under similar composition policies than we do between the university passwords and subsets of passwords leaked from low-value accounts that happen to comply with the same policies.</p

Access Control for Home Data Sharing: Attitudes, Needs and Practices (CMU-CyLab-09-013, CMU-PDL-09-110)

As digital content becomes more prevalent in the home, nontechnical users are increasingly interested in sharing that content with others and accessing it from multiple devices. Not much is known about how these users think about controlling access to this data. To better understand this, we conducted semi-structured, in-situ interviews with 33 users in 15 households. We found that users create ad-hoc access-control mechanisms that do not always work; that their ideal polices are complex and multi-dimensional; that a priori policy specification is often insufficient; and that people’s mental models of access control and security are often misaligned with current systems. We detail these findings and present a set of associated guidelines for designing usable access-control systems for the home environment