Methylmercury risk assessment issues

This paper reviews the general background of health risks associated with mercury (Hg), primarily methylmercury (MeHg), with a view towards application to advanced technologies that could reduce any contributions from coal combustion. The need for accurate assessment of such risks is discussed, since Hg is now widely dispersed in the environment and cannot easily be eliminated. The primary pathway of MeHg intake is through eating contaminated fish. The issues of concern include identification of critical health outcomes (various neurological indices) and their confounding factors, accurate assessment of MeHg intake rates, and appropriate use of dose-response functions. Ultimately, such information will be used to evaluate alternative coal combustion systems

ModE-Sim – a medium-sized atmospheric general circulation model (AGCM) ensemble to study climate variability during the modern era (1420 to 2009)

We introduce ModE-Sim (Modern Era SIMulations), a medium-sized ensemble of simulations with the atmospheric general circulation model ECHAM6 in its LR (low-resolution) version (T63; approx. 1.8∘ horizontal grid width with 47 vertical levels). At the lower boundary we use prescribed sea surface temperatures and sea ice that reflect observed values while accounting for uncertainties in these. Furthermore we use radiative forcings that also reflect observed values while accounting for uncertainties in the timing and strength of volcanic eruptions. The simulations cover the period from 1420 to 2009. With 60 ensemble members between 1420 and 1850 and 36 ensemble members from 1850 to 2009, ModE-Sim consists of 31 620 simulated years in total. ModE-Sim is suitable for many applications as its various subsets can be used as initial-condition and boundary-condition ensembles to study climate variability. The main intention of this paper is to give a comprehensive description of the experimental setup of ModE-Sim and to provide an evaluation, mainly focusing on the two key variables, 2 m temperature and precipitation. We demonstrate ModE-Sim's ability to represent their mean state, to produce a reasonable response to external forcings, and to sample internal variability. Through the example of heat waves, we show that the ensemble is even capable of capturing certain types of extreme events.</p

Mercury-selenium interactions in the environment

The Clean Air Act Amendments of 1990 require the U.S. Environmental Protection Agency (EPA) to consider the need to control emissions of trace elements and compounds emitted from coal combustion, including coal-fired power plants. Concern has been expressed about emissions of mercury and arsenic, for example, since health effects may be associated with exposure to some of these compounds. By and large, effects of trace element emissions have been considered individually, without regard for possible interactions. To the extent that the relevant environmental pathways and health endpoints differ, this mode of analysis is appropriate. For example, arsenic is considered a carcinogen and mercury affects the brain. However, there may be compelling reasons to consider emissions of mercury (Hg) and selenium (Se) together: (1) Both Se and Hg are emitted from power plants primarily as vapors. (2) Hg and Se are both found in fish, which is the primary pathway for Hg health effects. (3) Se has been shown to suppress Hg methylation in aqueous systems, which is a necessary step for Hg health effects at current environmental concentrations. (4) Se is a trace element that is essential for health but that can also be toxic at high concentrations; it can thus have both beneficial and adverse health effects, depending on the dosage. This paper reviews some of the salient characteristics and interactions of the Hg-Se system, to consider the hypothesis that the effects of emissions of these compounds should be considered jointly

Using Situs for the integration of multi-resolution structures

Situs is a modular and widely used software package for the integration of biophysical data across the spatial resolution scales. It has been developed over the last decade with a focus on bridging the resolution gap between atomic structures, coarse-grained models, and volumetric data from low-resolution biophysical origins, such as electron microscopy, tomography, or small-angle scattering. Structural models can be created and refined with various flexible and rigid body docking strategies. The software consists of multiple, stand-alone programs for the format conversion, analysis, visualization, manipulation, and assembly of 3D data sets. The programs have been ported to numerous platforms in both serial and shared memory parallel architectures and can be combined in various ways for specific modeling applications. The modular design facilitates the updating of individual programs and the development of novel application workflows. This review provides an overview of the Situs package as it exists today with an emphasis on functionality and workflows supported by version 2.5

Metropolitan New York in the Greenhouse: Air Quality and Health Effects

A variety of potential effects on human health resulting from climate change have been identified in several assessments. According to an international panel{sup 1} they include direct effects of extreme temperatures on cardiovascular deaths, secondary effects due to vector-borne diseases or crop yields, and tertiary effects such as those that might arise from conflicts over freshwater supplies. To this fist we add the secondary effects of increased air pollution, which may result either directly from climate change or indirectly from increased air conditioning loads and the corresponding pollutant emissions from electric utilities. Higher ozone concentrations have been linked to increased ambient temperatures by both theory and observations of monitoring data. A similar association with particulate matter has been limited to observations, thus far. The pollution-heat linkage has been recognized before` but health effects have not been evaluated in terms of predictions of the joint effects of both agents. This paper has been prepared in two sections. First, we discuss the ozone situation with special reference to the Northeast Corridor and New York. In the second section, we present estimates of the health effects of climate change on New York and discuss some mitigation options

Predicting coaxial helical stacking in RNA junctions

RNA junctions are important structural elements that form when three or more helices come together in space in the tertiary structures of RNA molecules. Determining their structural configuration is important for predicting RNA 3D structure. We introduce a computational method to predict, at the secondary structure level, the coaxial helical stacking arrangement in junctions, as well as classify the junction topology. Our approach uses a data mining approach known as random forests, which relies on a set of decision trees trained using length, sequence and other variables specified for any given junction. The resulting protocol predicts coaxial stacking within three- and four-way junctions with an accuracy of 81% and 77%, respectively; the accuracy increases to 83% and 87%, respectively, when knowledge from the junction family type is included. Coaxial stacking predictions for the five to ten-way junctions are less accurate (60%) due to sparse data available for training. Additionally, our application predicts the junction family with an accuracy of 85% for three-way junctions and 74% for four-way junctions. Comparisons with other methods, as well applications to unsolved RNAs, are also presented. The web server Junction-Explorer to predict junction topologies is freely available at: http://bioinformatics.njit.edu/junction

Direct evidence for sequence-dependent attraction between double-stranded DNA controlled by methylation

Although proteins mediate highly ordered DNA organization in vivo, theoretical studies suggest that homologous DNA duplexes can preferentially associate with one another even in the absence of proteins. Here we combine molecular dynamics simulations with single-molecule fluorescence resonance energy transfer experiments to examine the interactions between duplex DNA in the presence of spermine, a biological polycation. We find that AT-rich DNA duplexes associate more strongly than GC-rich duplexes, regardless of the sequence homology. Methyl groups of thymine acts as a steric block, relocating spermine from major grooves to interhelical regions, thereby increasing DNA-DNA attraction. Indeed, methylation of cytosines makes attraction between GC-rich DNA as strong as that between AT-rich DNA. Recent genome-wide chromosome organization studies showed that remote contact frequencies are higher for AT-rich and methylated DNA, suggesting that direct DNA-DNA interactions that we report here may play a role in the chromosome organization and gene regulationopen

Bladder and upper urinary tract cancers as first and second primary cancers

Background Previous population-based studies on second primary cancers (SPCs) in urothelial cancers have focused on known risk factors in bladder cancer patients without data on other urothelial sites of the renal pelvis or ureter. Aims To estimate sex-specific risks for any SPCs after urothelial cancers, and in reverse order, for urothelial cancers as SPCs after any cancer. Such two-way analysis may help interpret the results. Methods We employed standardized incidence ratios (SIRs) to estimate bidirectional relative risks of subsequent cancer associated with urothelial cancers. Patient data were obtained from the Swedish Cancer Registry from years 1990 through 2015. Results We identified 46 234 urinary bladder cancers (75% male), 940 ureteral cancers (60% male), and 2410 renal pelvic cancers (57% male). After male bladder cancer, SIRs significantly increased for 9 SPCs, most for ureteral (SIR 41.9) and renal pelvic (17.2) cancers. In the reversed order (bladder cancer as SPC), 10 individual FPCs were associated with an increased risk; highest associations were noted after renal pelvic (21.0) and ureteral (20.9) cancers. After female bladder cancer, SIRs of four SPCs were significantly increased, most for ureteral (87.8) and pelvic (35.7) cancers. Female bladder, ureteral, and pelvic cancers associated are with endometrial cancer. Conclusions The risks of recurrent urothelial cancers were very high, and, at most sites, female risks were twice over the male risks. Risks persisted often to follow-up periods of >5 years, motivating an extended patient follow-up. Lynch syndrome-related cancers were associated with particularly female urothelial cancers, calling for clinical vigilance.Peer reviewe